A regulatory code for neurogenic gene expression in the Drosophila embryo
Markstein, Michele, Zinzen, Robert, Markstein, Peter, Yee, Ka-Ping, Erives, Albert, Stathopoulos, Angela, Levine, Michael·2004·Development
Cited by (164)
Items 101–164 of 164
- Microfluidics for High-Throughput Quantitative Studies of Early DevelopmentThomas J. Levario, Bomyi Lim, Stanislav Y. Shvartsman, Hang Lu · 2016 · Annual Review of Biomedical Engineering
- Identification of Ind transcription activation and repression domains required for dorsoventral patterning of the CNSTonia L. Von Ohlen, Cade Moses · 2009 · Mechanisms of Development
- BMP-dependent gene repression cascade in Drosophila eggshell patterningEnrica Charbonnier, Alisa Fuchs, Lily S. Cheung, Mrinal Chayengia, Ville Veikkolainen, Janine Seyfferth, Stanislav Y. Shvartsman, George Pyrowolakis · 2015 · Developmental Biology
- Enhancer diversity and the control of a simple pattern of Drosophila CNS midline cell expressionJoseph C. Pearson, Stephen T. Crews · 2014 · Developmental Biology
- Ancestral and conserved cis-regulatory architectures in developmental control genesMark Rebeiz, Brian Castro, Feng Liu, Feng Yue, James W. Posakony · 2011 · Developmental Biology
- Divergent MLS1 Promoters Lie on a Fitness Plateau for Gene ExpressionAndrew C. Bergen, Gerilyn M. Olsen, Justin C. Fay · 2016 · Molecular Biology and Evolution
- Identification of an upstream regulatory element reveals a novel requirement for Ind activity in maintaining ind expressionTonia L. Von Ohlen, Canda Harvey, Manasa Panda · 2006 · Mechanisms of Development
- The Nature, Extent, and Consequences of Genetic Variation in the opa Repeats of Notch in DrosophilaClinton Rice, D. Beekman, Li-Ping Liu, Albert J. Erives · 2015 · G3: Genes, Genomes, Genetics
- Deciphering deuterostome phylogeny: molecular, morphological, and palaeontological perspectivesAndrew Benjamin Smith, Billie J. Swalla · 2009 · Oxford University Press eBooks
- The evolution of nervous system centralizationDetlev Arendt, Alexandru Stefan Denes, Gáspár Jékely, Kristin Tessmar‐Raible · 2009 · Oxford University Press eBooks
- The Ediacaran emergence of bilaterians: congruence between the genetic and the geological fossil recordsKevin J. Peterson, James Anthony Cotton, James G. Gehlîng, Davide Pisani · 2009 · Oxford University Press eBooks
- Involvement of co-repressors Groucho and CtBP in the regulation of single-minded in DrosophilaAnja C. Nagel, Irmgard Wech, Daniela Schwinkendorf, Anette Preiss · 2007 · Hereditas
- Invertebrate Problematica: kinds, causes, and solutionsRonald A. Jenner, Dallen J. Timothy, D. Timothy J. Littlewood · 2009 · Oxford University Press eBooks
- Computational Methods for Locating and Analyzing Conserved Gene Regulatory DNA ElementsKimmo Palin · 2007 · Työväentutkimus Vuosikirja
- Zelda potentiates transcription factor binding to zygotic enhancers by increasing local chromatin accessibility during early Drosophila melanogaster embryogenesisXiaoyong Li, Michael B. Eisen · 2018 · bioRxiv (Cold Spring Harbor Laboratory)
- Genetic regulation and function of epidermal growth factor receptor signalling in patterning of the embryonicDrosophilabrainDavid Jussen, Janina von Hilchen, Rolf Urbach · 2016 · Open Biology
- Integration of Orthogonal Signaling by the Notch and Dpp Pathways in DrosophilaElizabeth Stroebele, Albert J. Erives · 2016 · Genetics
- Twine: display and analysis of cis-regulatory modulesJoseph C. Pearson, Stephen T. Crews · 2013 · Bioinformatics
- Conserved and novel enhancers in the Aedes aegypti single-minded locus recapitulate embryonic ventral midline gene expressionIsabella Schember, William R Reid, Geyenna Sterling-Lentsch, Marc S. Halfon · 2024 · PLoS Genetics
- Making evolutionary predictions about the structure of development and morphology: beyond the neo-Darwinian and constraints paradigmsIsaac Salazar‐Ciudad · 2008 · Cambridge University Press eBooks
- Ind represses msh expression in the intermediate column of the Drosophila neuroectoderm, through direct interaction with upstream regulatory DNATonia L. Von Ohlen, Cade Moses, Will Poulson · 2009 · Developmental Dynamics
- Animal Evolution2009
- The earliest fossil record of the animals and its significanceGraham E. Budd · 2009 · Oxford University Press eBooks
- Enhancer architecture and chromatin accessibility constrain phenotypic space during developmentRafael Galupa, Gilberto Álvarez-Canales, Noa Ottilie Borst, Timothy Fuqua, Lautaro Gándara, Natalia Misunou, Kerstin Richter, Mariana R. P. Alves, Esther Karumbi, Melinda Liu Perkins et al. · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
- Mesodermal repression of single-minded in Drosophila embryo is mediated by a cluster of Snail-binding sites proximal to the early promoterKye Won Park, Joung‐Woo Hong · 2012 · BMB Reports
- Fitting structure to function in gene regulatory networksEllen V. Rothenberg · 2017 · History & Philosophy of the Life Sciences
- The evolution of developmental gene networks: lessons from comparative studies on holometabolous insectsAndrew Peel · 2009 · Oxford University Press eBooks
- Discovery and information-theoretic characterization of transcription factor binding sites that act cooperativelyJacob Clifford, Christoph Adami · 2015 · Physical Biology
- c-REDUCE: Incorporating sequence conservation to detect motifs that correlate with expressionKaterina J. Kechris, Hao Li · 2008 · BMC Bioinformatics
- The origins and evolution of the EcdysozoaMaximilian J. Telford, Sarah J. Bourlat, Andrew D. Economou, Daniel Papillon, Omar Rota‐Stabelli · 2009 · Oxford University Press eBooks
- Origins of metazoan body plans: the larval revolutionRudolf A. Raff · 2009 · Oxford University Press eBooks
- Reassembling animal evolution: a four-dimensional puzzleMaximilian J. Telford, Dallen J. Timothy, D. Timothy J. Littlewood · 2009 · Oxford University Press eBooks
- Conserved developmental processes and the evolution of novel traits: wounds, embryos, veins, and butterfly eyespotsPatrícia Beldade, Suzanne V. Saenko · 2009 · Oxford University Press eBooks
- Sequence Analyses to Study the Evolutionary History and Cis-Regulatory Elements of Hedgehog GenesFerenc Müller, Anne‐Gaëlle Borycki · 2007 · Methods in molecular biology
- Spatial-scERA: a method for reconstructing spatial single-cell enhancer activity in multicellular organismsBaptiste Alberti, Séverine Vincent, Isabelle Stévant, Damien Lajoignie, Hélène Tarayre, Juliette Mendes, Sergio Sarnataro, Paul Villoutreix, Yad Ghavi-Helm · 2025 · Nucleic Acids Research
- Target gene responses differ when transcription factor levels are acutely decreased by nuclear export versus degradationJames M. McGehee, Angelike Stathopoulos · 2024 · Development
- Identification and characterization of conserved regulatory elements by comparative genomicsKrish Jon Mathavan · 2008 · National University of Singapore
- Genomic dimensions of Su(H)-targeted regulatory belts in DrosophilaElizabeth Stroebele, Timothy Fuqua, Melvyn Warren, Danielle K. Herrig, Christian Noblett, Xin Yuan, Albert J. Erives · 2016 · bioRxiv (Cold Spring Harbor Laboratory)
- Beyond linear sequence comparisons: the use of genome-level characters for phylogenetic reconstructionJeffrey L. Boore, Susan I. Fuerstenberg · 2009 · Oxford University Press eBooks
- The Sheep and the Goats: Distinguishing transcriptional enhancers in a complex chromatin landscapeAnne Sonnenschein, Ian M. Dworkin, David N. Arnosti · 2018 · bioRxiv (Cold Spring Harbor Laboratory)
- The animal in the genome: comparative genomics and evolutionRichard R. Copley · 2009 · Oxford University Press eBooks
- Zur Entwicklung des Nervensystems: Wandernde Zellen, Zielfindung und Selbstorganisation bei der SynapsenbildungWerner A. Müller, Monika Hassel · 2003 · Springer-Lehrbuch
- Discrimination in partnership: compartment-specific interactions of Hox proteinsK. G. Guruharsha, Krishnaswamy VijayRaghavan · 2004 · Journal of Genetics
- Identification of downstream targets of Alk signaling in Drosophila melanogasterGaurav K. Varshney · 2008 · KTH Publication Database DiVA (KTH Royal Institute of Technology)
- Dorsal-Ventral Patterning and Gene Regulation in the Early Embryo of Drosophila melanogasterMayra García · 2012
- Thinking about evolution by taking development on boardAlessandro Minelli · 2008 · Cambridge University Press eBooks
- Analysis of Cooperative Transcription Factor Binding at the Sequence LevelJacob Clifford · 2015 · Michigan State University Libraries
- Computational Methods for Inferring Transcription Factor Binding SitesVyacheslav Morozov · 2012 · uO Research (University of Ottawa)
- Chromatin Topology and Transcription in MyogenesisKatherine I. Fisher-Aylor · 2016 · CaltechTHESIS (California Institute of Technology)
- Unbiased genome-scale identification of cis -regulatory modules in the human genome by GRAMcCatherine L. Guay, Jongmin Nam · 2018 · bioRxiv (Cold Spring Harbor Laboratory)
- Shadow Enhancers Provide Precision and Robustness for the Patterning of the Precellular Drosophila EmbryoMichael Perry · 2011 · eScholarship (California Digital Library)
- 2. Mise en place du plan d’organisation de la drosophileLewis Wolpert, C. Tickle, Alfonso Martinez Arias, P. Lawrence, A. Lumsden, Elizabeth Robertson, Jim C. Smith · 2017 · Biologie du développement
- Zur Entwicklung des Nervensystems: wandernde Zellen, Zielfindung und Selbstorganisation bei der Synapsenbildung2006 · Springer eBooks
- Molecular genetic insights into deuterostome evolution from the direct-developing hemichordateSaccoglossus kowalevskiiChristopher J. Lowe · 2009 · Oxford University Press eBooks
- REFERENCES2006 · Elsevier eBooks
- Foreword2009 · Oxford University Press eBooks
- Copyright Page2009 · Oxford University Press eBooks
- Contributors2009 · Oxford University Press eBooks
- Introduction2009 · Oxford University Press eBooks
- Transcriptional Regulatory Activity as the Default State for DNA in Animal DevelopmentRafael Galupa, Gilberto Álvarez-Canales, Noa Ottilie Borst, Timothy Fuqua, Lautaro Gándara, Natalia Misunou, Kerstin Richter, Mariana R. P. Alves, Esther Karumbi, Melinda Liu Perkins et al. · 2022 · SSRN Electronic Journal
- Inferring chromatin architecture at a single locus through probabilistic in situ DNA localizationMinh Tam Le, James M. McGehee, Leslie Dunipace, David Rumph, Angelike Stathopoulos · 2026 · Nature Communications
- Identification à l'échelle génomique des éléments cis-régulateurs actifs au cours du développement des ascidiesMathieu Gineste · 2013
- An asymmetric Ising model for spatial gene regulationMélody Merle · 2019
- GENOMIC APPROACHES TO IDENTIFYING TRANSCRIPTIONAL TARGETS OF AP-1, CREB AND JNK SIGNALING IN THE NERVOUS SYSTEM OF DROSOPHILA MELANOGASTERPaul D. Etter · 2005 · UA Campus Repository (The University of Arizona)