Student or educator? Sign up with your school email and get 6 months of Pro free.
CoChat
Sign Up
Cited by 561

The DOI matches its Crossref record; 334 of the 334 references it cites were found in a registry or an index.

Phytochrome Signaling Mechanisms

Open access
Li, Jigang, Li, Gang, Wang, Haiyang, Wang Deng, Xing·2011·The Arabidopsis Book
DOI 10.1199/tab.0148
Open this paper in CoChat — free account

Abstract

Phytochromes are red (R)/far-red (FR) light photoreceptors that play fundamental roles in photoperception of the light environment and the subsequent adaptation of plant growth and development. There are five distinct phytochromes in Arabidopsis thaliana, designated phytochrome A (phyA) to phyE. phyA is light-labile and is the primary photoreceptor responsible for mediating photomorphogenic responses in FR light, whereas phyB-phyE are light stable, and phyB is the predominant phytochrome regulating de-etiolation responses in R light. Phytochromes are synthesized in the cytosol in their inactive Pr form. Upon light irradiation, phytochromes are converted to the biologically active Pfr form, and translocate into the nucleus. phyB can enter the nucleus by itself in response to R light, whereas phyA nuclear import depends on two small plant-specific proteins FAR-RED ELONGATED HYPOCOTYL 1 (FHY1) and FHY1-LIKE (FHL). Phytochromes may function as light-regulated serine/threonine kinases, and can phosphorylate several substrates, including themselves in vitro. Phytochromes are phosphoproteins, and can be dephosphorylated by a few protein phosphatases. Photoactivated phytochromes rapidly change the expression of light-responsive genes by repressing the activity of CONSTITUTIVE PHOTOMORPHOGENIC 1 (COP1), an E3 ubiquitin ligase targeting several photomorphogenesis-promoting transcription factors for degradation, and by inducing rapid phosphorylation and degradation of Phytochrome-Interacting Factors (PIFs), a group of bHLH transcription factors repressing photomorphogenesis. Phytochromes are targeted by COP1 for degradation via the ubiquitin/26S proteasome pathway.

Overview

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Integrity signals

Registry

Crossref · 10.1199/tab.0148

Cites

334 of 334 references verified0 citation errors · 0 not checkable

Statistics

Verification

Claims the paper makes

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

The self-check needs the paper’s full text.

Citations

Cites

Items 201–334 of 334

Research works printed but not linked: 63

  1. 10.1046/j.1365-313X.1997.11030421.x · doi:10.1046/j.1365-313x.1997.11030421.x
  2. Andel F., 1996, Biochemistry, 35, 15997, 10.1021/bi962175k · doi:10.1021/bi962175k
  3. Araki T., 1993, Plant J., 4, 801, 10.1046/j.1365-313X.1993.04050801.x · doi:10.1046/j.1365-313x.1993.04050801.x
  4. Bailey P.C., 2003, Plant Cell, 15, 2497, 10.1105/tpc.151140 · doi:10.1105/tpc.151140
  5. Ballesteros M.L., 2001, Genes Dev., 15, 2613, 10.1101/gad.915001 · doi:10.1101/gad.915001
  6. Barnes S.A., 1996, Plant J., 10, 1155, 10.1046/j.1365-313X.1996.10061155.x · doi:10.1046/j.1365-313x.1996.10061155.x
  7. Biermann B.J., 1994, Plant Physiol., 105, 243, 10.1104/pp.105.1.243 · doi:10.1104/pp.105.1.243
  8. Boylan M.T., 1996, Protoplasma, 195, 12, 10.1007/BF01279182 · doi:10.1007/bf01279182
  9. Bu Q., 2011, J. Biol. Chem., 286, 12066, 10.1074/jbc.M110.186882 · doi:10.1074/jbc.m110.186882
  10. Casal J.J., 2002, Plant Physiol., 129, 1127, 10.1104/pp.010977 · doi:10.1104/pp.010977
  11. 10.1104/pp.118.1.19 · doi:10.1104/pp.118.1.19
  12. 10.1093/jexbot/49.319.127 · doi:10.1093/jexbot/49.319.127
  13. Chen H., 2006, Plant Cell, 18, 1991, 10.1105/tpc.106.043224 · doi:10.1105/tpc.106.043224
  14. Chen M., 2003, Proc Natl. Acad. Sci. USA, 100, 14493, 10.1073/pnas.1935989100 · doi:10.1073/pnas.1935989100
  15. 10.1105/tpc.5.9.1081 · doi:10.1105/tpc.5.9.1081
  16. Fairchild C.D., 2000, Genes Dev., 14, 2377
  17. Garner W.W., 1920, J. Agric. Res., 18, 553
  18. Han Y.J., 2010, Plant Cell Physiol., 51, 596, 10.1093/pcp/pcq025 · doi:10.1093/pcp/pcq025
  19. 10.1104/pp.128.1.194 · doi:10.1104/pp.128.1.194
  20. Hirschfeld M., 1998, Genetics, 149, 523, 10.1093/genetics/149.2.523 · doi:10.1093/genetics/149.2.523
  21. 10.1105/tpc.12.7.1063 · doi:10.1105/tpc.12.7.1063
  22. Hoecker U., 1998, Plant Cell, 10, 19
  23. Hoecker U., 2001, J. Biol. Chem., 276, 38173, 10.1074/jbc.M103140200 · doi:10.1074/jbc.m103140200
  24. Jabben M., 1989, Plant Physiol., 90, 380, 10.1104/pp.90.2.380 · doi:10.1104/pp.90.2.380
  25. Jang I.C., 2005, Genes Dev., 19, 593, 10.1101/gad.1247205 · doi:10.1101/gad.1247205
  26. Jang I.C., 2007, Genes Dev., 21, 2100, 10.1101/gad.1568207 · doi:10.1101/gad.1568207
  27. 10.1126/science.285.5426.406 · doi:10.1126/science.285.5426.406
  28. Jordan E.T., 1996, Plant J., 9, 243, 10.1046/j.1365-313X.1996.09020243.x · doi:10.1046/j.1365-313x.1996.09020243.x
  29. Jordan E.T., 1997, Plant Physiol., 115, 693, 10.1104/pp.115.2.693 · doi:10.1104/pp.115.2.693
  30. Khanna R., 2003, Plant Physiol., 133, 1530, 10.1104/pp.103.030007 · doi:10.1104/pp.103.030007
  31. Kim I.S., 1989, Photochem. Photobiol., 49, 319, 10.1111/j.1751-1097.1989.tb04113.x · doi:10.1111/j.1751-1097.1989.tb04113.x
  32. 10.1105/tpc.104.023879 · doi:10.1105/tpc.104.023879
  33. 10.1046/j.1365-313X.1996.10040625.x · doi:10.1046/j.1365-313x.1996.10040625.x
  34. Lagarias J.C., 1980, J. Am. Chem. Soc., 102, 4821, 10.1021/ja00534a042 · doi:10.1021/ja00534a042
  35. 10.1073/pnas.94.22.11792 · doi:10.1073/pnas.94.22.11792
  36. 10.1021/bi970708z · doi:10.1021/bi970708z
  37. Laubinger S., 2003, Plant J., 35, 373, 10.1046/j.1365-313X.2003.01813.x · doi:10.1046/j.1365-313x.2003.01813.x
  38. Laubinger S., 2004, Plant Cell, 16, 2293, 10.1105/tpc.104.024216 · doi:10.1105/tpc.104.024216
  39. Li G., 2011, Nat. Cell. Biol., 13, 616, 10.1038/ncb2219 · doi:10.1038/ncb2219
  40. Lin R., 2008, Plant Physiol., 148, 981, 10.1104/pp.108.120436 · doi:10.1104/pp.108.120436
  41. Martin-Tryon E.L., 2007, Plant Physiol., 143, 473, 10.1104/pp.106.088757 · doi:10.1104/pp.106.088757
  42. Mateos J.L., 2006, J. Biol. Chem., 281, 34421, 10.1074/jbc.M603538200 · doi:10.1074/jbc.m603538200
  43. McMichael R.W., 1990, Biochemistry, 29, 3872, 10.1021/bi00468a011 · doi:10.1021/bi00468a011
  44. 10.1105/tpc.105.033464 · doi:10.1105/tpc.105.033464
  45. Nagatani A., 2010, Curr. Opin. Plant Biol., 13, 565, 10.1016/j.pbi.2010.07.002 · doi:10.1016/j.pbi.2010.07.002
  46. Nemhauser J., 2002, The Arabidopsis Book, 1, e0054, 10.1199/tab.0054 · doi:10.1199/tab.0054
  47. 10.1105/tpc.13.7.1639 · doi:10.1105/tpc.13.7.1639
  48. 10.1046/j.1365-313x.1998.00290.x · doi:10.1046/j.1365-313x.1998.00290.x
  49. Ouyang X., 2011, Plant Cell, 23, 2514, 10.1105/tpc.111.085126 · doi:10.1105/tpc.111.085126
  50. Phee B.K., 2008, Biochem J., 415, 247, 10.1042/BJ20071555 · doi:10.1042/bj20071555
  51. Quail P.H., 2011, Curr. Biol., 20, R504, 10.1016/j.cub.2010.04.014 · doi:10.1016/j.cub.2010.04.014
  52. Reed J.W., 2000, Plant Physiol., 122, 1149, 10.1104/pp.122.4.1149 · doi:10.1104/pp.122.4.1149
  53. 10.1021/bi980575x · doi:10.1021/bi980575x
  54. Saijo Y., 2003, Genes Dev., 17, 2642, 10.1101/gad.1122903 · doi:10.1101/gad.1122903
  55. Searle I., 2004, EMBO J., 23, 1217, 10.1038/sj.emboj.7600117 · doi:10.1038/sj.emboj.7600117
  56. Shen Y., 2005, Plant Physiol., 139, 1234, 10.1104/pp.105.067645 · doi:10.1104/pp.105.067645
  57. 10.1105/tpc.3.12.1263 · doi:10.1105/tpc.3.12.1263
  58. Speth V., 1986, Planta, 168, 299, 10.1007/BF00392353 · doi:10.1007/bf00392353
  59. Wagner D., 1996, Proc. Natl. Acad. Sci. USA, 93, 4011, 10.1073/pnas.93.9.4011 · doi:10.1073/pnas.93.9.4011
  60. Wang H., 2002, EMBO J., 21, 1339, 10.1093/emboj/21.6.1339 · doi:10.1093/emboj/21.6.1339
  61. Wong Y.S., 1989, Plant Physiol., 91, 709, 10.1104/pp.91.2.709 · doi:10.1104/pp.91.2.709
  62. Yang J., 2005, Plant Cell, 17, 804, 10.1105/tpc.104.030205 · doi:10.1105/tpc.104.030205
  63. Zhou Y.C., 2002, Plant Physiol., 128, 1098, 10.1104/pp.010811 · doi:10.1104/pp.010811

Cited by

See all 561

Metadata

Authors
Li, J., Li, G., Wang, H., & Wang Deng, X.
Venue
The Arabidopsis Book
Publisher
BioOne
Published
2011-01
Volume
9
Pages
e0148
ISSN
1543-8120 (ISSN-L)
DOI
10.1199/tab.0148
OpenAlex
W2152382014
Cited by
561
References
334
FWCI
18.89
Type
journal article
Language
en
Open access
bronze

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review

Data sources

Bibliographic data: Semantic Scholar, OpenAlex, Crossref.

Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).

Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.