Mitotic bookmarking in development and stem cells
Open accessAbstract
The changes imposed on the nucleus, chromatin and its regulators during mitosis lead to the dismantlement of most gene regulatory processes. However, an increasing number of transcriptional regulators are being identified as capable of binding their genomic targets during mitosis. These so-called ‘mitotic bookmarking factors’ encompass transcription factors and chromatin modifiers that are believed to convey gene regulatory information from mother to daughter cells. In this Primer, we review mitotic bookmarking processes in development and stem cells and discuss the interest and potential importance of this concept with regard to epigenetic regulation and cell fate transitions involving cellular proliferation.
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DNA methylation was an early proposed carrier of epigenetic information, and later work showed chromatin proteins and noncoding RNAs also matter.
“DNA methylation was proposed early on as a carrier of epigenetic information with subsequent work revealing that chromatin proteins and noncoding RNAs are also important for this process [10][11][12][13][14] .”
From Advances in epigenetics link genetics to the environment and disease (2019) · cites this paper as [11]
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Transcription factors: from enhancer binding to developmental control
Spitz, F., & Furlong, E. E. M. (2012) · Nature Reviews Genetics · doi:10.1038/nrg3207 · Cited by 2,227 · see citing works
Stability and flexibility of epigenetic gene regulation in mammalian development
Reik, W. (2007) · Nature · doi:10.1038/nature05918 · Cited by 1,963 · cited 4× · see citing works
“Although epigenetic mechanisms (see Box 1) have mainly been linked to the maintenance of gene silencing (Reik, 2007; Steffen and Ringrose, 2014), evidence for a memory of gene activity does exist: the probability of transcribing a given gene after mitosis is significantly higher in cells derived from parent cells havi…”
BackgroundInfluentialAn operational definition of epigenetics: Figure 1.Preprint
Berger, S. L., Kouzarides, T., Shiekhattar, R., & Shilatifard, A. (2009) · Genes & Development · doi:10.1101/gad.1787609 · Cited by 1,889 · see citing works
Nora, E. P., Goloborodko, A., Valton, A.-L., Gibcus, J. H., Uebersohn, A., Abdennur, N., Dekker, J., Mirny, L. A., & Bruneau, B. G. (2017) · Cell · doi:10.1016/j.cell.2017.05.004 · Cited by 1,709 · cited 1× · see citing works
“As a general rule, low efficiency ChIP that does not allow the detection of 5-10% of contaminant chromatin (Festuccia et al., 2016a; Nora et al., 2017), and mitotic preparations with more than 5% of contaminant interphase cells, should be treated with caution.”
BackgroundCo-crystal structure of the HNF-3/fork head DNA-recognition motif resembles histone H5
Clark, K., Halay, E. D., Lai, E., & Burley, S. K. (1993) · Nature · doi:10.1038/364412a0 · Cited by 1,275 · see citing works
Regulation of HP1–chromatin binding by histone H3 methylation and phosphorylation
Fischle, W., Tseng, B. S., Dormann, H. L., Ueberheide, B. M., Garcia, B. A., Shabanowitz, J., Hunt, D. F., Funabiki, H., & Allis, C. D. (2005) · Nature · doi:10.1038/nature04219 · Cited by 996 · see citing works
Organization of the mitotic chromosome
Naumova, N., Imakaev, M., Fudenberg, G., Zhan, Y., Lajoie, B. R., Mirny, L. A., & Dekker, J. (2013) · Science · doi:10.1126/science.1236083 · Cited by 976 · cited 2× · see citing works
“This reorganisation is largely mediated by alterations to the three-dimensional topology of the chromatin and the acquisition of mitotic-specific chromatin loops of ∼100 kb (Dekker, 2014; Naumova et al., 2013).”
BackgroundThe double bromodomain protein Brd4 binds to acetylated chromatin during interphase and mitosis
Dey, A., Chitsaz, F., Abbasi, A., Misteli, T., & Ozato, K. (2003) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1433065100 · Cited by 672 · see citing works
SirT2 is a histone deacetylase with preference for histone H4 Lys 16 during mitosisPreprint
Vaquero, A., Scher, M. B., Lee, D. H., Sutton, A., Cheng, H.-L., Alt, F. W., Serrano, L., Sternglanz, R., & Reinberg, D. (2006) · Genes & Development · doi:10.1101/gad.1412706 · Cited by 670 · see citing works
Histone H3 serine 10 phosphorylation by Aurora B causes HP1 dissociation from heterochromatin
Hirota, T., Lipp, J., Toh, B., & Peters, J. (2005) · Nature · doi:10.1038/nature04254 · Cited by 662 · see citing works
Chromatin replication and epigenome maintenance
Alabert, C., & Groth, A. (2012) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm3288 · Cited by 586 · see citing works
Synthesis of RNA and protein during mitosis in mammalian tissue culture cells
Prescott, D. M., & Bender, M. A. (1962) · Experimental Cell Research · doi:10.1016/0014-4827(62)90176-3 · Cited by 520 · see citing works
Displacement of sequence-specific transcription factors from mitotic chromatin
Martínez‐Balbás, M. A., Dey, A., Rabindran, S. K., Ozato, K., & Wu, C. (1995) · Cell · doi:10.1016/0092-8674(95)90231-7 · Cited by 454 · see citing works
Yan, J., Enge, M., Whitington, T., Dave, K., Liu, J., Sur, I., Schmierer, B., Jolma, A., Kivioja, T., Taipale, M., et al. (2013) · Cell · doi:10.1016/j.cell.2013.07.034 · Cited by 376 · see citing works
Mitotic repression of the transcriptional machinery
Gottesfeld, J. M. (1997) · Trends in Biochemical Sciences · doi:10.1016/s0968-0004(97)01045-1 · Cited by 368 · see citing works
Yang, Z., He, N., & Zhou, Q. (2007) · Molecular and Cellular Biology · doi:10.1128/mcb.01020-07 · Cited by 349 · see citing works
Condensin I stabilizes chromosomes mechanically through a dynamic interaction in live cells.
Gerlich, D., Hirota, T., Koch, B., Peters, J., & Ellenberg, J. (2006) · Current Biology · doi:10.1016/j.cub.2005.12.040 · Cited by 340 · see citing works
Identifying and mitigating bias in next-generation sequencing methods for chromatin biology
Meyer, C. A., & Liu, X. S. (2014) · Nature Reviews Genetics · doi:10.1038/nrg3788 · Cited by 329 · see citing works
Brd4 Marks Select Genes on Mitotic Chromatin and Directs Postmitotic Transcription
Dey, A., Nishiyama, A., Karpova, T., McNally, J. G., & Ozato, K. (2009) · Molecular Biology of the Cell · doi:10.1091/mbc.e09-05-0380 · Cited by 319 · see citing works
What are memories made of? How Polycomb and Trithorax proteins mediate epigenetic memory
Steffen, P. A., & Ringrose, L. (2014) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm3789 · Cited by 318 · see citing works
Developmental reprogramming after chromosome transfer into mitotic mouse zygotes
Egli, D. M., Rosains, J., Birkhoff, G., & Eggan, K. C. (2007) · Nature · doi:10.1038/nature05879 · Cited by 301 · see citing works
A Cascade of Histone Modifications Induces Chromatin Condensation in Mitosis
Wilkins, B. J., Rall, N. A., Ostwal, Y. B., Kruitwagen, T., Hiragami-Hamada, K., Winkler, M., Barral, Y., Fischle, W., & Neumann, H. (2014) · Science · doi:10.1126/science.1244508 · Cited by 275 · see citing works
A dynamic mode of mitotic bookmarking by transcription factors
Teves, S. S., An, L., Hansen, A. S., Xie, L., Darzacq, X., & Tjian, R. (2016) · eLife · doi:10.7554/elife.22280 · Cited by 274 · see citing works
Gene bookmarking accelerates the kinetics of post-mitotic transcriptional re-activation
Zhao, R., Nakamura, T., Fu, Y., Lazar, Z., & Spector, D. L. (2011) · Nature Cell Biology · doi:10.1038/ncb2341 · Cited by 254 · see citing works
Mitotic inactivation of a human SWI/SNF chromatin remodeling complexPreprint
Sif, S., Stukenberg, P. T., Kirschner, M. W., & Kingston, R. E. (1998) · Genes & Development · doi:10.1101/gad.12.18.2842 · Cited by 254 · see citing works
Mitotic Transcription and Waves of Gene Reactivation During Mitotic Exit
Palozola, K. C., Donahue, G., Liu, H., Grant, G., Becker, J., Coté, A., Yu, H.-T., Raj, A., & Zaret, K. (2017) · Science · doi:10.1126/science.aal4671 · Cited by 245 · see citing works
Chapter 6 The Cell Cycle, Cell Lineages, and Cell Differentiation
Holtzer, H., Weintraub, H. M., Mayne, R., & Mochan, B. S. (1972) · Current topics in developmental biology/Current Topics in Developmental Biology · doi:10.1016/s0070-2153(08)60073-3 · Cited by 243 · see citing works
Histone H3 phosphorylation – A versatile chromatin modification for different occasions
Sawicka, A., & Seiser, C. (2012) · Biochimie · doi:10.1016/j.biochi.2012.04.018 · Cited by 242 · see citing works
Tissue-Specific Mitotic Bookmarking by Hematopoietic Transcription Factor GATA1
Kadauke, S., Udugama, M., Pawlicki, J. M., Achtman, J. C., Jain, D., Cheng, Y., Hardison, R. C., & Blobel, G. A. (2012) · Cell · doi:10.1016/j.cell.2012.06.038 · Cited by 232 · see citing works
Brero, A., Easwaran, H., Nowak, D., Grunewald, I., Cremer, T. J., Leonhardt, H., & Cardoso, M. C. (2005) · The Journal of Cell Biology · doi:10.1083/jcb.200502062 · Cited by 229 · see citing works
Mediators of reprogramming: transcription factors and transitions through mitosis
Egli, D. M., Birkhoff, G., & Eggan, K. C. (2008) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm2439 · Cited by 225 · see citing works
Bookmarking by specific and nonspecific binding of FoxA1 pioneer factor to mitotic chromosomesPreprint
Caravaca, J. M., Donahue, G., Becker, J. S., He, X., Charles, V., & Zaret, K. S. (2013) · Genes & Development · doi:10.1101/gad.206458.112 · Cited by 218 · see citing works
Epigenetics, cellular memory and gene regulation
Henikoff, S., & Greally, J. M. (2016) · Current Biology · doi:10.1016/j.cub.2016.06.011 · Cited by 215 · see citing works
Ptashne, M. (2013) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1305399110 · Cited by 208 · see citing works
Kruhlak, M. J., Hendzel, M. J., Fischle, W., Bertos, N., Hameed, S., Yang, X., Verdin, E. M., & Bazett‐Jones, D. P. (2001) · Journal of Biological Chemistry · doi:10.1074/jbc.m100290200 · Cited by 207 · see citing works
Dynamics of human DNA topoisomerases IIα and IIβ in living cells
Christensen, M. O., Kobæk-Larsen, M., Barthelmes, H. U., Hock, R., Andersen, C. L., Kjeldsen, E., Knudsen, B. R., Westergaard, O., Boege, F., & Mielke, C. (2002) · The Journal of Cell Biology · doi:10.1083/jcb.200112023 · Cited by 200 · see citing works
Condensed mitotic chromatin is accessible to transcription factors and chromatin structural proteins
Chen, D., Dundr, M., Wang, C., Leung, A. K. L., Lamond, A. I., Misteli, T., & Huang, S. (2004) · The Journal of Cell Biology · doi:10.1083/jcb.200407182 · Cited by 200 · see citing works
Buchenau, P., Hodgson, J. W., Strutt, H. L., & Arndt‐Jovin, D. J. (1998) · The Journal of Cell Biology · doi:10.1083/jcb.141.2.469 · Cited by 198 · see citing works
Segil, N., Guermah, M., Hoffmann, A., Roeder, R. G., & Heintz, N. (1996) · Genes & Development · doi:10.1101/gad.10.19.2389 · Cited by 197 · see citing works
Annotating Nucleic Acid-Binding Function Based on Protein Structure
Stawiski, E. W., Gregoret, L. M., & Mandel‐Gutfreund, Y. (2003) · Journal of Molecular Biology · doi:10.1016/s0022-2836(03)00031-7 · Cited by 196 · see citing works
Blobel, G. A., Kadauke, S., Wang, E., Lau, A. W., Zuber, J. A., Chou, M. M., & Vakoc, C. R. (2009) · Molecular Cell · doi:10.1016/j.molcel.2009.12.001 · Cited by 194 · see citing works
Lau, P. N. I., & Cheung, P. (2011) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1012798108 · Cited by 191 · see citing works
Histone modifications and mitosis: countermarks, landmarks, and bookmarks
Wang, F., & Higgins, J. M. G. (2012) · Trends in Cell Biology · doi:10.1016/j.tcb.2012.11.005 · Cited by 189 · see citing works
Soufi, A., & Dalton, S. (2016) · Development · doi:10.1242/dev.142075 · Cited by 183 · see citing works
Replication‐independent chromatin loading of Dnmt1 during G2 and M phases
Easwaran, H., Schermelleh, L., Leonhardt, H., & Cardoso, M. C. (2004) · EMBO Reports · doi:10.1038/sj.embor.7400295 · Cited by 182 · see citing works
Quantitative analysis of chromatin compaction in living cells using FLIM–FRET
Llères, D., James, J. L., Swift, S., Norman, D., & Lamond, A. I. (2009) · The Journal of Cell Biology · doi:10.1083/jcb.200907029 · Cited by 176 · see citing works
Marking of active genes on mitotic chromosomes
Michelotti, E. F., Sanford, S., & Levens, D. (1997) · Nature · doi:10.1038/42282 · Cited by 175 · see citing works
Establishment and maintenance of heritable chromatin structure during early Drosophila embryogenesis
Blythe, S. A., & Wieschaus, E. F. (2016) · eLife · doi:10.7554/elife.20148 · Cited by 168 · see citing works
Voncken, J. W., Niessen, H. E. C., Neufeld, B., Rennefahrt, U. E. E., Dahlmans, V. E. H., Kubben, N., Holzer, B., Ludwig, S., & Rapp, U. R. (2004) · Journal of Biological Chemistry · doi:10.1074/jbc.m407155200 · Cited by 166 · see citing works
Rizzino, A. (2009) · WIREs Systems Biology and Medicine · doi:10.1002/wsbm.12 · Cited by 166 · see citing works
Raff, J. W., Kellum, R., & Alberts, B. (1994) · The EMBO Journal · doi:10.1002/j.1460-2075.1994.tb06943.x · Cited by 165 · see citing works
Mitotic Transcription Installs Sgo1 at Centromeres to Coordinate Chromosome Segregation
Liu, H., Qu, Q., Warrington, R. T., Rice, A. M., Cheng, N., & Yu, H. (2015) · Molecular Cell · doi:10.1016/j.molcel.2015.06.018 · Cited by 162 · see citing works
Young, D. W., Hassan, M. Q., Yang, X., Galindo, M. A., Javed, A., Zaidi, S. K., Furcinitti, P. S., Lapointe, D. S., Montecino, M. A., Lian, J. B., et al. (2007) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0611419104 · Cited by 162 · see citing works
Mechanism of hsp70i Gene Bookmarking
Xing, H., Wilkerson, D. C., Mayhew, C. N., Lubert, E. J., Skaggs, H. S., Goodson, M. L., Hong, Y., Park-Sarge, O.-K., & Sarge, K. D. (2005) · Science · doi:10.1126/science.1106478 · Cited by 161 · see citing works
How the cell cycle impacts chromatin architecture and influences cell fate
Ma, Y., Kanakousaki, K., & Buttitta, L. (2015) · Frontiers in Genetics · doi:10.3389/fgene.2015.00019 · Cited by 158 · see citing works
Mitotic binding of Esrrb marks key regulatory regions of the pluripotency network
Festuccia, N., Dubois, A., Vandormael-Pournin, S., Gallego Tejeda, E., Mouren, A., Bessonnard, S., Mueller, F., Proux, C., Cohen-Tannoudji, M., & Navarro, P. (2016) · Nature Cell Biology · doi:10.1038/ncb3418 · Cited by 158 · see citing works
Self-citationA mitotic transcriptional switch in polycystic kidney disease
Verdeguer, F., Corre, S. L., Fischer, E. A., Callens, C., Garbay, S., Doyen, A., Igarashi, P., Terzi, F., & Pontoglio, M. (2009) · Nature Medicine · doi:10.1038/nm.2068 · Cited by 156 · see citing works
Association of human TFIID–promoter complexes with silenced mitotic chromatin in vivo
Christova, R., & Oelgeschläger, T. (2001) · Nature Cell Biology · doi:10.1038/ncb733 · Cited by 155 · see citing works
Molecular features of cellular reprogramming and development
Smith, Z. D., Sindhu, C., & Meissner, A. (2016) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm.2016.6 · Cited by 154 · see citing works
A role for mitotic bookmarking of SOX2 in pluripotency and differentiationPreprint
Deluz, C., Friman, E. T., Strebinger, D., Benke, A., Raccaud, M., Callegari, A., Leleu, M., Manley, S., & Suter, D. M. (2016) · Genes & Development · doi:10.1101/gad.289256.116 · Cited by 154 · see citing works
Voncken, J. W., Schweizer, D., Aagaard, L., Sattler, L., Jantsch, M. F., & van Lohuizen, M. (1999) · Journal of Cell Science · doi:10.1242/jcs.112.24.4627 · Cited by 153 · see citing works
TBP Dynamics in Living Human Cells: Constitutive Association of TBP with Mitotic Chromosomes
Chen, D., Hinkley, C. S., Henry, R. W., & Huang, S. (2002) · Molecular Biology of the Cell · doi:10.1091/mbc.01-10-0523 · Cited by 150 · see citing works
Nucleosome fragility reveals novel functional states of chromatin and poises genes for activationPreprint
Xi, Y., Yao, J., Chen, R., Li, W., & He, X. (2011) · Genome Research · doi:10.1101/gr.117101.110 · Cited by 143 · see citing works
Widespread mitotic bookmarking by histone marks and transcription factors in pluripotent stem cells
Liu, Y.-Y., Pelham-Webb, B., Giammartino, D. C. D., Li, J.-X., Kim, D., Kita, K., Saiz, N., Garg, V., Doane, A., Giannakakou, P., et al. (2017) · Cell Reports · doi:10.1016/j.celrep.2017.04.067 · Cited by 142 · see citing works
A Temporal Threshold for Formaldehyde Crosslinking and Fixation
Schmiedeberg, L., Skene, P., Deaton, A. M., & Bird, A. P. (2009) · PLoS ONE · doi:10.1371/journal.pone.0004636 · Cited by 139 · see citing works
H2A.Z Maintenance during Mitosis Reveals Nucleosome Shifting on Mitotically Silenced Genes
Kelly, T. K., Miranda, T. B., Liang, G., Berman, B. P., Lin, J., Tanay, A., & Jones, P. A. (2010) · Molecular Cell · doi:10.1016/j.molcel.2010.08.026 · Cited by 137 · see citing works
Pallier, C., Scaffidi, P., Chopineau-Proust, S., Agresti, A., Nordmann, P., Bianchi, M. E., & Maréchal, V. (2003) · Molecular Biology of the Cell · doi:10.1091/mbc.e02-09-0581 · Cited by 137 · see citing works
A common mechanism for mitotic inactivation of C2H2 zinc finger DNA-binding domainsPreprint
Dovat, S., Ronni, T., Russell, D., Ferrini, R., Cobb, B. S., & Smale, S. T. (2002) · Genes & Development · doi:10.1101/gad.1040502 · Cited by 136 · see citing works
Burke, L. J., Zhang, R., Bartkuhn, M., Tiwari, V. K., Tavoosidana, G., Kurukuti, S., Weth, C., Leers, J., Galjart, N., OHLSSON, R. I., et al. (2005) · The EMBO Journal · doi:10.1038/sj.emboj.7600793 · Cited by 134 · see citing works
Sutani, T., Sakata, T., Nakato, R., Masuda, K., Ishibashi, M., Yamashita, D., Suzuki, Y., Hirano, T., Bando, M., & Shirahige, K. (2015) · Nature Communications · doi:10.1038/ncomms8815 · Cited by 123 · see citing works
Rapid exchange of mammalian topoisomerase IIα at kinetochores and chromosome arms in mitosis
Tavormina, P. A., Côme, M.-G., Hudson, J. R., Mo, Y.-Y., Beck, W. T., & Gorbsky, G. J. (2002) · The Journal of Cell Biology · doi:10.1083/jcb.200202053 · Cited by 123 · see citing works
Multiple Structural Maintenance of Chromosome Complexes at Transcriptional Regulatory Elements
Dowen, J. M., Bilodeau, S., Orlando, D. A., Hübner, M. R., Abraham, B. J., Spector, D. L., & Young, R. A. (2013) · Stem Cell Reports · doi:10.1016/j.stemcr.2013.09.002 · Cited by 122 · see citing works
Cell Cycle–regulated Expression of the Muscle Determination Factor Myf5 in Proliferating Myoblasts
Lindon, C., Montarras, D., & Pinset, C. (1998) · The Journal of Cell Biology · doi:10.1083/jcb.140.1.111 · Cited by 122 · see citing works
3D-CLEM Reveals that a Major Portion of Mitotic Chromosomes Is Not Chromatin
Booth, D. G., Beckett, A. J., Molina, Ò., Samejima, I., Masumoto, H., Kouprina, N., Larionov, V., Prior, I. A., & Earnshaw, W. C. (2016) · Molecular Cell · doi:10.1016/j.molcel.2016.10.009 · Cited by 120 · see citing works
Hörmanseder, E., Simeone, A., Allen, G. E., Bradshaw, C. R., Figlmüller, M., Gurdon, J. B., & Jullien, J. (2017) · Cell stem cell · doi:10.1016/j.stem.2017.03.003 · Cited by 120 · see citing works
DNA sequence-dependent epigenetic inheritance of gene silencing and histone H3K9 methylation
Wang, X., & Moazed, D. (2017) · Science · doi:10.1126/science.aaj2114 · Cited by 117 · see citing works
Genome accessibility is widely preserved and locally modulated during mitosisPreprint
Hsiung, C., Morrissey, C. S., Udugama, M., Frank, C. L., Keller, C. A., Baek, S., Giardine, B., Crawford, G. E., Sung, M.-H., Hardison, R., et al. (2015) · Genome Research · doi:10.1101/gr.180646.114 · Cited by 114 · see citing works
A hyperactive transcriptional state marks genome reactivation at the mitosis–G1 transitionPreprint
Hsiung, C. C. ‐., Bartman, C., Huang, P., Ginart, P., Stonestrom, A. J., Keller, C. A., Face, C. J., Jahn, K. S., Evans, P., Sankaranarayanan, L., et al. (2016) · Genes & Development · doi:10.1101/gad.280859.116 · Cited by 105 · see citing works
Packaging the Genome: the Structure of Mitotic Chromosomes
Maeshima, K., & Eltsov, M. (2007) · The Journal of Biochemistry · doi:10.1093/jb/mvm214 · Cited by 104 · see citing works
The TBP–PP2A mitotic complex bookmarks genes by preventing condensin action
Xing, H., Vanderford, N. L., & Sarge, K. D. (2008) · Nature Cell Biology · doi:10.1038/ncb1790 · Cited by 102 · see citing works
A phospho/methyl switch at histone H3 regulates TFIID association with mitotic chromosomes
Varier, R. A., Outchkourov, N. S., de Graaf, P., van Schaik, F. M. A., Ensing, H. J. L., Wang, F., Higgins, J. M. G., Kops, G. J. P. L., & Timmers, H. T. M. (2010) · The EMBO Journal · doi:10.1038/emboj.2010.261 · Cited by 101 · see citing works
Landscape of monoallelic DNA accessibility in mouse embryonic stem cells and neural progenitor cells
Xu, J., Carter, A. C., Gendrel, A.-V., Attia, M., Loftus, J. R., Greenleaf, W. J., Tibshirani, R. J., Heard, É., & Chang, H. Y. (2017) · Nature Genetics · doi:10.1038/ng.3769 · Cited by 97 · see citing works
Zaidi, S. K., Young, D. W., Pockwinse, S. M., Javed, A., Lian, J. B., Stein, J. L., van Wijnen, A. J., & Stein, G. S. (2003) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2533076100 · Cited by 92 · see citing works
Lake, R. J., Tsai, P.-F., Choi, I., Won, K., & Fan, H.-Y. (2014) · PLoS Genetics · doi:10.1371/journal.pgen.1004204 · Cited by 91 · see citing works
Active Genes Are Sensitive to Deoxyribonuclease I During Metaphase
Gazit, B., Cedar, H., Lerer, I., & Voss, R. (1982) · Science · doi:10.1126/science.6283640 · Cited by 84 · see citing works
A Polycomb Group Protein Is Retained at Specific Sites on Chromatin in Mitosis
Follmer, N. E., Wani, A. H., & Francis, N. J. (2012) · PLoS Genetics · doi:10.1371/journal.pgen.1003135 · Cited by 79 · see citing works
Transcriptional Memory in the Drosophila Embryo
Ferraro, T., Esposito, E., Mancini, L., Ng, S., Lucas, T., Coppey, M., Dostatni, N., Walczak, A. M., Levine, M., & Lagha, M. (2015) · Current Biology · doi:10.1016/j.cub.2015.11.058 · Cited by 78 · see citing works
Dekker, J. (2014) · Epigenetics & Chromatin · doi:10.1186/1756-8935-7-25 · Cited by 72 · see citing works
Fonseca, J. P., Steffen, P. A., Müller, S., Lu, J. J.-Q., Sawicka, A., Seiser, C., & Ringrose, L. (2012) · Genes & Development · doi:10.1101/gad.184648.111 · Cited by 70 · see citing works
Genome-wide footprinting: ready for prime time?
Sung, M., Baek, S., & Hager, G. L. (2016) · Nature Methods · doi:10.1038/nmeth.3766 · Cited by 69 · see citing works
McManus, K. J., & Hendzel, M. J. (2006) · Biochemistry and Cell Biology · doi:10.1139/o06-086 · Cited by 68 · see citing works
Fairley, J. A., Scott, P. H., & White, R. J. (2003) · The EMBO Journal · doi:10.1093/emboj/cdg544 · Cited by 68 · see citing works
Grounds, M. D., & McGeachie, J. K. (1987) · Cell and Tissue Research · doi:10.1007/bf00218947 · Cited by 67 · see citing works
Yang, J., Sung, E., Donlin-Asp, P., & Corces, V. G. (2013) · Nature Communications · doi:10.1038/ncomms2469 · Cited by 65 · see citing works
Human mutations affect the epigenetic/bookmarking function of HNF1B
Lerner, J., Bagattin, A., Verdeguer, F., Makinistoglu, M. P., Garbay, S., Félix, T., Heidet, L., & Pontoglio, M. (2016) · Nucleic Acids Research · doi:10.1093/nar/gkw467 · Cited by 62 · see citing works
Levchenko, V., Jackson, B., & Jackson, V. E. (2005) · Biochemistry · doi:10.1021/bi047786o · Cited by 61 · see citing works
Repo-Man/PP1 regulates heterochromatin formation in interphase
de Castro, I. J., Budzak, J., Giacinto, M. L. D., Ligammari, L., Gokhan, E., Spanos, C., Moralli, D., Richardson, C. A., Heras, J. I. D. L., Salatino, S., et al. (2017) · Nature Communications · doi:10.1038/ncomms14048 · Cited by 61 · see citing works
Global mitotic phosphorylation of C2H2zinc finger protein linker peptides
Rizkallah, R., Alexander, K. E., & Hurt, M. M. (2011) · Cell Cycle · doi:10.4161/cc.10.19.17619 · Cited by 60 · see citing works
Temporal and Spatial Localization of Novel Nuclear Protein NP95 in Mitotic and Meiotic Cells.
Uemura, T., Kubo, E., Kanari, Y., Ikemura, T., Tatsumi, K., & Muto, M. (2000) · Cell Structure and Function · doi:10.1247/csf.25.149 · Cited by 59 · see citing works
Chromosome Dynamics during MitosisPreprint
Hirano, T. (2015) · Cold Spring Harbor Perspectives in Biology · doi:10.1101/cshperspect.a015792 · Cited by 59 · see citing works
Grandy, R. A., Whitfield, T. W., Wu, H., Fitzgerald, M. P., VanOudenhove, J., Zaidi, S. K., Montecino, M. A., Lian, J. B., van Wijnen, A. J., Stein, J. L., et al. (2015) · Molecular and Cellular Biology · doi:10.1128/mcb.00877-15 · Cited by 59 · see citing works
Mitosis Gives a Brief Window of Opportunity for a Change in Gene Transcription
Halley‐Stott, R. P., Jullien, J., Pasque, V., & Gurdon, J. B. (2014) · PLoS Biology · doi:10.1371/journal.pbio.1001914 · Cited by 54 · see citing works
Mitotic chromosome condensation in vertebrates
Vagnarelli, P. (2012) · Experimental Cell Research · doi:10.1016/j.yexcr.2012.03.017 · Cited by 51 · see citing works
Shin, J., Kim, T. W., Kim, H., Kim, H. J., Suh, M. Y., Lee, S., Lee, H., Kwak, S., Lee, S.-E., Lee, J., et al. (2016) · eLife · doi:10.7554/elife.10877 · Cited by 51 · see citing works
Different sensitivity of DNA in situ in interphase and metaphase chromatin to heat denaturation.
Darżynkiewicz, Z., Traganos, F., Sharpless, T., & Melamed, M. R. (1977) · The Journal of Cell Biology · doi:10.1083/jcb.73.1.128 · Cited by 47 · see citing works
Ali, S. A., Zaidi, S. K., Dobson, J. R., Shakoori, A. R., Lian, J. B., Stein, J. L., van Wijnen, A. J., & Stein, G. S. (2010) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1000620107 · Cited by 44 · see citing works
The Epigenetic Paradox of Pluripotent ES Cells
Festuccia, N., González, I., & Navarro, P. (2016) · Journal of Molecular Biology · doi:10.1016/j.jmb.2016.12.009 · Cited by 42 · see citing works
Self-citationInterphase and metaphase chromatin
Darżynkiewicz, Z., Traganos, F., Sharpless, T., & Melamed, M. R. (1977) · Experimental Cell Research · doi:10.1016/0014-4827(77)90286-5 · Cited by 41 · see citing works
Kooistra, S. M., Thummer, R. P., & Eggen, B. J. L. (2009) · Stem Cell Research · doi:10.1016/j.scr.2009.02.001 · Cited by 39 · see citing works
DNA Segments Sensitive to Single-Strand-Specific Nucleases Are Present in Chromatin of Mitotic Cells
Juan, G., Pan, W., & Darżynkiewicz, Z. (1996) · Experimental Cell Research · doi:10.1006/excr.1996.0267 · Cited by 36 · see citing works
Mitotic phosphorylation of CCCTC‐binding factor (CTCF) reduces its DNA binding activity
Sekiya, T., Murano, K., Kato, K., Kawaguchi, A., & Nagata, K. (2016) · FEBS Open Bio · doi:10.1002/2211-5463.12189 · Cited by 36 · see citing works
Promoter-Bound p300 Complexes Facilitate Post-Mitotic Transmission of Transcriptional Memory
Wong, M., Byun, J. S., Sacta, M. A., Jin, Q., Baek, S., & Gardner, K. L. (2014) · PLoS ONE · doi:10.1371/journal.pone.0099989 · Cited by 30 · see citing works
CHD4 Is a RanGTP-Dependent MAP that Stabilizes Microtubules and Regulates Bipolar Spindle Formation
Yokoyama, H., Νάκος, Κ., Santarella‐Mellwig, R., Rybina, S., Krijgsveld, J., Koffa, M. D., & Mattaj, I. W. (2013) · Current Biology · doi:10.1016/j.cub.2013.09.062 · Cited by 30 · see citing works
Foxl1 inhibits tumor invasion and predicts outcome in human renal cancer.
Yang, F., Yang, F., Li, W., Liu, M., Wang, G., Che, J., Huang, J., & Zheng, J. (2014) · Europe PMC (PubMed Central) · Cited by 29 · see citing works
Resetting a functional G1 nucleus after mitosis
de Castro, I. J., Gokhan, E., & Vagnarelli, P. (2016) · Chromosoma · doi:10.1007/s00412-015-0561-6 · Cited by 29 · see citing works
Qi, D., Wang, Q., Yu, M., Lan, R., Li, S., & Lu, F. (2016) · Cell Cycle · doi:10.1080/15384101.2016.1192729 · Cited by 28 · see citing works
Ohta, S., Wills, J. C., Sánchez‐Pulido, L., Alves, F. D. L., Wood, L., Chen, Z. A., Platani, M., Fischer, L., Hudson, D. F., Ponting, C. P., et al. (2010) · Cell · doi:10.1016/j.cell.2010.07.047 · Cited by 28 · see citing works
RING1A and BMI1 bookmark active genes via ubiquitination of chromatin-associated proteins
Arora, M., Packard, C. Z., Banerjee, T., & Parvin, J. D. (2015) · Nucleic Acids Research · doi:10.1093/nar/gkv1223 · Cited by 25 · see citing works
Live cell imaging of the cancer‐related transcription factor RUNX2 during mitotic progression
Pockwinse, S. M., Kota, K. P., Quaresma, A. J. C., Imbalzano, A. N., Lian, J. B., van Wijnen, A. J., Stein, J. L., Stein, G. S., & Nickerson, J. A. (2010) · Journal of Cellular Physiology · doi:10.1002/jcp.22465 · Cited by 21 · see citing works
Komura, J., Ikehata, H., & Ono, T. (2007) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0702363104 · Cited by 20 · see citing works
Shen, W., Wang, D., Ye, B., Shi, M., Zhang, Y., & Zhao, Z. (2015) · Biological Research · doi:10.1186/s40659-015-0019-6 · Cited by 19 · see citing works
Chromatin proteins and RNA are associated with DNA during all phases of mitosis
Black, K. L., Petruk, S., Fenstermaker, T. K., Hodgson, J. W., Caplan, J. L., Brock, H. W., & Mazo, A. (2016) · Cell Discovery · doi:10.1038/celldisc.2016.38 · Cited by 18 · see citing works
Choosing Cell Fate Through a Dynamic Cell Cycle
Chen, X., Hartman, A. A., & Guo, S. (2015) · Current Stem Cell Reports · doi:10.1007/s40778-015-0018-0 · Cited by 16 · see citing works
Changes in the organization of the genome during the mammalian cell cycle
Giorgetti, L., Servant, N., & Heard, É. (2013) · Genome biology · doi:10.1186/gb4147 · Cited by 12 · see citing works
Nishiyama, A., Dey, A., Tamura, T., Ko, M. S. H., & Ozato, K. (2012) · PLoS ONE · doi:10.1371/journal.pone.0034719 · Cited by 11 · see citing works
The elusive role of mitotic bookmarking in transcriptional regulation: Insights from Sox2
Deluz, C., Strebinger, D., Friman, E. T., & Suter, D. M. (2017) · Cell Cycle · doi:10.1080/15384101.2017.1288332 · Cited by 10 · see citing works
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- is dynamically regulated during the pluripotent cell cycle and stabilized upon differentiation. Mol. Cell. Biol. 36, 615-627. · DOI
Cited by
Sorted by citations
Advances in epigenetics link genetics to the environment and disease
Cavalli, G., & Heard, E. (2019) · Nature · doi:10.1038/s41586-019-1411-0 · Cited by 1,509 · see citing works
Modulation of cellular processes by histone and non-histone protein acetylation
Shvedunova, M., & Akhtar, A. (2022) · Nature Reviews Molecular Cell Biology · doi:10.1038/s41580-021-00441-y · Cited by 975 · see citing works
Mammalian SWI/SNF continuously restores local accessibility to chromatin
Iurlaro, M., Stadler, M. B., Masoni, F., Jagani, Z., Galli, G., & Schübeler, D. (2021) · Nature Genetics · doi:10.1038/s41588-020-00768-w · Cited by 165 · see citing works
Pichon, X., Lagha, M., Mueller, F., & Bertrand, E. (2018) · Molecules and Cells · doi:10.1016/j.molcel.2018.07.022 · Cited by 152 · see citing works
Poleshko, A. S., Smith, C. L., Nguyen, S. C., Sivaramakrishnan, P., Wong, K. G., Murray, J. I., Lakadamyali, M., Joyce, E. F., Jain, R., & Epstein, J. A. (2019) · eLife · doi:10.7554/elife.49278 · Cited by 138 · see citing works
A changing paradigm of transcriptional memory propagation through mitosis
Palozola, K. C., Lerner, J., & Zaret, K. S. (2018) · Nature Reviews Molecular Cell Biology · doi:10.1038/s41580-018-0077-z · Cited by 120 · see citing works
Modes of Interaction of KMT2 Histone H3 Lysine 4 Methyltransferase/COMPASS Complexes with Chromatin
Bochyńska, A., Lüscher‐Firzlaff, J., & Lüscher, B. (2018) · Cells · doi:10.3390/cells7030017 · Cited by 104 · see citing works
Transcription factor activity and nucleosome organization in mitosisPreprint
Festuccia, N., Owens, N. D. L., Papadopoulou, T., González, I., Tachtsidi, A., Vandormael‐Pournin, S., Gallego, E., Gutierrez, N., Dubois, A., Cohen‐Tannoudji, M., et al. (2019) · Genome Research · doi:10.1101/gr.243048.118 · Cited by 93 · see citing works
Self-citationCTCF confers local nucleosome resiliency after DNA replication and during mitosis
Owens, N. D. L., Papadopoulou, T., Festuccia, N., Tachtsidi, A., González, I., Dubois, A., Vandormael‐Pournin, S., Nora, E. P., Bruneau, B. G., Cohen‐Tannoudji, M., et al. (2019) · eLife · doi:10.7554/elife.47898 · Cited by 79 · see citing works
Self-citationTranscription factors: building hubs in the 3D space
Giammartino, D. C. D., Polyzos, A., & Apostolou, E. (2020) · Cell Cycle · doi:10.1080/15384101.2020.1805238 · Cited by 66 · see citing works
Mitotic bookmarking by SWI/SNF subunits
Zhu, Z., Chen, X., Guo, A., Manzano, T. I., Walsh, P. J., Wills, K. M., Halliburton, R. L., Radko-Juettner, S., Carter, R. D., Partridge, J. F., et al. (2023) · Nature · doi:10.1038/s41586-023-06085-6 · Cited by 67 · see citing works
Nucleosome Positioning and Spacing: From Mechanism to Function
Singh, A. K., & Mueller‐Planitz, F. (2021) · Journal of Molecular Biology · doi:10.1016/j.jmb.2021.166847 · Cited by 54 · see citing works
The control of transcriptional memory by stable mitotic bookmarking
Bellec, M., Dufourt, J., Hunt, G., Hasse, H. L., Trullo, A., Aabidine, A. Z. E., Lamarque, M., Gaskill, M. M., Faure-Gautron, H., Mannervik, M., et al. (2022) · Nature Communications · doi:10.1038/s41467-022-28855-y · Cited by 53 · see citing works
Madrigal, P., Deng, S., Feng, Y., Militi, S., Goh, K. J., Nibhani, R., Grandy, R. A., Osnato, A., Ortmann, D., Brown, S. E., et al. (2023) · Nature Communications · doi:10.1038/s41467-023-36116-9 · Cited by 51 · see citing works
Dynamic 3D Chromatin Reorganization during Establishment and Maintenance of Pluripotency
Pelham‐Webb, B., Murphy, D., & Apostolou, E. (2020) · Stem Cell Reports · doi:10.1016/j.stemcr.2020.10.012 · Cited by 43 · see citing works
Differential cell-cycle control by oscillatory versus sustained Hes1 expression via p21
Maeda, Y., Isomura, A., Masaki, T., & Kageyama, R. (2023) · Cell Reports · doi:10.1016/j.celrep.2023.112520 · Cited by 39 · see citing works
Epigenetic memory of cell fate commitment
Elsherbiny, A., & Dobreva, G. D. (2021) · Current Opinion in Cell Biology · doi:10.1016/j.ceb.2020.12.014 · Cited by 39 · see citing works
Chromatin accessibility and transcription factor binding through the perspective of mitosis
Coux, R.-X., Owens, N. D. L., & Navarro, P. (2020) · Transcription · doi:10.1080/21541264.2020.1825907 · Cited by 35 · see citing works
Self-citationThe molecular basis of cell memory in mammals: The epigenetic cycle
Espinosa-Martínez, M., Alcázar‐Fabra, M., & Landeira, D. (2024) · Science Advances · doi:10.1126/sciadv.adl3188 · Cited by 33 · see citing works
Mitotic memories of gene activity
González, I., Molliex, A., & Navarro, P. (2021) · Current Opinion in Cell Biology · doi:10.1016/j.ceb.2020.12.009 · Cited by 33 · see citing works
Self-citationMitotic bookmarking redundancy by nuclear receptors in pluripotent cells
Chervova, A. A., Molliex, A., Baymaz, H. I., Coux, R.-X., Papadopoulou, T., Mueller, F., Hercul, E., Fournier, D., Dubois, A., Gaïani, N., et al. (2024) · Nature Structural & Molecular Biology · doi:10.1038/s41594-023-01195-1 · Cited by 31 · see citing works
Self-citationÁlvarez, V., Bandau, S., Jiang, H., Rios-Szwed, D. O., Hukelmann, J. L., Garcia-Wilson, E., Wiechens, N., Griesser, E., ten Have, S., Owen‐Hughes, T., et al. (2023) · Cell Reports · doi:10.1016/j.celrep.2023.111996 · Cited by 27 · see citing works
Mitotic Gene Bookmarking: An Epigenetic Program to Maintain Normal and Cancer Phenotypes
Zaidi, S. K., Nickerson, J. A., Imbalzano, A. N., Lian, J. B., Stein, J. L., & Stein, G. S. (2018) · Molecular Cancer Research · doi:10.1158/1541-7786.mcr-18-0415 · Cited by 28 · see citing works
Interactions With Histone H3 & Tools to Study Them
Scott, W. A., & Campos, E. I. (2020) · Frontiers in Cell and Developmental Biology · doi:10.3389/fcell.2020.00701 · Cited by 28 · see citing works
Jirawatnotai, S., Dalton, S., & Wattanapanitch, M. (2020) · Seminars in Cell and Developmental Biology · doi:10.1016/j.semcdb.2020.05.001 · Cited by 27 · see citing works
A gene subset requires CTCF bookmarking during the fast post‐mitotic reactivation of mouse ES cells
Chervova, A. A., Festuccia, N., Altamirano‐Pacheco, L., Dubois, A., & Navarro, P. (2022) · EMBO Reports · doi:10.15252/embr.202256075 · Cited by 27 · see citing works
Self-citationNevil, M., Gibson, T. J., Bartolutti, C., Iyengar, A., & Harrison, M. M. (2020) · Development · doi:10.1242/dev.185009 · Cited by 24 · see citing works
Dynamics and regulation of mitotic chromatin accessibility bookmarking at single-cell resolution
Yu, Q., Liu, X., Fang, J., Wu, H., Guo, C., Zhang, W., Liu, N., Jiang, C., Sha, Q., Yuan, X. N., et al. (2023) · Science Advances · doi:10.1126/sciadv.add2175 · Cited by 24 · see citing works
Soares, M. A. F., Soares, D. S., Teixeira, V., Heskol, A., Bressan, R. B., Pollard, S. M., Oliveira, R. A., & Castro, D. S. (2021) · Genes & Development · doi:10.1101/gad.348174.120 · Cited by 24 · see citing works
Transcriptional repression across mitosis: mechanisms and functions
Contreras, A., & Perea-Resa, C. (2024) · Biochemical Society Transactions · doi:10.1042/bst20231071 · Cited by 23 · see citing works
Remembering the past: Mitotic bookmarking in a developing embryo
Bellec, M., Radulescu, O., & Lagha, M. (2018) · Current Opinion in Systems Biology · doi:10.1016/j.coisb.2018.08.003 · Cited by 23 · see citing works
GATA2 mitotic bookmarking is required for definitive haematopoiesis
Silvério-Alves, R., Kurochkin, I., Rydström, A., Echegaray, C. V., Haider, J., Nicholls, M., Rode, C., Thelaus, L., Lindgren, A. Y., Ferreira, A. G., et al. (2023) · Nature Communications · doi:10.1038/s41467-023-40391-x · Cited by 22 · see citing works
Huang, Y., Gao, B., Meng, Q., Yang, L.-Z., Ma, X.-K., Wu, H., Pan, Y.-H., Li, Y., Li, D., & Chen, L. (2023) · Genome biology · doi:10.1186/s13059-023-02848-6 · Cited by 21 · see citing works
Dreval, K., Lake, R. J., & Fan, H.-Y. (2019) · Nucleic Acids Research · doi:10.1093/nar/gkz178 · Cited by 21 · see citing works
Pavlaki, I., Docquier, F., Chernukhin, I. V., Kita, G.-X., Gretton, S., Clarkson, C. T., Teif, V. B., & Klenova, E. M. (2018) · Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms · doi:10.1016/j.bbagrm.2018.06.010 · Cited by 21 · see citing works
Weinhouse, C. (2021) · Free Radical Biology and Medicine · doi:10.1016/j.freeradbiomed.2021.03.018 · Cited by 19 · see citing works
Linking cell cycle to hematopoietic stem cell fate decisions
Treichel, S., & Filippi, M. (2023) · Frontiers in Cell and Developmental Biology · doi:10.3389/fcell.2023.1231735 · Cited by 19 · see citing works
Laner‐Plamberger, S., Oeller, M., Mrazek, C., Hartl, A. J., Sonderegger, A., Rohde, E., Strunk, D., & Schallmoser, K. (2019) · Journal of Translational Medicine · doi:10.1186/s12967-019-02183-0 · Cited by 16 · see citing works
Rose, J. T., Moskovitz, E., Boyd, J. R., Gordon, J. A. R., Bouffard, N. A., Fritz, A. J., Illendula, A., Bushweller, J. H., Lian, J. B., Stein, J. L., et al. (2020) · Oncotarget · doi:10.18632/oncotarget.27637 · Cited by 18 · see citing works
Role of epigenetics in cellular reprogramming; from iPSCs to disease modeling and cell therapy
Li, Y., & Darabi, R. (2022) · Journal of Cellular Biochemistry · doi:10.1002/jcb.30164 · Cited by 16 · see citing works
The shifting shape and functional specializations of the cell cycle during lineage development
Hwang, Y., Hidalgo, D., & Socolovsky, M. (2020) · WIREs Mechanisms of Disease · doi:10.1002/wsbm.1504 · Cited by 15 · see citing works
Chromatin Landscaping At Mitotic Exit Orchestrates Genome Function
Shoaib, M., Nair, N., & Sørensen, C. S. (2020) · Frontiers in Genetics · doi:10.3389/fgene.2020.00103 · Cited by 14 · see citing works
Rizvi, S., Chhabra, A., Tripathi, A., & Tyagi, R. K. (2023) · Molecular and Cellular Endocrinology · doi:10.1016/j.mce.2023.112069 · Cited by 13 · see citing works
Yang, S., Zhao, N., Yang, Y., Hu, Y., Dong, H., & Zhao, R. (2018) · Journal of Agricultural and Food Chemistry · doi:10.1021/acs.jafc.7b05418 · Cited by 13 · see citing works
Kori, S., Jimenji, T., Ekimoto, T., Sato, M., Kusano, F., Oda, T., Unoki, M., Ikeguchi, M., & Arita, K. (2020) · Journal of Molecular Biology · doi:10.1016/j.jmb.2020.05.006 · Cited by 13 · see citing works
Regulation of transcription reactivation dynamics exiting mitosis
Sarnataro, S., Riba, A., & Molina, N. (2021) · PLoS Computational Biology · doi:10.1371/journal.pcbi.1009354 · Cited by 12 · see citing works
Shen, Y., Liu, K., Liu, J., Shen, J., Ye, T., Zhao, R., Zhang, R., & Song, Y. (2024) · Molecular Cell · doi:10.1016/j.molcel.2024.11.019 · Cited by 12 · see citing works
Changes in PRC1 activity during interphase modulate lineage transition in pluripotent cells
Asenjo, H. G., Alcázar‐Fabra, M., Espinosa-Martínez, M., López-Onieva, L., Gallardo, A., Dimitrova, E., Feldmann, A., Pachano, T., Martorell‐Marugán, J., Carmona‐Sáez, P., et al. (2023) · Nature Communications · doi:10.1038/s41467-023-35859-9 · Cited by 8 · see citing works
Chervova, A. A., Molliex, A., Baymaz, H. I., Papadopoulou, T., Mueller, F., Hercul, E., Fournier, D., Dubois, A., Gaïani, N., Beli, P., et al. (2022) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2022.11.28.518105 · Cited by 8 · see citing works
Self-citationThe secret life of chromatin tethers
Kiseleva, A. A., & Poleshko, A. S. (2023) · FEBS Letters · doi:10.1002/1873-3468.14685 · Cited by 7 · see citing works
Barozzi, I., Slaven, N., Canale, E., Lopes, R., Barbosa, I. A. M., Bleu, M., Ivanoiu, D., Pacini, C., Mensa’, E., Chambers, A., et al. (2024) · Cancer Discovery · doi:10.1158/2159-8290.cd-23-1157 · Cited by 7 · see citing works
OCT4 expression in human embryonic stem cells: spatio-temporal dynamics and fate transitions
Wadkin, L. E., Orozco-Fuentes, S., Neganova, I. E., Lako, M., Barrio, R. A., Baggaley, A. W., Parker, N. G., & Shukurov, A. (2020) · Physical Biology · doi:10.1088/1478-3975/abd22b · Cited by 7 · see citing works
Function and regulation of transcription factors during mitosis-to-G1 transition
Soares, M. A. F., Oliveira, R. A., & Castro, D. S. (2022) · Open Biology · doi:10.1098/rsob.220062 · Cited by 6 · see citing works
Dynamic redistribution and inheritance of chromatin:RNA interactions during cell division
Sparago, E., Watanabe, R., Sharp, J. A., & Blower, M. D. (2023) · Frontiers in RNA Research · doi:10.3389/frnar.2023.1240954 · Cited by 5 · see citing works
Bouguechtouli, C., Ghouil, R., Alik, A., Dingli, F., Loew, D., & Theillet, F. (2024) · Comptes Rendus Chimie · doi:10.5802/crchim.272 · Cited by 5 · see citing works
OLIG2 is an in vivo bookmarking transcription factor in the developing neural tube in mouse
Hayashi, S., Oe, S., Koike, T., Seki, R., Nakano, Y., Hirahara, Y., Tanaka, S., Ito, T., Yasukochi, Y., Higasa, K., et al. (2022) · Journal of Neurochemistry · doi:10.1111/jnc.15746 · Cited by 4 · see citing works
Ocular disease-associated mutations diminish the mitotic chromosome retention ability of PAX6
Lan, H.-C., Du, T.-H., Yao, Y.-L., & Yang, W. (2021) · Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms · doi:10.1016/j.bbagrm.2021.194751 · Cited by 4 · see citing works
FAIRE‐MS reveals mitotic retention of transcriptional regulators on a proteome‐wide scale
Ye, B., Shen, W., Li, Y., Wang, D., Zhang, Y., Li, P., Yin, M., Wang, Y., Xie, D., Shi, S., et al. (2022) · The FASEB Journal · doi:10.1096/fj.202201038rrr · Cited by 4 · see citing works
Taguchi, Y., & Turki, T. (2021) · PLoS ONE · doi:10.1371/journal.pone.0251032 · Cited by 4 · see citing works
Hayashi, S.-I., Seki-Omura, R., Yamada, S., Kamata, T., Sato, Y., Oe, S., Koike, T., Nakano, Y., Iwashita, H., Hirahara, Y., et al. (2023) · Gene · doi:10.1016/j.gene.2023.147829 · Cited by 1 · see citing works
Mitotic bookmarking by transcription factors and the preservation of pluripotency
Owens, N. D. L., González, I., Artus, J., & Navarro, P. (2020) · Elsevier eBooks · doi:10.1016/b978-0-12-814085-7.00006-4 · Cited by 3 · see citing works
Self-citationMaintaining transcriptional homeostasis during cell cycle
Ramos-Alonso, L., & Chymkowitch, P. (2023) · Transcription · doi:10.1080/21541264.2023.2246868 · Cited by 3 · see citing works
Cappelli, C., Sepúlveda, H., Rivas, S., Pola-Véliz, V., Urzúa, U., Donoso, G., Sagredo, E. A., Carrero, D., Casanova-Ortiz, E., Sagredo, A. I., et al. (2020) · Journal of Molecular Biology · doi:10.1016/j.jmb.2020.03.013 · Cited by 3 · see citing works
Transcription factor activity and nucleosome organisation in mitosisPreprint
Festuccia, N., Owens, N. D. L., Papadopoulou, T., González, I., Tachtsidi, A., Vandormael‐Pournin, S., Gallego, E., Gutierrez, N., Dubois, A., Cohen‐Tannoudji, M., et al. (2018) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/392241 · Cited by 3 · see citing works
Self-citationSlaven, N., Lopes, R., Canale, E., Ivanoiu, D., Pacini, C., Barbosa, I. A. M., Bleu, M., Bravaccini, S., Ravaioli, S., Dieci, M. V., et al. (2022) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2022.02.15.480537 · Cited by 3 · see citing works
MYC and MAX drive the reactivation of the genome after mitosisPreprint
González, I., Chervova, A. A., Escoll, P., Altamirano‐Pacheco, L., Mueller, F., Dubois, A., & Navarro, P. (2023) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2023.08.13.553120 · Cited by 3 · see citing works
Self-citationBar-Cohen, S., Quiles, M. L. M., Baskin, A., Dawud, R., Jennings, B. H., & Paroush, Z. (2023) · Development · doi:10.1242/dev.201041 · Cited by 2 · see citing works
Chromosomal localization of PHOX2B during M‐phase is disrupted in disease‐associated mutants
Sato, Y., Hayashi, S., Oe, S., Koike, T., Nakano, Y., Seki, R., Iwashita, H., Hirahara, Y., & Kitada, M. (2025) · Development Growth & Differentiation · doi:10.1111/dgd.70001 · Cited by 2 · see citing works
Periodicity in the embryo: Emergence of order in space, diffusion of order in time
Alicea, B., Parent, J., & Singh, U. (2021) · Biosystems · doi:10.1016/j.biosystems.2021.104405 · Cited by 2 · see citing works
Mitotic bookmarking provides epigenetic persistence or plasticity for biological control and cancer
Fritz, A. J., Pacht, E., Toor, R. H., Warren, J. S. A., Greenyer, H. W., Porto, J. R. D., Person, A. G., Korzec, S. J., Zotkin, G., Heath, J. L., et al. (2025) · Biochemistry and Cell Biology · doi:10.1139/bcb-2025-0047 · Cited by 1 · see citing works
A mitotic bookmark coordinates transcription and replication in Drosophila embryos
Cho, C.-Y., & O’Farrell, P. H. (2025) · Nucleic Acids Research · doi:10.1093/nar/gkaf1429 · Cited by 1 · see citing works
Inhibitors targeting epigenetic modifications in cancer
Baghel, V. S., Shinde, S., Sinha, V., Dixit, V., Tiwari, A. K., Saxena, S., Vishvakarma, N. K., Shukla, D., & Bhatt, P. (2023) · Elsevier eBooks · doi:10.1016/b978-0-323-99521-4.00007-6 · Cited by 1 · see citing works
Chervova, A. A., Festuccia, N., Dubois, A., & Navarro, P. (2022) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2022.02.20.481195 · Cited by 1 · see citing works
Self-citationMagnani, L. (2022) · Research Square · doi:10.21203/rs.3.rs-1432636/v1 · Cited by 1 · see citing works
CRISPR-dCas13-tracing reveals transcriptional memory and limited mRNP export in developing embryosPreprint
Huang, Y., Gao, B., Meng, Q., Yang, L.-Z., Ma, X.-K., Wu, H., Pan, Y.-H., Yang, L. C., Li, D., & Chen, L. (2022) · Research Square · doi:10.21203/rs.3.rs-1716200/v1 · Cited by 1 · see citing works
Thumbikat, P., Pattabiraman, G., Sharifzad, F., Yang, Y., Liu, Z. Q., Osborn, C. V., Murphy, S. F., Cao, Q., & Schaeffer, A. J. (2026) · medRxiv · doi:10.64898/2026.01.14.26344138 · Cited by 1 · see citing works
Rose, J. T., Moskovitz, E., Boyd, J. R., Gordon, J. A. R., Bouffard, N. A., Fritz, A. J., Illendula, A., Bushweller, J. H., Lian, J. B., Stein, J. L., et al. (2019) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/511410
Hill, S. L., Rogan, P. K., Wang, Y. X., & Knoll, J. H. M. (2021) · Molecular Cytogenetics · doi:10.1186/s13039-021-00567-w
Cell cycle progression requires repression by Groucho during S-phase and its relief at G2-phasePreprint
Bar-Cohen, S., & Paroush, Z. (2022) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2022.02.22.481413
Asenjo, H. G., Alcázar‐Fabra, M., Espinosa-Martínez, M., López-Onieva, L., Gallardo, A., Dimitrova, E., Feldmann, A., Pachano, T., Martorell‐Marugán, J., Carmona‐Sáez, P., et al. (2022) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2022.07.26.501502
Epigenetic Regulation of Chromatin during Mitosis in Embryos
Mukherjee, S. (2021) · Journal of Embryology & Stem Cell Research · doi:10.23880/jes-16000153
Huang, Y., Gao, B., Meng, Q., Yang, L.-Z., Ma, X.-K., Wu, H., Pan, Y.-H., Yang, L. C., Li, D., & Chen, L. (2023) · Figshare · doi:10.6084/m9.figshare.22605973
Huang, Y., Gao, B., Meng, Q., Yang, L.-Z., Ma, X.-K., Wu, H., Pan, Y.-H., Yang, L. C., Li, D., & Chen, L. (2023) · Figshare · doi:10.6084/m9.figshare.22605979
Huang, Y., Gao, B., Meng, Q., Yang, L.-Z., Ma, X.-K., Wu, H., Pan, Y.-H., Yang, L. C., Li, D., & Chen, L. (2023) · Figshare · doi:10.6084/m9.figshare.22605970
Huang, Y., Gao, B., Meng, Q., Yang, L.-Z., Ma, X.-K., Wu, H., Pan, Y.-H., Yang, L. C., Li, D., & Chen, L. (2023) · Figshare · doi:10.6084/m9.figshare.22605976
Huang, Y., Gao, B., Meng, Q., Yang, L.-Z., Ma, X.-K., Wu, H., Pan, Y.-H., Yang, L. C., Li, D., & Chen, L. (2023) · Figshare · doi:10.6084/m9.figshare.22605967
Zakarya, R. (2025) · Current Issues in Molecular Biology · doi:10.3390/cimb47050323
Huang, Y., Gao, B.-Q., Meng, Q., Yang, L.-Z., Ma, X.-K., Wu, H., Pan, Y.-H., Yang, L., Li, D., & Chen, L.-L. (2023) · Figshare · doi:10.6084/m9.figshare.22605988
Huang, Y., Gao, B.-Q., Meng, Q., Yang, L.-Z., Ma, X.-K., Wu, H., Pan, Y.-H., Yang, L., Li, D., & Chen, L.-L. (2023) · Figshare · doi:10.6084/m9.figshare.22605964
Huang, Y., Gao, B.-Q., Meng, Q., Yang, L.-Z., Ma, X.-K., Wu, H., Pan, Y.-H., Yang, L., Li, D., & Chen, L.-L. (2023) · Figshare · doi:10.6084/m9.figshare.22605985
Mitotic Bookmarking and Chromosomal Coating by Nuclear Receptors: Segregating Myth & Reality
Rizvi, S., & Tyagi, R. K. (2026) · Cell Biology International · doi:10.1002/cbin.70155
Tachtsidi, A. (2018) · theses.fr (ABES) · doi:10.70675/2ef58956zd619z4f59z94dbz6262d6448ed1
Epigenetic Regulation of Immune Dysfunction in Chronic Prostatitis/Chronic Pelvic Pain Syndrome
Thumbikat, P., Pattabiraman, G., Sharifzad, F., Yang, Y., Liu, Z., Osborn, C. V., Murphy, S. F., Cao, Q., & Schaeffer, A. J. (2026) · The Prostate · doi:10.1002/pros.70191
Early fate diversification of radial glial progenitors during corticogenesis
Varela-Martínez, I., Villalba, A., García‐Marqués, J., Aguilera, A., Castro, D. S., Hippenmeyer, S., & Nieto, M. (2026) · Science Advances · doi:10.1126/sciadv.adw5487
Kumari, A., Varde, O., Gopi, V., Rajakumara, E., Nambiar, M., & Mehta, G. (2026) · Journal of Molecular Biology · doi:10.1016/j.jmb.2026.169992
Contreras-Pérez, A., Espinosa, H., Sayago, E. I., Basu, A., Emili, A., Blower, M. D., & Perea-Resa, C. (2026) · Molecular Cell · doi:10.1016/j.molcel.2026.08.021
- Authors
- Festuccia, N., Gonzalez, I., Owens, N., & Navarro, P.
- Affiliations
- Centre National de la Recherche Scientifique (FR)
- Institut Pasteur, CNRS UMR3738 Epigenetics of Stem Cells, Department of Developmental and Stem Cell Biology , , 25 rue du Docteur Roux, 75015 Paris , France
- Corresponding author
- Navarro, Pablo
- Venue
- Development
- Publisher
- The Company of Biologists
- Published
- 2017-10-15
- Volume
- 144
- Issue
- 20
- Pages
- 3633-3645
- ISSN
- 0950-1991 (ISSN-L)
- 1477-9129
- OpenAlex
- W2765611282
- Cited by
- 93
- References
- 127
- Citations by year
- 2026: 6 · 2025: 4 · 2024: 6 · 2023: 21 · 2022: 13 · 2021: 14 · 2020: 13 · 2019: 7 · 2018: 9
- FWCI
- 0.74
- Type
- journal article
- Language
- en
- Open access
- hybrid
- doi.org
- Licence
- Locations
- Development (publishedVersion, other-oa)
- PubMed (publishedVersion)
- HAL (submittedVersion, other-oa)
- HighWire Press Open Archive (submittedVersion)
- Funders
- Institut Pasteur
- Centre National de la Recherche Scientifique (ANR-16-CE12-0004)
- Agence Nationale de la Recherche (ANR-10-LABX-73)
- Fondation ARC pour la Recherche sur le Cancer (PJA20161204705)
- Fondation Schlumberger pour l'Education et la Recherche (FSER-2016)
- European Molecular Biology Organization (ALTF 876-2013)
- Marie-Curie Actions (626705)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics and Chromatin Dynamics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Developmental Biology and Gene Regulation
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Epigenetics and DNA Methylation
- Keywords
- mitotic bookmarking, transcription factors, chromatin modifiers, epigenetic regulation, stem cells, cell fate transitions, cell proliferation
- MeSH terms
- Animals, Cell Cycle, Cell Differentiation, Cell Nucleus, Chromatin, Gene Expression Regulation, Humans, Mitosis, Stem Cells, Transcription Factors, Gene Expression Regulation, Developmental, Cell Lineage, Epigenesis, Genetic, Mice
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