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Increased Burden of Rare Sequence Variants in GnRH-Associated Genes in Women With Hypothalamic Amenorrhea

Delaney, Angela, Burkholder, Adam B, Lavender, Christopher A, Plummer, Lacey, Mericq, Veronica, Merino, Paulina M, Quinton, Richard, Lewis, Katie L, Meader, Brooke N, Albano, Alessandro, Shaw, Natalie D, Welt, Corrine K, Martin, Kathryn A, Seminara, Stephanie B, Biesecker, Leslie G, Bailey-Wilson, Joan E, Hall, Janet E·2021·The Journal of Clinical Endocrinology & Metabolism

Abstract

Context: Functional hypothalamic amenorrhea (HA) is a common, acquired form of hypogonadotropic hypogonadism that occurs in the setting of energy deficits and/or stress. Variability in individual susceptibility to these stressors, HA heritability, and previous identification of several rare sequence variants (RSVs) in genes associated with the rare disorder, isolated hypogonadotropic hypogonadism (IHH), in individuals with HA suggest a possible genetic contribution to HA susceptibility. Objective: We sought to determine whether the burden of RSVs in IHH-related genes is greater in women with HA than controls. Design: We compared patients with HA to control women. Setting: The study was conducted at secondary referral centers. Patients and Other Participants: Women with HA (n = 106) and control women (ClinSeq study; n = 468). Interventions: We performed exome sequencing in all patients and controls. Main Outcome Measure(s): The frequency of RSVs in 53 IHH-associated genes was determined using rare variant burden and association tests. Results: RSVs were overrepresented in women with HA compared with controls (P = .007). Seventy-eight heterozygous RSVs in 33 genes were identified in 58 women with HA (36.8% of alleles) compared to 255 RSVs in 41 genes among 200 control women (27.2%). Conclusions: Women with HA are enriched for RSVs in genes that cause IHH, suggesting that variation in genes associated with gonadotropin-releasing hormone neuronal ontogeny and function may be a major determinant of individual susceptibility to developing HA in the face of diet, exercise, and/or stress.

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  1. Reame, 1985, Pulsatile gonadotropin secretion in women with hypothalamic amenorrhea: evidence that reduced frequency of gonadotropin-releasing hormone secretion is the mechanism of persistent anovulation, J Clin Endocrinol Metab., 61, 851, 10.1210/jcem-61-5-851 · DOI
  2. Crowley, 1985, The physiology of gonadotropin-releasing hormone (GnRH) secretion in men and women, Recent Prog Horm Res., 41, 473
  3. Perkins, 1999, Neuroendocrine abnormalities in hypothalamic amenorrhea: spectrum, stability, and response to neurotransmitter modulation, J Clin Endocrinol Metab., 84, 1905
  4. Perkins, 2001, Aetiology, previous menstrual function and patterns of neuro-endocrine disturbance as prognostic indicators in hypothalamic amenorrhoea, Hum Reprod., 16, 2198, 10.1093/humrep/16.10.2198 · DOI
  5. Münster, 1992, Secondary amenorrhoea: prevalence and medical contact—a cross-sectional study from a Danish county, Br J Obstet Gynaecol., 99, 430, 10.1111/j.1471-0528.1992.tb13763.x · DOI
  6. Feicht, 1978, Secondary amenorrhoea in athletes, Lancet., 2, 1145, 10.1016/S0140-6736(78)92294-8 · DOI · Paper page
  7. Kreipe, 1989, Menstrual cycle abnormalities and subclinical eating disorders: a preliminary report, Psychosom Med., 51, 81, 10.1097/00006842-198901000-00008 · DOI
  8. Prokai, 2016, Neuroprotection via reduction in stress: altered menstrual patterns as a marker for stress and implications for long-term neurologic health in women, Int J Mol Sci., 17, 2147, 10.3390/ijms17122147 · DOI
  9. Warren, 1980, The effects of exercise on pubertal progression and reproductive function in girls, J Clin Endocrinol Metab., 51, 1150, 10.1210/jcem-51-5-1150 · DOI · Paper page
  10. Bullen, 1985, Induction of menstrual disorders by strenuous exercise in untrained women, N Engl J Med., 312, 1349, 10.1056/NEJM198505233122103 · DOI · Paper page
  11. Marcus, 2001, Psychological correlates of functional hypothalamic amenorrhea, Fertil Steril., 76, 310, 10.1016/S0015-0282(01)01921-5 · DOI
  12. Schliep, 2015, Perceived stress, reproductive hormones, and ovulatory function: a prospective cohort study, Epidemiology., 26, 177, 10.1097/EDE.0000000000000238 · DOI
  13. Bruni, 2011, Body composition variables and leptin levels in functional hypothalamic amenorrhea and amenorrhea related to eating disorders, J Pediatr Adolesc Gynecol., 24, 347, 10.1016/j.jpag.2011.06.004 · DOI
  14. Falsetti, 2002, Long-term follow-up of functional hypothalamic amenorrhea and prognostic factors, J Clin Endocrinol Metab., 87, 500, 10.1210/jcem.87.2.8195 · DOI
  15. Laughlin, 1998, Nutritional and endocrine-metabolic aberrations in women with functional hypothalamic amenorrhea, J Clin Endocrinol Metab., 83, 25
  16. Brundu, 2006, Increased cortisol in the cerebrospinal fluid of women with functional hypothalamic amenorrhea, J Clin Endocrinol Metab., 91, 1561, 10.1210/jc.2005-2422 · DOI
  17. Herod, 2011, Treatment with a CRH-R1 antagonist prevents stress-induced suppression of the central neural drive to the reproductive axis in female macaques, Am J Physiol Endocrinol Metab., 300, E19, 10.1152/ajpendo.00224.2010 · DOI
  18. Sidhoum, 2014, Reversal and relapse of hypogonadotropic hypogonadism: resilience and fragility of the reproductive neuroendocrine system, J Clin Endocrinol Metab., 99, 861, 10.1210/jc.2013-2809 · DOI
  19. Loucks, 2003, Luteinizing hormone pulsatility is disrupted at a threshold of energy availability in regularly menstruating women, J Clin Endocrinol Metab., 88, 297, 10.1210/jc.2002-020369 · DOI · Paper page
  20. Centeno, 2007, Hypothalamic gonadotrophin-releasing hormone expression in female monkeys with different sensitivity to stress, J Neuroendocrinol., 19, 594, 10.1111/j.1365-2826.2007.01566.x · DOI
  21. Shaw, 2011, Expanding the phenotype and genotype of female GnRH deficiency, J Clin Endocrinol Metab., 96, E566, 10.1210/jc.2010-2292 · DOI
  22. Biesecker, 2009, The ClinSeq Project: piloting large-scale genome sequencing for research in genomic medicine, Genome Res., 19, 1665, 10.1101/gr.092841.109 · DOI · Paper page
  23. Ng, 2013, Interpreting secondary cardiac disease variants in an exome cohort, Circ Cardiovasc Genet., 6, 337, 10.1161/CIRCGENETICS.113.000039 · DOI
  24. Johnston, 2015, Individualized iterative phenotyping for genome-wide analysis of loss-of-function mutations, Am J Hum Genet., 96, 913, 10.1016/j.ajhg.2015.04.013 · DOI · Paper page
  25. Lek, 2016, Analysis of protein-coding genetic variation in 60,706 humans, Nature., 536, 285, 10.1038/nature19057 · DOI · Paper page
  26. Karczewski, Variation across 141,456 human exomes and genomes reveals the spectrum of loss-of-function intolerance across human protein-coding genes. [Published online ahead of print January 30, 2019.], bioRxiv.
  27. Stenson, 2017, The Human Gene Mutation Database: towards a comprehensive repository of inherited mutation data for medical research, genetic diagnosis and next-generation sequencing studies, Hum Genet., 136, 665, 10.1007/s00439-017-1779-6 · DOI · Paper page
  28. Neale, 2011, Testing for an unusual distribution of rare variants, PloS Genet., 7, e1001322, 10.1371/journal.pgen.1001322 · DOI · Paper page
  29. Wu, 2011, Rare-variant association testing for sequencing data with the sequence kernel association test, Am J Hum Genet., 89, 82, 10.1016/j.ajhg.2011.05.029 · DOI · Paper page
  30. PLINK/SEQ: A library for the analysis of genetic variation data website
  31. Moutsianas, 2015, The power of gene-based rare variant methods to detect disease-associated variation and test hypotheses about complex disease, PLoS Genet., 11, e1005165, 10.1371/journal.pgen.1005165 · DOI
  32. Kim, 2008, Mutations in CHD7, encoding a chromatin-remodeling protein, cause idiopathic hypogonadotropic hypogonadism and Kallmann syndrome, Am J Hum Genet., 83, 511, 10.1016/j.ajhg.2008.09.005 · DOI · Paper page
  33. Kircher, 2014, A general framework for estimating the relative pathogenicity of human genetic variants, Nat Genet., 46, 310, 10.1038/ng.2892 · DOI · Paper page
  34. Adzhubei, 2010, A method and server for predicting damaging missense mutations, Nat Methods., 7, 248, 10.1038/nmeth0410-248 · DOI · Paper page
  35. Ng, 2001, Predicting deleterious amino acid substitutions, Genome Res., 11, 863, 10.1101/gr.176601 · DOI · Paper page
  36. Schwarz, 2010, MutationTaster evaluates disease-causing potential of sequence alterations, Nat Methods., 7, 575, 10.1038/nmeth0810-575 · DOI · Paper page
  37. Zhu, 2015, A shared genetic basis for self-limited delayed puberty and idiopathic hypogonadotropic hypogonadism, J Clin Endocrinol Metab., 100, E646, 10.1210/jc.2015-1080 · DOI
  38. Howard, 2016, IGSF10 mutations dysregulate gonadotropin-releasing hormone neuronal migration resulting in delayed puberty, EMBO Mol Med., 8, 626, 10.15252/emmm.201606250 · DOI
  39. Sykiotis, 2010, Oligogenic basis of isolated gonadotropin-releasing hormone deficiency, Proc Natl Acad Sci U S A., 107, 15140, 10.1073/pnas.1009622107 · DOI · Paper page
  40. Pitteloud, 2007, Digenic mutations account for variable phenotypes in idiopathic hypogonadotropic hypogonadism, J Clin Invest., 117, 457, 10.1172/JCI29884 · DOI · Paper page
  41. Hutchins, 2016, CCDC141 mutation identified in anosmic hypogonadotropic hypogonadism (Kallmann syndrome) alters GnRH neuronal migration, Endocrinology., 157, 1956, 10.1210/en.2015-1846 · DOI
  42. Turan, 2017, CCDC141 mutations in idiopathic hypogonadotropic hypogonadism, J Clin Endocrinol Metab., 102, 1816, 10.1210/jc.2016-3391 · DOI
  43. Vazquez, 2018, SIRT1 mediates obesity- and nutrient-dependent perturbation of pubertal timing by epigenetically controlling Kiss1 expression, Nat Commun., 9, 4194, 10.1038/s41467-018-06459-9 · DOI
  44. Bessa, 2018, Methylome profiling of healthy and central precocious puberty girls, Clin Epigenetics., 10, 146, 10.1186/s13148-018-0581-1 · DOI

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Metadata

Authors
Delaney, A., Burkholder, A. B., Lavender, C. A., Plummer, L., Mericq, V., Merino, P. M., Quinton, R., Lewis, K. L., Meader, B. N., Albano, A., Shaw, N. D., Welt, C. K., Martin, K. A., Seminara, S. B., Biesecker, L. G., Bailey-Wilson, J. E., & Hall, J. E.
Affiliations
  • National Institute of Environmental Health Sciences, National Institutes of Health (NIH), Research Triangle Park, North Carolina
  • Harvard Reproductive Sciences Center and Reproductive Endocrine Unit, Massachusetts General Hospital, Boston, Massachusetts
  • Institute of Maternal and Child Research, University of Chile, Santiago, Chile
  • Institute of Genetic Medicine, Newcastle University, Newcastle-upon-Tyne, UK
  • Medical Genomics & Metabolic Genetics Branch, National Human Genome Research Institute, NIH, Bethesda, Maryland
  • Division of Endocrinology, Metabolism and Diabetes, University of Utah, Salt Lake City, Utah
  • Computational and Statistical Genomics Branch, National Human Genome Research Institute, NIH, Baltimore, Maryland
Venue
The Journal of Clinical Endocrinology & Metabolism
Published
2020-09-01
Volume
106
Issue
3
Pages
e1441-e1452
ISSN
  • 0021-972X
  • 1945-7197
Cited by
21
References
6
Language
en
Funders
  • National Institute of Environmental Health Sciences (ZID ES103323-01)
  • Eunice Kennedy Shriver National Institute of Child Health and Human Development (ZIAHD008919)
  • Harvard Reproductive Endocrine Sciences Center (P50 HD028138, K24 HD01290, R01 HD043341)
  • National Institutes of Health
  • National Human Genome Research Institute
  • Yale Center for Mendelian Genomics (M#UM1HG006504-05)
  • National Heart, Lung, and Blood Institute

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CoChat. (2026). Citation check: Increased Burden of Rare Sequence Variants in GnRH-Associated Genes in Women With Hypothalamic Amenorrhea. https://app.cochat.ai/papers/10.1210/clinem/dgaa609
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Delaney, A., Burkholder, A. B., Lavender, C. A., Plummer, L., Mericq, V., Merino, P. M., Quinton, R., Lewis, K. L., Meader, B. N., Albano, A., Shaw, N. D., Welt, C. K., Martin, K. A., Seminara, S. B., Biesecker, L. G., Bailey-Wilson, J. E., & Hall, J. E. (2021). Increased Burden of Rare Sequence Variants in GnRH-Associated Genes in Women With Hypothalamic Amenorrhea. The Journal of Clinical Endocrinology & Metabolism. https://doi.org/10.1210/clinem/dgaa609

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