Cited by 10Epilepsy research and treatmentPharmacological Effects and Toxicity StudiesGenetics and Neurodevelopmental Disorders

Gene variations of glutamate metabolism pathway and epilepsy

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Feng, Yan, Zhang, Cuirong, Wei, Zihan, Li, Guoyan, Gan, Yajing, Liu, Chao, Deng, Yanchun·2022·Acta Epileptologica

Abstract

Background: Epilepsy is a paroxysmal disorder of the brain, caused by an imbalance of neuronal excitation and inhibition. Glutamate is the most important excitatory neurotransmitter in the brain and plays an important role in epileptogenesis. Mutations in genes at any step/component of the glutamate metabolic pathway may lead to the development of epilepsy or epileptic encephalopathy. Methods: Clinical history of 3 epilepsy patients with genetic variations of the glutamate metabolism pathway was collected. Electroencephalogram recording and magnetic resonance imaging were performed in each patient. We also reviewed recent literature for a variety of the genetic variations involved in epilepsy. Results: Case 1 was a SLC1A2 mutation-carrier diagnosed with developmental and epileptic encephalopathy (DEE) 41, whose seizures decreased after start of the ketogenic diet. Case 2 carried a GRIN2A gene mutation and was seizure-free for three years after taking levetiracetam and vitamin B6. Case 3 was a GRIN2B mutation-carrier diagnosed with DEE 27, who seizures diminished after taking oxcarbazepine. Conclusions: Preclinical and clinical evidence supports the therapeutic potential of glutamatergic signaling-targeting treatments for epilepsy. More studies are needed to discover novel DEE-related genetic mutations in the glutamate metabolic pathway.

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  • Loss or dysfunction of SLC1A2 has been implicated in multiple neurodegenerative and neuropsychiatric disorders, including AD where it is closely associated with cognitive decline.

    “Loss or dysfunction of SLC1A2 has been implicated in multiple neurodegenerative and neuropsychiatric disorders, including AD where it is closely associated with cognitive decline [126–131].”

    From Tau Ablation Rewires Brain Cell Programs in Health and Restores Function in Disease (2026) · cites this paper as [127]

    The Glutamate transport section links SLC1A2 mutations to developmental epileptic encephalopathy and reports progressive neuronal death in knockout mice. It does not link SLC1A2 to multiple neurodegenerative or neuropsychiatric disorders, Alzheimer’s disease, or cognitive decline. In the Conclusions table, “AD” means autosomal dominant, not Alzheimer’s disease; no page numbers are available in our copy. (LLM, conf=0.85)

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Research works printed but not linked: 63

  1. Wang H, Chen D, He J, He Y, Liu L, Zhou D. Trend of sudden unexpected death in epilepsy incidence rate in rural west china. Front Neurol. 2021;12:735201.
  2. Nakamura E. One hundred years since the discovery of the "Umami" taste from seaweed broth by kikunae ikeda, who transcended his time. Chem Asian J. 2011;6(7):1659-63.
  3. Petroff OAC. GABA and glutamate in the human brain. Neuroscientist. 2002;8(6):562-73.
  4. Hanada T. Ionotropic glutamate receptors in epilepsy: a review focusing on AMPA and NMDA receptors. Biomolecules. 2020;10(3).
  5. Eid T, Gruenbaum SE, Dhaher R, Lee TW, Zhou Y, Danbolt NC. The glutamate-glutamine cycle in epilepsy. Adv Neurobiol. 2016;13:351-400.
  6. Olney JW, Collins RC, Sloviter RS. Excitotoxic mechanisms of epileptic brain damage. Adv Neurol. 1986;44:857-77.
  7. Bak LK, Schousboe A, Waagepetersen HS. The glutamate/GABA-glu- tamine cycle: aspects of transport, neurotransmitter homeostasis and ammonia transfer. J Neurochem. 2006;98(3):641-53.
  8. Modi WS, Pollock DD, Mock BA, Banner C, Renauld JC, Van Snick J. Regional iocalization of the human glutaminase (GLS) and inter- leukin-9 (IL9) genes by in situ hybridization. Cytogenet Cell Genet. 1991;57(2-3):114-6.
  9. Van Kuilenburg ABP, Tarailo-Graovac M, Richmond PA, Drogemoller BI, Pouladi MA, Leen R, et al. Glutaminase deficiency caused by short tan- dem repeat expansion in GLS. N Engl J Med. 2019;380(15):1433-41.
  10. Rumping L, Buttner B, Maier O, Rehmann H, Lequin M, Schlump JU, et al. Identification of a loss-of-function mutation in the context of glutami- nase deficiency and neonatal epileptic encephalopathy. JAMA Neurol. 2019;76(3):342-50.
  11. Rahman S. Pathophysiology of mitochondrial disease causing epilepsy and status epilepticus. Epilepsy Behav. 2015;49:71-5.
  12. Masson J, Darmon M, Conjard A, Chuhma N, Ropert N, Thoby-Brisson M, et al. Mice lacking brain/kidney phosphate-activated glutaminase have impaired glutamatergic synaptic transmission, altered breathing, disor- ganized goal-directed behavior and die shortly after birth. J Neurosci. 2006;26(17):4660-71.
  13. Sener A, Malaisse WJ. L-leucine and a nonmetabolized analogue activate pancreatic islet glutamate dehydrogenase. Nature. 1980;288(5787):187-9.
  14. Hudson RC, Daniel RM. L-glutamate dehydrogenases: distribution, prop- erties and mechanism. Comp Biochem Physiol B. 1993;106(4):767-92.
  15. Bahi-Buisson N, El Sabbagh S, Soufflet C, Escande F, Boddaert N, Valayan- nopoulos V, et al. Myoclonic absence epilepsy with photosensitivity and a gain of function mutation in glutamate dehydrogenase. Seizure. 2008;17(7):658-64.
  16. Kapoor RR, Flanagan SE, Fulton P, Chakrapani A, Chadefaux B, Ben-Omran T, et al. Hyperinsulinism-hyperammonaemia syndrome: novel mutations in the GLUD1 gene and genotype-phenotype correlations. Eur J Endo- crinol. 2009;161(5):731-5.
  17. Nakano K, Kobayashi K, Okano Y, Aso K, Ohtsuka Y. Intractable absence seizures in hyperinsulinism-hyperammonemia syndrome. Pediatr Neurol. 2012;47(2):119-22.
  18. Su C, Liang XJ, Li WJ, Wu D, Liu M, Cao BY, et al. Clinical and molecular spectrum of glutamate dehydrogenase gene defects in 26 chinese congenital hyperinsulinemia patients. J Diabetes Res. 2018;2018:2802540.
  19. Senniappan S, Shanti B, James C, Hussain K. Hyperinsulinaemic hypo- glycaemia: genetic mechanisms, diagnosis and management. J Inherit Metab Dis. 2012;35(4):589-601.
  20. Malthankar-Phatak GH, de Lanerolle N, Eid T, Spencer DD, Behar KL, Spen- cer SS, et al. Differential glutamate dehydrogenase (GDH) activity profile in patients with temporal lobe epilepsy. Epilepsia. 2006;47(8):1292-9.
  21. Pajarillo E, Rizor A, Lee J, Aschner M, Lee E. The role of astrocytic gluta- mate transporters GLT-1 and GLAST in neurological disorders: potential targets for neurotherapeutics. Neuropharmacology. 2019;161: 107559.
  22. Watanabe T, Morimoto K, Hirao T, Suwaki H, Watase K, Tanaka K. Amygdala-kindled and pentylenetetrazole-induced seizures in glutamate transporter GLAST-deficient mice. Brain Res. 1999;845(1):92-6.
  23. Lehre KP, Danbolt NC. The number of glutamate transporter subtype molecules at glutamatergic synapses: chemical and stereological quanti- fication in young adult rat brain. J Neurosci. 1998;18(21):8751-7.
  24. Holmseth S, Dehnes Y, Huang YH, Follin-Arbelet VV, Grutle NJ, Mylonakou MN, et al. The density of EAAC1 (EAAT3) glutamate transporters expressed by neurons in the mammalian CNS. J Neurosci. 2012;32(17):6000-13.
  25. Dalet A, Bonsacquet J, Gaboyard-Niay S, Calin-Jageman I, Chidavaenzi RL, Venteo S, et al. Glutamate transporters EAAT4 and EAAT5 are expressed in vestibular hair cells and calyx endings. PLoS ONE. 2012;7(9): e46261.
  26. Dehnes Y, Chaudhry FA, Ullensvang K, Lehre KP, Storm-Mathisen J, Danbolt NC. The glutamate transporter EAAT4 in rat cerebellar Purkinje cells: a glutamate-gated chloride channel concentrated near the synapse in parts of the dendritic membrane facing astroglia. J Neurosci. 1998;18(10):3606-19.
  27. Epi KC. De novo mutations in SLC1A2 and CACNA1A are impor- tant causes of epileptic encephalopathies. Am J Hum Genet. 2016;99(2):287-98.
  28. Tanaka K, Watase K, Manabe T, Yamada K, Watanabe M, Takahashi K, et al. Epilepsy and exacerbation of brain injury in mice lacking the glutamate transporter GLT-1. Science. 1997;276(5319):1699-702.
  29. Guella I, McKenzie MB, Evans DM, Buerki SE, Toyota EB, Van Allen MI, et al. De novo mutations in YWHAG cause early-onset epilepsy. Am J Hum Genet. 2017;101(2):300-10.
  30. Stergachis AB, Pujol-Gimenez J, Gyimesi G, Fuster D, Albano G, Troxler M, et al. Recurrent SLC1A2 variants cause epilepsy via a dominant negative mechanism. Ann Neurol. 2019;85(6):921-6.
  31. Zhang Y, Dong H, Duan L, Yuan G, Liang W, Li Q, et al. SLC1A2 medi- ates refractory temporal lobe epilepsy with an initial precipitating injury by targeting the glutamatergic synapse pathway. IUBMB Life. 2019;71(2):213-22.
  32. Traynelis SF, Wollmuth LP, McBain CJ, Menniti FS, Vance KM, Ogden KK, et al. Glutamate receptor ion channels: structure, regulation, and func- tion. Pharmacol Rev. 2010;62(3):405-96.
  33. Soto D, Altafaj X, Sindreu C, Bayes A. Glutamate receptor mutations in psychiatric and neurodevelopmental disorders. Commun Integr Biol. 2014;7(1): e27887.
  34. Yuan HJ, Low CM, Moody OA, Jenkins A, Traynelis SF. Ionotropic GABA and glutamate receptor mutations and human neurologic diseases. Mol Pharmacol. 2015;88(1):203-17.
  35. Kelsch W, Li ZJ, Eliava M, Goengrich C, Monyer H. GluN2B-containing NMDA receptors promote wiring of adult-born neurons into olfactory bulb circuits. J Neurosci. 2012;32(36):12603-11.
  36. Lemke JR, Geider K, Helbig KL, Heyne HO, Schutz H, Hentschel J, et al. Delineating the GRIN1 phenotypic spectrum: a distinct genetic NMDA receptor encephalopathy. Neurology. 2016;86(23):2171-8.
  37. Ohba C, Shiina M, Tohyama J, Haginoya K, Lerman-Sagie T, Okamoto N, et al. GRIN1 mutations cause encephalopathy with infantile-onset epi- lepsy, and hyperkinetic and stereotyped movement disorders. Epilepsia. 2015;56(6):841-8.
  38. Endele S, Rosenberger G, Geider K, Popp B, Tamer C, Stefanova I, et al. Mutations in GRIN2A and GRIN2B encoding regulatory subunits of NMDA receptors cause variable neurodevelopmental phenotypes. Nat Genet. 2010;42(11):1021-6.
  39. Carvill GL, Regan BM, Yendle SC, O'Roak BJ, Lozovaya N, Bruneau N, et al. GRIN2A mutations cause epilepsy-aphasia spectrum disorders. Nat Genet. 2013;45(9):1073-6.
  40. Lemke JR, Lal D, Reinthaler EM, Steiner I, Nothnagel M, Alber M, et al. Mutations in GRIN2A cause idiopathic focal epilepsy with rolandic spikes. Nat Genet. 2013;45(9):1067-72.
  41. Pierson TM, Yuan H, Marsh ED, Fuentes-Fajardo K, Adams DR, Markello T, et al. GRIN2A mutation and early-onset epileptic encephalopa- thy: personalized therapy with memantine. Ann Clin Transl Neurol. 2014;1(3):190-8.
  42. Venkateswaran S, Myers KA, Smith AC, Beaulieu CL, Schwartzentruber JA, Majewski J, et al. Whole-exome sequencing in an individual with severe global developmental delay and intractable epilepsy identifies a novel, de novo GRIN2A mutation. Epilepsia. 2014;55(7):E75-9.
  43. Chen WJ, Tankovic A, Burger PB, Kusumoto H, Traynelis SF, Yuan HJ. Func- tional evaluation of a de novo GRIN2A mutation identified in a patient with profound global developmental delay and refractory epilepsy. Mol Pharmacol. 2017;91(4):317-U88.
  44. Platzer K, Yuan H, Schutz H, Winschel A, Chen W, Hu C, et al. GRIN2B encephalopathy: novel findings on phenotype, variant cluster- ing, functional consequences and treatment aspects. J Med Genet. 2017;54(7):460-70.
  45. Li D, Yuan H, Ortiz-Gonzalez XR, Marsh ED, Tian L, McCormick EM, et al. GRIN2D recurrent de novo dominant mutation causes a severe epileptic encephalopathy treatable with NMDA receptor channel blockers. Am J Hum Genet. 2016;99(4):802-16.
  46. Swanger SA, Chen W, Wells G, Burger PB, Tankovic A, Bhattacharya S, et al. Mechanistic insight into NMDA receptor dysregulation by rare variants in the GluN2A and GluN2B agonist binding domains. Am J Hum Genet. 2016;99(6):1261-80.
  47. Camp CR, Yuan HJ. GRIN2D/GluN2D NMDA receptor: Unique features and its contribution to pediatric developmental and epileptic encephalopa- thy. Eur J Paediatr Neurol. 2020;24:89-99.
  48. XiangWei WS, Kannan V, Xu YC, Kosobucki GJ, Schulien AJ, Kusumoto H, et al. Heterogeneous clinical and functional features of GRIN2D-related developmental and epileptic encephalopathy. Brain. 2019;142:3009-27.
  49. Tsuchida N, Hamada K, Shiina M, Kato M, Kobayashi Y, Tohyama J, et al. GRIN2D variants in three cases of developmental and epileptic encepha- lopathy. Clin Genet. 2018;94(6):538-47.
  50. Eriksson M, Nilsson A, Froelich-Fabre S, Akesson E, Dunker J, Seiger A, et al. Cloning and expression of the human N-methyl-D-aspartate receptor subunit NR3A. Neurosci Lett. 2002;321(3):177-81.
  51. Murillo A, Navarro AI, Puelles E, Zhang Y, Petros TJ, Perez-Otano I. Tempo- ral dynamics and neuronal specificity of grin3a expression in the mouse forebrain. Cereb Cortex. 2021;31(4):1914-26.
  52. Wee KS, Zhang Y, Khanna S, Low CM. Immunolocalization of NMDA receptor subunit NR3B in selected structures in the rat forebrain, cerebel- lum, and lumbar spinal cord. J Comp Neurol. 2008;509(1):118-35.
  53. Martenson JS, Tomita S. Synaptic localization of neurotransmitter recep- tors: comparing mechanisms for AMPA and GABA(A) receptors. Curr Opin Pharmacol. 2015;20:102-8.
  54. Martin S, Chamberlin A, Shinde DN, Hempel M, Strom TM, Schreiber A, et al. De novo variants in GRIA4 lead to intellectual disability with or without seizures and gait abnormalities. Am J Hum Genet. 2017;101(6):1013-20.
  55. Beyer B, Deleuze C, Letts VA, Mahaffey CL, Boumil RM, Lew TA, et al. Absence seizures in C3H/HeJ and knockout mice caused by mutation of the AMPA receptor subunit Gria4. Hum Mol Genet. 2008;17(12):1738-49.
  56. Crepel V, Mulle C. Physiopathology of kainate receptors in epilepsy. Curr Opin Pharmacol. 2015;20:83-8.
  57. Reuter MS, Tawamie H, Buchert R, Gebril OH, Froukh T, Thiel C, et al. Diagnostic yield and novel candidate genes by exome sequencing in 152 consanguineous families with neurodevelopmental disorders. JAMA Psychiat. 2017;74(3):293-9.
  58. Marafi D, Mitani T, Isikay S, Hertecant J, Almannai M, Manickam K, et al. Biallelic GRM7 variants cause epilepsy, microcephaly, and cerebral atro- phy. Ann Clin Transl Neurol. 2020;7(5):610-27.
  59. Fisher NM, Seto M, Lindsley CW, Niswender CM. Metabotropic glutamate receptor 7: a new therapeutic target in neurodevelopmental disorders. Front Mol Neurosci. 2018;11:387.
  60. Roifman M, Niles KM, MacNeil L, Blaser S, Noor A, Godoy R, et al. Homozy- gous GLUL deletion is embryonically viable and leads to glutamine synthetase deficiency. Clin Genet. 2020;98(6):613-9.
  61. Haberle J, Gorg B, Rutsch F, Schmidt E, Toutain A, Benoist JF, et al. Congen- ital glutamine deficiency with glutamine synthetase mutations. N Engl J Med. 2005;353(18):1926-33.
  62. Haberle J, Shahbeck N, Ibrahim K, Hoffmann GF, Ben-Omran T. Natural course of glutamine synthetase deficiency in a 3 year old patient. Mol Genet Metab. 2011;103(1):89-91.
  63. Unal O, Ceylaner S, Akin R. A very rare etiology of hypotonia and seizures: congenital glutamine synthetase deficiency. Neuropediatrics. 2019;50(1):51-3.

Cited by

Sorted by citations

Authors
Feng, Y., Zhang, C., Wei, Z., Li, G., Gan, Y., Liu, C., & Deng, Y.
Affiliations
  • Xi'an Medical University (CN)
  • Xijing Hospital (CN)
Corresponding author
Deng, Yanchun
Venue
Acta Epileptologica
Published
2022-06-23
Volume
4
Issue
1
ISSN
  • 2096-9384 (ISSN-L)
  • 2524-4434
OpenAlex
W4283316102
Cited by
10
References
2
Citations by year
2026: 3 · 2025: 3 · 2024: 1 · 2023: 3
FWCI
1.14
Type
journal article
Language
en
Open access
Locations
  • Acta Epileptologica (publishedVersion, cc-by)
  • DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
Funders
National Key research and development program precision medicine project-cohort study (2017YFC0907700)
Topics
  • Health Sciences › Medicine › Psychiatry and Mental health › Epilepsy research and treatment
  • Health Sciences › Medicine › Pediatrics, Perinatology and Child Health › Pharmacological Effects and Toxicity Studies
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genetics and Neurodevelopmental Disorders
Keywords
epilepsy, glutamate metabolism, genetic mutations, developmental and epileptic encephalopathy, GLT-1, GRIN2A, NR2B subunit, ketogenic diet, levetiracetam, vitamin B6, oxcarbazepine, glutamatergic signaling, epileptogenesis

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