The DOI matches its Crossref record; 15 of the 15 references it cites were found in a registry or an index.
HiCPlotter integrates genomic data with interaction matrices
Open accessAbstract
Metazoan genomic material is folded into stable non-randomly arranged chromosomal structures that are tightly associated with transcriptional regulation and DNA replication. Various factors including regulators of pluripotency, long non-coding RNAs, or the presence of architectural proteins have been implicated in regulation and assembly of the chromatin architecture. Therefore, comprehensive visualization of this multi-faceted structure is important to unravel the connections between nuclear architecture and transcriptional regulation. Here, we present an easy-to-use open-source visualization tool, HiCPlotter, to facilitate juxtaposition of Hi-C matrices with diverse genomic assay outputs, as well as to compare interaction matrices between various conditions. https://github.com/kcakdemir/HiCPlotter.
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Background
Cited by
Cooler: scalable storage for Hi-C data and other genomically labeled arrays
Abdennur, N., & Mirny, L. A. (2020) · Bioinformatics · doi:10.1093/bioinformatics/btz540 · Cited by 1,759
Allelic reprogramming of 3D chromatin architecture during early mammalian development
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Disruption of chromatin folding domains by somatic genomic rearrangements in human cancer
Akdemir, K. C., Le, V. T., Chandran, S., Li, Y., Verhaak, R. G., Beroukhim, R., Campbell, P. J., Chin, L., Dixon, J. R., Futreal, P. A., et al. (2020) · Nature Genetics · doi:10.1038/s41588-019-0564-y · Cited by 283
Self-citationIntrinsic Dynamics of a Human Gene Reveal the Basis of Expression Heterogeneity
Rodriguez, J., Ren, G., Day, C. R., Zhao, K., Chow, C. C., & Larson, D. R. (2019) · Cell · doi:10.1016/j.cell.2018.11.026 · Cited by 265
Hi-C analyses with GENOVA: a case study with cohesin variants
van der Weide, R. H., van den Brand, T., Haarhuis, J. H. I., Teunissen, H., Rowland, B. D., & de Wit, E. (2021) · NAR Genomics and Bioinformatics · doi:10.1093/nargab/lqab040 · Cited by 161
Metadata
- Authors
- Akdemir, K. C., & Chin, L.
- Venue
- Genome Biology
- Published
- 2015-09-21
- Volume
- 16
- Issue
- 1
- Pages
- 198-198
- ISSN
- 1465-6906 (ISSN-L)
- 1474-760X
- OpenAlex
- W1915573037
- Cited by
- 211
- References
- 15
- FWCI
- 4.25
- Type
- journal article
- Language
- en
- Open access
- gold
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