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Analysis of GTPase-activating proteins: Rab1 and Rab43 are key Rabs required to maintain a functional Golgi complex in human cells
Abstract
Rab GTPases control vesicle movement and tethering membrane events in membrane trafficking. We used the 38 human Rab GTPase activating proteins (GAPs) to identify which of the 60 Rabs encoded in the human genome function at the Golgi complex. Surprisingly, this screen identified only two GAPs, RN-tre and TBC1D20, disrupting both Golgi organization and protein transport. RN-tre is the GAP for Rab43, and controls retrograde transport into the Golgi from the endocytic pathway. TBC1D20 is the ER-localized GAP for Rab1, and is the only GAP blocking the delivery of secretory cargo from the ER to the cell surface. Strikingly, its expression causes the loss of the Golgi complex, highlighting the importance of Rab1 for Golgi biogenesis. These effects can be antagonized by reticulon, a binding partner for TBC1D20 in the ER. Together, these findings indicate that Rab1 and Rab43 are key Rabs required for the biogenesis and maintenance of a functional Golgi structure, and suggest that other Rabs acting at the Golgi complex are likely to be functionally redundant.
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“Loss of RAB1A/B impaired secretion (Fig. 6d,e), serving as a positive control3637.”
From Clec16a is Critical for Autolysosome Function and Purkinje Cell Survival (2016) · cites this paper as [36]
Citations
Cites
Rab proteins as membrane organizers
Zerial, M., & McBride, H. (2001) · Nature Reviews Molecular Cell Biology · doi:10.1038/35052055 · Cited by 3,381
The Mechanisms of Vesicle Budding and Fusion
Bonifacino, J. S., & Glick, B. S. (2004) · Cell · doi:10.1016/s0092-8674(03)01079-1 · Cited by 1,908
The Guanine Nucleotide-Binding Switch in Three Dimensions
Vetter, I. R., & Wittinghofer, A. (2001) · Science · doi:10.1126/science.1062023 · Cited by 1,875
α-Synuclein Blocks ER-Golgi Traffic and Rab1 Rescues Neuron Loss in Parkinson's Models
Cooper, A. A., Gitler, A. D., Cashikar, A. G., Haynes, C. M., Hill, K. J., Bhullar, B., Liu, K., Xu, K., Strathearn, K. E., Liu, F., et al. (2006) · Science · doi:10.1126/science.1129462 · Cited by 1,411
A Class of Membrane Proteins Shaping the Tubular Endoplasmic Reticulum
Voeltz, G. K., Prinz, W. A., Shibata, Y., Rist, J. M., & Rapoport, T. A. (2006) · Cell · doi:10.1016/j.cell.2005.11.047 · Cited by 1,133
Tisdale, E. J., Bourne, J. R., Khosravi-Far, R., Der, C. J., & Balch, W. E. (1992) · The Journal of cell biology · doi:10.1083/jcb.119.4.749 · Cited by 500
Targeting Rab GTPases to distinct membrane compartments
Pfeffer, S. R., & Aivazian, D. (2004) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm1500 · Cited by 462
Transport-vesicle targeting: tethers before SNAREs
Pfeffer, S. R. (1999) · Nature Cell Biology · doi:10.1038/8967 · Cited by 449
The organization of endoplasmic reticulum export complexes.
Bannykh, S. I., Rowe, T., & Balch, W. E. (1996) · The Journal of Cell Biology · doi:10.1083/jcb.135.1.19 · Cited by 440
Procollagen Traverses the Golgi Stack without Leaving the Lumen of Cisternae
Bonfanti, L., Aa, M., Martínez‐Menárguez, J. A., Martella, O., Fusella, A., Baldassarre, M., Buccione, R., Geuze, H. J., Mirоnоv, A. A., & Luini, A. (1998) · Cell · doi:10.1016/s0092-8674(00)81723-7 · Cited by 419
Rab1 recruitment of p115 into a cis-SNARE complex: programming budding COPII vesicles for fusion
Allan, B. B., Moyer, B. D., & Balch, W. E. (2000) · Science · doi:10.1126/science.289.5478.444 · Cited by 418
Golgi maturation visualized in living yeast
Losev, E., Reinke, C., Jellen, J., Strongin, D. E., Bevis, B. J., & Glick, B. S. (2006) · Nature · doi:10.1038/nature04717 · Cited by 396
Live imaging of yeast Golgi cisternal maturation
Matsuura, K., Takeuchi, M., Ichihara, A., Mikuriya, K., & Nakano, A. (2006) · Nature · doi:10.1038/nature04737 · Cited by 373
Confirmation of the arginine-finger hypothesis for the GAP-stimulated GTP-hydrolysis reaction of Ras
Ahmadian, M. R., Stege, P., Scheffzek, K., & Wittinghofer, A. (1997) · Nature Structural Biology · doi:10.1038/nsb0997-686 · Cited by 370
Initial docking of ER‐derived vesicles requires Uso1p and Ypt1p but is independent of SNARE proteins
Cao, X., Ballew, N., & Barlowe, C. K. (1998) · The EMBO Journal · doi:10.1093/emboj/17.8.2156 · Cited by 366
TBC-domain GAPs for Rab GTPases accelerate GTP hydrolysis by a dual-finger mechanism
Pan, X., Eathiraj, S., Munson, M., & Lambright, D. G. (2006) · Nature · doi:10.1038/nature04847 · Cited by 359
GM130 and GRASP65-dependent lateral cisternal fusion allows uniform Golgi-enzyme distribution
Puthenveedu, M. A., Bachert, C., Puri, S., Lanni, F., & Linstedt, A. D. (2006) · Nature Cell Biology · doi:10.1038/ncb1366 · Cited by 345
Shorter, J., Watson, R., Giannakou, M., Clarke, M., Warren, G., & Barr, F. A. (1999) · The EMBO Journal · doi:10.1093/emboj/18.18.4949 · Cited by 336
Self-citationAa, M., Aa, M., Beznoussenko, G. V., Trucco, A., Lupetti, P., Smith, J. D., Geerts, W. J. C., Koster, A. J., Burger, K. N. J., Martone, M. E., et al. (2003) · Developmental Cell · doi:10.1016/s1534-5807(03)00294-6 · Cited by 250
TRAPP I Implicated in the Specificity of Tethering in ER-to-Golgi Transport
Sacher, M. G., Barrowman, J., Wang, W., Horecka, J., Zhang, Y., Pypaert, M., & Ferro‐Novick, S. (2001) · Molecular Cell · doi:10.1016/s1097-2765(01)00190-3 · Cited by 249
De novo formation of transitional ER sites and Golgi structures in Pichia pastoris
Bevis, B. J., Hammond, A. T., Reinke, C., & Glick, B. S. (2002) · Nature Cell Biology · doi:10.1038/ncb852 · Cited by 241
TRAPPI tethers COPII vesicles by binding the coat subunit Sec23
Cai, H., Yu, S. S. B., Menon, S., Cai, Y., Lazarova, D. L., Fu, C., Reinisch, K. M., Hay, J., & Ferro‐Novick, S. (2007) · Nature · doi:10.1038/nature05527 · Cited by 238
Golgins and GTPases, giving identity and structure to the Golgi apparatus
Short, B., Haas, A. K., & Barr, F. A. (2005) · Biochimica et Biophysica Acta (BBA) - Molecular Cell Research · doi:10.1016/j.bbamcr.2005.02.001 · Cited by 237
Self-citationA GTPase-activating protein controls Rab5 function in endocytic trafficking
Haas, A. K., Fuchs, E., Kopajtich, R., & Barr, F. A. (2005) · Nature Cell Biology · doi:10.1038/ncb1290 · Cited by 226
Self-citationA GRASP55-rab2 effector complex linking Golgi structure to membrane traffic
Short, B., Preisinger, C., Körner, R., Kopajtich, R., Byron, O., & Barr, F. A. (2001) · The Journal of Cell Biology · doi:10.1083/jcb.200108079 · Cited by 226
Self-citationWatson, P., Townley, A. K., Koka, P., Palmer, K. J., & Stephens, D. J. (2006) · Traffic · doi:10.1111/j.1600-0854.2006.00493.x · Cited by 221
Self-citationPartitioning of the Golgi Apparatus during Mitosis in Living HeLa Cells
Shima, D. T., Haldar, K., Pepperkok, R., Watson, R., & Warren, G. (1997) · The Journal of Cell Biology · doi:10.1083/jcb.137.6.1211 · Cited by 220
Golgi biogenesis in Toxoplasma gondii
Pelletier, L., Stern, C. A., Pypaert, M., Sheff, D. R., Ngô, H. M., Roper, N., He, C. Y., Hu, K., Toomre, D. K., Coppens, I., et al. (2002) · Nature · doi:10.1038/nature00946 · Cited by 214
The TRAPP Complex Is a Nucleotide Exchanger for Ypt1 and Ypt31/32
Jones, S., Newman, C., Liu, F., & Segev, N. (2000) · Molecular Biology of the Cell · doi:10.1091/mbc.11.12.4403 · Cited by 204
Trapp Stimulates Guanine Nucleotide Exchange on Ypt1p
Wang, W., Sacher, M. G., & Ferro‐Novick, S. (2000) · The Journal of Cell Biology · doi:10.1083/jcb.151.2.289 · Cited by 199
Interactions of three domains distinguishing the Ras-related GTP-binding proteins Ypt1 and Sec4
Brennwald, P., & Novick, P. (1993) · Nature · doi:10.1038/362560a0 · Cited by 190
Albert, Š., Will, E., & Gallwitz, D. (1999) · The EMBO Journal · doi:10.1093/emboj/18.19.5216 · Cited by 168
A yeast GTPase-activating protein that interacts specifically with a member of the Ypt/Rab family
Strom, M., Vollmer, P., Tan, T. J., & Gallwitz, D. (1993) · Nature · doi:10.1038/361736a0 · Cited by 168
Sec16 is a Determinant of Transitional ER Organization
Connerly, P. L., Esaki, M., Montegna, E. A., Strongin, D. E., Levi, S. K., Soderholm, J., & Glick, B. S. (2005) · Current Biology · doi:10.1016/j.cub.2005.06.065 · Cited by 165
Fuchs, E., Haas, A. K., Spooner, R. A., Yoshimura, S., Lord, J. M., & Barr, F. A. (2007) · The Journal of Cell Biology · doi:10.1083/jcb.200612068 · Cited by 161
Self-citationMediation of the Attachment or Fusion Step in Vesicular Transport by the GTP-Binding Ypt1 Protein
Segev, N. (1991) · Science · doi:10.1126/science.1904626 · Cited by 154
Variations on the Intracellular Transport Theme: Maturing Cisternae and Trafficking Tubules
Aa, M., Weidman, P. J., & Luini, A. (1997) · The Journal of Cell Biology · doi:10.1083/jcb.138.3.481 · Cited by 141
Rab2 Is Essential for the Maturation of Pre-Golgi Intermediates
Tisdale, E. J., & Balch, W. E. (1996) · Journal of Biological Chemistry · doi:10.1074/jbc.271.46.29372 · Cited by 139
Rtn1p Is Involved in Structuring the Cortical Endoplasmic Reticulum
Craene, J. D., Coleman, J., de Martin, P. E., Pypaert, M., Anderson, S., Yates, J. R., Ferro‐Novick, S., & Novick, P. (2006) · Molecular Biology of the Cell · doi:10.1091/mbc.e06-01-0080 · Cited by 138
Álvarez, C., Fujita, H., Hubbard, A. L., & Sztul, E. S. (1999) · The Journal of Cell Biology · doi:10.1083/jcb.147.6.1205 · Cited by 129
Barr, F. A., Preisinger, C., Kopajtich, R., & Körner, R. (2001) · The Journal of Cell Biology · doi:10.1083/jcb.200108102 · Cited by 114
Self-citationMembrane Tethering and Fusion in the Secretory and Endocytic Pathways
Waters, M. G., & Hughson, F. M. (2000) · Traffic · doi:10.1034/j.1600-0854.2000.010802.x · Cited by 113
Morsomme, P., & Riezman, H. (2002) · Developmental Cell · doi:10.1016/s1534-5807(02)00133-8 · Cited by 107
TRAPP stably associates with the Golgi and is required for vesicle docking
Barrowman, J., Sacher, M. G., & Ferro‐Novick, S. (2000) · The EMBO Journal · doi:10.1093/emboj/19.5.862 · Cited by 106
Crystal structure of the GAP domain of Gyp1p: first insights into interaction with Ypt/Rab proteins
Rak, A., Fedorov, R., Alexandrov, K. A., Albert, Š., Goody, R. S., Gallwitz, D., & Scheidig, A. J. (2000) · The EMBO Journal · doi:10.1093/emboj/19.19.5105 · Cited by 98
Two New Members of a Family of Ypt/Rab GTPase Activating Proteins
Albert, Š., & Gallwitz, D. (1999) · Journal of Biological Chemistry · doi:10.1074/jbc.274.47.33186 · Cited by 95
Reticulon 3 is involved in membrane trafficking between the endoplasmic reticulum and Golgi
Wakana, Y., Koyama, S., Nakajima, K., Hatsuzawa, K., Nagahama, M., Tani, K., Hauri, H., Melançon, P., & Tagaya, M. (2005) · Biochemical and Biophysical Research Communications · doi:10.1016/j.bbrc.2005.07.012 · Cited by 86
COPII–Golgi protein interactions regulate COPII coat assembly and Golgi size
Guo, Y., & Linstedt, A. D. (2006) · The Journal of Cell Biology · doi:10.1083/jcb.200604058 · Cited by 85
Antoni, A. D., Schmitzová, J., Trepte, H.-H., Gallwitz, D., & Albert, Š. (2002) · Journal of Biological Chemistry · doi:10.1074/jbc.m205783200 · Cited by 84
Peter, F., Nuoffer, C., Pind, S., & Balch, W. E. (1994) · The Journal of Cell Biology · doi:10.1083/jcb.126.6.1393 · Cited by 82
mBet3p is required for homotypic COPII vesicle tethering in mammalian cells
Yu, S. S. B., Satoh, A., Pypaert, M., Mullen, K., Hay, J., & Ferro‐Novick, S. (2006) · The Journal of Cell Biology · doi:10.1083/jcb.200603044 · Cited by 77
Organelle identity and the targeting of peripheral membrane proteins
Munro, S. (2002) · Current Opinion in Cell Biology · doi:10.1016/s0955-0674(02)00350-2 · Cited by 68
MICAL-1 isoforms, novel rab1 interacting proteins
Weide, T., Teuber, J., Bayer, M. E., & Barnekow, A. (2003) · Biochemical and Biophysical Research Communications · doi:10.1016/s0006-291x(03)00918-5 · Cited by 59
Glick, B. S. (2002) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm877 · Cited by 46
GTP Hydrolysis Is Not Important for Ypt1 GTPase Function in Vesicular Transport
Richardson, C. J., Jones, S., Litt, R. J., & Segev, N. (1998) · Molecular and Cellular Biology · doi:10.1128/mcb.18.2.827 · Cited by 45
Distinct and specific GAP activities in rat pancreas on the yeast GTP‐binding proteins Ypt1 and Sec4
Jena, B. P., Brennwald, P., Garrett, M. D., Novick, P., & Jamieson, J. D. (1992) · FEBS Letters · doi:10.1016/0014-5793(92)80727-x · Cited by 12
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Self-citation
Metadata
- Authors
- Haas, A. K., Yoshimura, S.-I., Stephens, D. J., Preisinger, C., Fuchs, E., & Barr, F. A.
- Affiliations
- University of Liverpool (GB)
- University of Bristol (GB)
- Max Planck Institute of Biochemistry (DE)
- Corresponding author
- Barr, Francis A.
- Venue
- Journal of Cell Science
- Publisher
- The Company of Biologists
- Published
- 2007-09-01
- Volume
- 120
- Issue
- 17
- Pages
- 2997-3010
- ISSN
- 0021-9533 (ISSN-L)
- 1477-9137
- OpenAlex
- W2064782801
- Cited by
- 201
- References
- 56
- Citations by year
- 2025: 8 · 2024: 5 · 2023: 8 · 2022: 7 · 2021: 11 · 2020: 8 · 2019: 10 · 2018: 9 · 2017: 10 · 2016: 16 · 2015: 9 · 2014: 13 · 2013: 15 · 2012: 21
- FWCI
- 4.81
- Type
- journal article
- Language
- en
- Open access
- closed
- Locations
- Journal of Cell Science (publishedVersion)
- PubMed (publishedVersion)
- Explore Bristol Research (publishedVersion)
- Max Planck Institute for Plasma Physics (submittedVersion)
- Bristol Research (University of Bristol) (submittedVersion)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Cell Biology › Cellular transport and secretion
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Protein Kinase Regulation and GTPase Signaling
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Physiology › Calcium signaling and nucleotide metabolism
- Keywords
- Rab GTPases, Rab1, Rab GTPase-activating protein, reticulons, retrograde transport, secretory pathway, ER-Golgi transport, membrane trafficking, functional redundancy
- MeSH terms
- rab11 GTP-Binding Proteins, Animals, Biological Transport, Endoplasmic Reticulum, Golgi Apparatus, HeLa Cells, Humans, Nerve Tissue Proteins, Phenotype, Recombinant Fusion Proteins, Genome, Human, rab GTP-Binding Proteins, rab1 GTP-Binding Proteins, Two-Hybrid System Techniques, RNA Interference
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