Cited by 24Statistical Methods in EpidemiologyStatistical Methods and InferenceAdvanced Causal Inference Techniques

Estimating a population cumulative incidence under calendar time trends

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Hansen, Stefan N., Overgaard, Morten, Andersen, Per K., Parner, Erik T.·2017·BMC Medical Research Methodology

Abstract

BACKGROUND: The risk of a disease or psychiatric disorder is frequently measured by the age-specific cumulative incidence. Cumulative incidence estimates are often derived in cohort studies with individuals recruited over calendar time and with the end of follow-up governed by a specific date. It is common practice to apply the Kaplan-Meier or Aalen-Johansen estimator to the total sample and report either the estimated cumulative incidence curve or just a single point on the curve as a description of the disease risk. METHODS: We argue that, whenever the disease or disorder of interest is influenced by calendar time trends, the total sample Kaplan-Meier and Aalen-Johansen estimators do not provide useful estimates of the general risk in the target population. We present some alternatives to this type of analysis. RESULTS: We show how a proportional hazards model may be used to extrapolate disease risk estimates if proportionality is a reasonable assumption. If not reasonable, we instead advocate that a more useful description of the disease risk lies in the age-specific cumulative incidence curves across strata given by time of entry or perhaps just the end of follow-up estimates across all strata. Finally, we argue that a weighted average of these end of follow-up estimates may be a useful summary measure of the disease risk within the study period. CONCLUSIONS: Time trends in a disease risk will render total sample estimators less useful in observational studies with staggered entry and administrative censoring. An analysis based on proportional hazards or a stratified analysis may be better alternatives.

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  • The SNP heritability of ASD was estimated to be 0.118 (SE=0.010, for a population prevalence of 0.012).

    “The SNP heritability ( ℎ𝐺 2 ) was estimated to be 0.118 (SE = 0.010, for a population prevalence of 0.012 18 .”

    From Identification of common genetic risk variants for autism spectrum disorder (2019) · cites this paper as [18]

    The Results sections discuss ASD cumulative incidence and comparisons between countries, not SNP heritability. Searches for SNP heritability, 0.118, SE 0.010, and population prevalence 0.012 found no passage reporting the claimed estimate. (LLM, conf=0.76)

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  1. [2]Amato DA A generalized Kaplan–Meier estimator for heterogeneous populations Commun Stat Theory Methods 1988 17 1 263 86 10.1080/03610928808829621 · DOI
  2. [3]Andersen PK Borgan Ø Gill RD Keiding N Statistical Models Based on Counting Processes 1993 New York Springer-Verlag
  3. [4]Atladottir HO Parner ET Schendel D Dalsgaard S Thomsen PH Thorsen P Time trends in reported diagnoses of childhood neuropsychiatric disorders: a danish cohort study Arch Pediatr Adolesc Med 2007 161 2 193 8 10.1001/archpedi.161.2.193 17283306 · DOI
  4. [5]Atladottir HO Gyllenberg D Langridge A Sandin S Hansen SN Leonard H Gissler M Reichenberg A Schendel DE Bourke J Hultman CM Grice DE Buxbaum JD Parner ET The increasing prevalence of reported diagnoses of childhood psychiatric disorders: a descriptive multinational comparison Eur Child Adolesc Psychiatry 2014 24 2 173 83 10.1007/s00787-014-0553-8 24796725 · DOI
  5. [6]Bongaarts J Feeney G Estimating mean lifetime PNAS 2003 100 23 13,127 33 10.1073/pnas.2035060100 PMC263728 14506294 · DOI
  6. [7]Cetin K Christiansen CF Sværke C Jacobsen JB Sørensen HT Survival in patients with breast cancer with bone metastasis: a danish population-based cohort study on the prognostic impact of initial stage of disease at breast cancer diagnosis and length of the bone metastasis-free interval BMJ Open 2015 5 4 e007,702 10.1136/bmjopen-2015-007702 PMC4420974 25926150 · DOI
  7. [8]Christensen J Pedersen CB Sidenius P Olsen J Vestergaard M Long-term mortality in children and young adults with epilepsy - a population-based cohort study Epilepsy Res 2015 114 81 88 10.1016/j.eplepsyres.2015.05.001 26088890 · DOI
  8. [9]Claessen MM Vleggaar FP Tytgat KM Siersema PD van Buuren HR High lifetime risk of cancer in primary sclerosing cholangitis J Hepatol 2009 50 1 158 64 10.1016/j.jhep.2008.08.013 19012991 · DOI
  9. [10]Elsabbagh M Divan G Koh YJ Kim YS Kauchali S Marciń C Montiel-Nava C Patel V Paula CS Wang C Yasamy MT Fombonne E Global prevalence of autism and other pervasive developmental disorders Autism Res 2012 5 3 160 179 10.1002/aur.239 22495912 PMC3763210 · DOI · Paper page
  10. [11]Greenwood M. The natural duration of cancer. In: Reports on Public Health and Medical Subjects: 1926 vol. 33. p. 1–26. Her Majesty’s Stationery Off London.
  11. [12]Hvidtfeldt UA Gerster M Knudsen LB Keiding N Are low Danish fertility rates explained by changes in timing of births Scand J Public Health 2010 38 4 426 33 10.1177/1403494810364682 20215486 · DOI
  12. [13]Kaplan EL Meier P Nonparametric estimation from incomplete observations J Am Stat Assoc 1958 53 282 457 81 10.1080/01621459.1958.10501452 · DOI · Paper page
  13. [14]Marubini E Valsecchi MG Analysing Survival Data from Clinical Trials and Observational Studies 1995 Chichester Wiley
  14. [15]Mok PL Antonsen S Pedersen CB Appleby L Shaw J Webb RT National cohort study of absolute risk and age-specific incidence of multiple adverse outcomes between adolescence and early middle age BMC Public Health 2015 15 920 10.1186/s12889-015-2249-5 26386672 PMC4575432 · DOI
  15. [16]Nicolajsen CW Dickenson MH Budtz-Lilly J Eldrup N Frequency of cancer in patients operated on for acute peripheral arterial thrombosis and the impact on prognosis J Vasc Surg 2015 62 6 1598 606 10.1016/j.jvs.2015.06.223 26384760 · DOI
  16. [18]Parner ET Schendel DE Thorsen P Autism prevalence trends over time in denmark: changes in prevalence and age at diagnosis Arch Pediatr Adolesc Med 2008 162 12 1150 6 10.1001/archpedi.162.12.1150 19047542 · DOI
  17. [19]Pedersen CB Mors O Bertelsen A Waltoft BL Agerbo E McGrath JJ Mortensen PB Eaton WW A comprehensive nationwide study of the incidence rate and lifetime risk for treated mental disorders JAMA Psychiatry 2014 71 5 573 81 10.1001/jamapsychiatry.2014.16 24806211 · DOI
  18. [20]Rhiem K Engel C Graeser M Zachariae S Kast K Kiechle M Ditsch N Janni W Mundhenke C Golatta M Varga D Preisler-Adams S Heinrich T Bick U Gadzicki D Briest S Meindl A Schmutzler RK The risk of contralateral breast cancer in patients from brca1/2 negative high risk families as compared to patients from brca1 or brca2 positive families: a retrospective cohort study Breast Cancer Res 2012 14 6 R156 10.1186/bcr3369 23216834 PMC4053142 · DOI
  19. [21]Stapling ND Kimber AC Collett D Roderick PJ Dependent censoring in piecewise exponential survival models Stat Methods Med Res 2015 24 3 325 41 10.1177/0962280214544018 25038073 · DOI
  20. [22]Tsiatis A A nonidentifiability aspect of the problem of competing risks Proc Natl Acad Sci USA 1975 72 1 20 22 10.1073/pnas.72.1.20 1054494 PMC432231 · DOI

Cited by

Sorted by citations

Authors
Hansen, S. N., Overgaard, M., Andersen, P. K., & Parner, E. T.
Affiliations
  • Aarhus University (DK)
  • University of Copenhagen (DK)
Corresponding author
Hansen, Stefan N.
Venue
BMC Medical Research Methodology
Published
2017-01-11
Volume
17
Issue
1
Pages
7-7
ISSN
1471-2288 (ISSN-L)
OpenAlex
W2575064036
Cited by
24
References
1
Citations by year
2026: 1 · 2025: 4 · 2024: 4 · 2023: 2 · 2022: 4 · 2021: 2 · 2020: 2 · 2019: 3 · 2018: 1 · 2017: 1
FWCI
1.33
Type
journal article
Language
en
Open access
Licence
cc-by
Locations
  • BMC Medical Research Methodology (publishedVersion, cc-by)
  • PubMed Central (publishedVersion, cc-by)
  • PubMed (publishedVersion)
  • Research at the University of Copenhagen (University of Copenhagen) (publishedVersion, cc-by)
  • DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
  • Scopus (Elsevier) (submittedVersion, other-oa)
Topics
  • Physical Sciences › Mathematics › Statistics and Probability › Statistical Methods in Epidemiology
  • Physical Sciences › Mathematics › Statistics and Probability › Statistical Methods and Inference
  • Physical Sciences › Mathematics › Statistics and Probability › Advanced Causal Inference Techniques
Keywords
cumulative incidence, Kaplan-Meier estimator, Aalen-Johansen estimator, proportional hazards model, staggered entry, stratified analysis, disease risk assessment
MeSH terms
Autism Spectrum Disorder, Adolescent, Adult, Algorithms, Attention Deficit Disorder with Hyperactivity, Mental Disorders, Child, Computer Simulation, Denmark, Female, Finland, Tourette Syndrome, Humans, Male, Middle Aged, Models, Theoretical, Obsessive-Compulsive Disorder, Risk Factors, Time Factors, Incidence, Prevalence, Proportional Hazards Models, Risk Assessment, Kaplan-Meier Estimate, Young Adult

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