Single cell transcriptomics reveals spatial and temporal dynamics of gene expression in the developing mouse spinal cord

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4. Spatial transcriptomics and single-nucleus RNA sequencing reveal a transcriptomic atlas of adult human spinal cord
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6. Spinal V1 inhibitory interneuron clades differ in birthdate, projections to motoneurons, and heterogeneity
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7. A single-cell atlas of spatial and temporal gene expression in the mouse cranial neural plate
   Eric Brooks, Andrew R Moorman, Bhaswati Bhattacharya, Ian S Prudhomme, Max Land, Heather L. Alcorn, Roshan Sharma, Dana Pe’er, Jennifer A. Zallen · 2025 · eLife
8. Dual PAX3/7 transcriptional activities spatially encode spinal cell fates through distinct gene networks
   Robin Rondon, Théaud Hezez, Julien Richard Albert, Bernadette Drayton‐Libotte, Gloria González Curto, Frédéric Relaix, Claire Dugast‐Darzacq, Pascale Gilardi‐Hebenstreit, Vanessa Ribes · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
9. Tumor Microenvironment in Ovarian Cancer through Spatial Transcriptomics and Identification of Key Gene Expression Profiles
   Kevser Kübra Kırboğa, Ecir Uğur Küçüksille, Mithun Rudrapal, Emre Aktaş, Raghu Ram Achar, Gouri Deshpande, Victor Aleksandrovich Stupin, Ekaterina Vladimirovna Silina · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
10. A single cell ATAC-seq atlas uncovers dynamic changes in chromatin accessibility during cell fate specification at the neural plate border
    Eva Hamrud, Jacob Leese, Alexandre P Thiery, Ailin Leticia Buzzi, Alessandra Vigilante, James Briscoe, Andrea Streit · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
11. Dynamic Functional Pathway Development in Type 1 Spinal Interneurons: Stage-specific roles of retinoic acid activity
    Dina Rekler, Sarah A. Kagan, Noa Rachel Krutous, Susanna Ventriglia, Gilgi Friedlander, Chaya Kalcheim · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
12. Lineage origin of spinal cord cell type diversity
    Sophie Gobeil, Francisco Da Silveira Neto, Giulia Silvestrelli, Matthijs Smits, Carmen Streicher, Giselle Cheung, Simon Hippenmeyer, Lora B. Sweeney · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
13. A dynamic and spatially periodic micro-pattern of HES5 expression underlies the probability of neuronal differentiation in the mouse spinal cord
    Veronica Biga, Joshua Hawley, Emma Johns, Daniel Han, Jochen Kursawe, Paul Glendinning, Cerys S Manning, Nancy Papalopulu · 2020 · Research Explorer (The University of Manchester)
14. Timing of neurogenesis through sequential accumulation of miR-9 due to additive expression of multiple alleles
    Ximena Soto, Joshua Burton, Cerys S Manning, Thomas George Minchington, R. Lea, J. Lee, Jochen Kursawe, Magnus Rattray, Nancy Papalopulu · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
15. Characterization of a novel Lbx1 mouse loss of function strain
    Lyvianne Decourtye, Jeremy A. McCallum-Loudeac, Sylvia Zellhuber-McMillan, Emma Young, Kathleen J. Sircombe, Megan J. Wilson · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
16. Barreras y facilitadores de la gestión del dolor posoperatorio en la enfermería iraní:: un estudio de investigación cualitativo
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17. Regulação pré- e pós-transcricional do gene Scratch2 durante a neurogênese no tubo neural posterior.
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18. Efeito dos fatores de transcrição NEUROD4 e SCRATCH2 no controle da proliferação, migração e transcrição em progenitores neurais embrionários.
    Shirley Mirna de La Cruz Anticona · 2021
19. Single cell RNA-seq analysis of spinal locomotor circuitry in larval zebrafish
    Jimmy J. Kelly, Hua Wen, Paul Brehm · 2023 · eLife
20. A spinal synergy of excitatory and inhibitory neurons coordinates ipsilateral body movements
    Marito Hayashi, Miriam Gullo, Gokhan Senturk, Stefania Di Costanzo, Shinji C. Nagasaki, Ryoichiro Kageyama, Itaru Imayoshi, Martyn Goulding, Samuel L. Pfaff, Graziana Gatto · 2023
21. Single cell RNA-seq analysis of spinal locomotor circuitry in larval zebrafish
    Jimmy J. Kelly, Hua Wen, Paul Brehm · 2023 · eLife
22. Regulação pré- e pós-transcricional do gene Scratch2 durante a neurogênese no tubo neural posterior.
    Carolina Purcell Goes · 2019
23. PCL-seq: enhanced high-resolution transcriptomic profiling of region of interest in fresh frozen and FFPE tissues
    Xue Dong, Xiaonan Cui, Mengzhu Hu, Wenjian Zhou, Weiyang Shi · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
24. Homeodomain Involvement in Nuclear HOX Protein Homo- and Heterodimerization
    Damien Marchese, Laetitia Evrard, Isabelle Bergiers, Ludovic Boas, Justine Duphénieux, Maryse Hermant, Tamara Pringels, Fisnik Zeqiri, Marc Pirson, Jean‐Claude Twizere et al. · 2025 · International Journal of Molecular Sciences
25. Oscillatory Co-expression of HES1 and HES5 Enables a Hybrid State in a Bistable Transcription Factor Regulatory Motif
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26. Evidence for chronological diversification of spinal neuron subtypes by a shared sequence of transcription factors
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27. Spatial joint profiling of DNA methylome and transcriptome in mammalian tissues
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28. A modular enhancer mediates SCRT2 repression of ISLET1 in the spinal cord
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29. The neuronal fate determinants SOX4/11 control mitotic fidelity of adult hippocampal precursor cells
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30. Diverse Transcriptional Alterations in V2a Propriospinal Neurons Following Spinal Cord Injury
    Christina Thapa, Ian Thomas Walling, Praneet Chaturvedi, Sarah Baumgartner, Matthew Fleming, Jacek Biesiada, Nathan Salomonis, Steven A. Crone · 2025 · Journal of Neuroscience
31. A dual genetic constraint underlies the conservation of early brains in vertebrates
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32. Stem cell-based approach to identify regulatory TFs during mammalian cell differentiation
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33. Temporal control of axonal floor plate crossing through a combination of incoherent feedforward and feedback loops of gene regulatory network regulating Robo3 expression
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34. Capturing gene–cell duality in a cat’s cradle
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35. Independent control of neurogenesis and dorsoventral patterning by NKX2-2
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36. Single-cell differential abundance detection: A new angle on dissecting tumor heterogeneity
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37. Entropy Sorting Feature Selection: information-theoretic gene set identification improves single-cell RNA sequencing data interpretability
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38. The Regenerative Stage‐Defined Neurogenic Properties in the Spinal Cord of Xenopus laevis : Correlation Between Neurogenic Potential and Functional Repair of the Spinal Cord
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39. Development of the spinocerebellar system within the precerebellar network
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40. Comparative analyses of regional and temporal transcriptomics of early human and mouse central nervous systems
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41. Distinct signaling center and progenitor identity dynamics initiate human forebrain patterning
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42. Molecular mechanisms orchestrating commissural axon guidance
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43. Fonction d'un régulateur du cycle cellulaire, la phosphatase CDC25B, au cours de la neurogenèse chez les Mammifères
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44. Douleurs chroniques : implication et potentiel thérapeutique des membres de la famille FXYD
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45. Étude des bases moléculaires et cellulaires de la vulnérabilité des neurones moteurs dans l'amyotrophie spinale distale des membres inférieurs
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46. Deciphering the nature and mode of action of the mechanisms involved in temporal patterning in Drosophila wing disc epithelial progenitors
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47. Maturation of spinal motor control through developmental changes in ion currents
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48. Developing mouse inhibitory neuron single-cell transcriptomes reveal distinct modes of cell-type diversification
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49. Molecular address codes delineate circuit-specific motor neuron-muscle matchmaking in the developing tetrapod limb
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50. Transcriptomic analysis of spinal V1 interneurons informs their multifunctional role in motor output
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51. PTPσ mediates the integration of grafted neuronal tissueoids with host neural pathways after complete spinal cord injury
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52. Loss of Sall3 eliminates presynaptic inhibition of sensory motor circuits and impairs adaptive motor behavior
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