Estimating a population cumulative incidence under calendar time trends
Open accessAbstract
BACKGROUND: The risk of a disease or psychiatric disorder is frequently measured by the age-specific cumulative incidence. Cumulative incidence estimates are often derived in cohort studies with individuals recruited over calendar time and with the end of follow-up governed by a specific date. It is common practice to apply the Kaplan-Meier or Aalen-Johansen estimator to the total sample and report either the estimated cumulative incidence curve or just a single point on the curve as a description of the disease risk. METHODS: We argue that, whenever the disease or disorder of interest is influenced by calendar time trends, the total sample Kaplan-Meier and Aalen-Johansen estimators do not provide useful estimates of the general risk in the target population. We present some alternatives to this type of analysis. RESULTS: We show how a proportional hazards model may be used to extrapolate disease risk estimates if proportionality is a reasonable assumption. If not reasonable, we instead advocate that a more useful description of the disease risk lies in the age-specific cumulative incidence curves across strata given by time of entry or perhaps just the end of follow-up estimates across all strata. Finally, we argue that a weighted average of these end of follow-up estimates may be a useful summary measure of the disease risk within the study period. CONCLUSIONS: Time trends in a disease risk will render total sample estimators less useful in observational studies with staggered entry and administrative censoring. An analysis based on proportional hazards or a stratified analysis may be better alternatives.
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The SNP heritability of ASD was estimated to be 0.118 (SE=0.010, for a population prevalence of 0.012).
“The SNP heritability ( ℎ𝐺 2 ) was estimated to be 0.118 (SE = 0.010, for a population prevalence of 0.012 18 .”
From Identification of common genetic risk variants for autism spectrum disorder (2019) · cites this paper as [18]
The Results sections discuss ASD cumulative incidence and comparisons between countries, not SNP heritability. Searches for SNP heritability, 0.118, SE 0.010, and population prevalence 0.012 found no passage reporting the claimed estimate. (LLM, conf=0.76)
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Identification of common genetic risk variants for autism spectrum disorder
Autism Spectrum Disorder Working Group of the Psychiatric Genomics Consortium, Grove, J., BUPGEN, Major Depressive Disorder Working Group of the Psychiatric Genomics Consortium, 23andMe Research Team, Ripke, S., Als, T. D., Mattheisen, M., Walters, R. K., Won, H., et al. (2019) · Nature Genetics · doi:10.1038/s41588-019-0344-8 · Cited by 2,421 · see citing works
Dalsgaard, S., Thorsteinsson, E., Trabjerg, B. B., Schullehner, J., Plana-Ripoll, O., Brikell, I., Wimberley, T., Thygesen, M., Madsen, K. B., Timmerman, A., et al. (2020) · JAMA Psychiatry · doi:10.1001/jamapsychiatry.2019.3523 · Cited by 510 · see citing works
- Authors
- Hansen, S. N., Overgaard, M., Andersen, P. K., & Parner, E. T.
- Affiliations
- Aarhus University (DK)
- University of Copenhagen (DK)
- Corresponding author
- Hansen, Stefan N.
- Venue
- BMC Medical Research Methodology
- Published
- 2017-01-11
- Volume
- 17
- Issue
- 1
- Pages
- 7-7
- ISSN
- 1471-2288 (ISSN-L)
- PMC
- PMC5225659
- OpenAlex
- W2575064036
- Cited by
- 24
- References
- 1
- Citations by year
- 2026: 1 · 2025: 4 · 2024: 4 · 2023: 2 · 2022: 4 · 2021: 2 · 2020: 2 · 2019: 3 · 2018: 1 · 2017: 1
- FWCI
- 1.33
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Licence
- cc-by
- Locations
- BMC Medical Research Methodology (publishedVersion, cc-by)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- Research at the University of Copenhagen (University of Copenhagen) (publishedVersion, cc-by)
- DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
- Scopus (Elsevier) (submittedVersion, other-oa)
- Topics
- Physical Sciences › Mathematics › Statistics and Probability › Statistical Methods in Epidemiology
- Physical Sciences › Mathematics › Statistics and Probability › Statistical Methods and Inference
- Physical Sciences › Mathematics › Statistics and Probability › Advanced Causal Inference Techniques
- Keywords
- cumulative incidence, Kaplan-Meier estimator, Aalen-Johansen estimator, proportional hazards model, staggered entry, stratified analysis, disease risk assessment
- MeSH terms
- Autism Spectrum Disorder, Adolescent, Adult, Algorithms, Attention Deficit Disorder with Hyperactivity, Mental Disorders, Child, Computer Simulation, Denmark, Female, Finland, Tourette Syndrome, Humans, Male, Middle Aged, Models, Theoretical, Obsessive-Compulsive Disorder, Risk Factors, Time Factors, Incidence, Prevalence, Proportional Hazards Models, Risk Assessment, Kaplan-Meier Estimate, Young Adult
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