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Time scale of eutherian evolution estimated without assuming a constant rate of molecular evolution.

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Hasegawa, Masami, Thorne, Jeffrey L., Kishino, Hirohisa·2003·Genes & Genetic Systems

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Abstract

Controversies over the molecular clock hypothesis were reviewed. Since it is evident that the molecular clock does not hold in an exact sense, accounting for evolution of the rate of molecular evolution is a prerequisite when estimating divergence times with molecular sequences. Recently proposed statistical methods that account for this rate variation are overviewed and one of these procedures is applied to the mitochondrial protein sequences and to the nuclear gene sequences from many mammalian species in order to estimate the time scale of eutherian evolution. This Bayesian method not only takes account of the variation of molecular evolutionary rate among lineages and among genes, but it also incorporates fossil evidence via constraints on node times. With denser taxonomic sampling and a more realistic model of molecular evolution, this Bayesian approach is expected to increase the accuracy of divergence time estimates.

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Authors: Hasegawa, M., Thorne, J. L., & Kishino, H.
Affiliations: The Graduate University for Advanced Studies, SOKENDAI (JP)
North Carolina State University (US)
The University of Tokyo (JP)
ORCID: Hasegawa, Masami
Thorne, Jeffrey L.
Kishino, Hirohisa
Venue: Genes & Genetic Systems
Publisher: Genetics Society of Japan
Published: 2003
Volume: 78
Issue: 4
Pages: 267-283
ISSN: 1341-7568 (ISSN-L)
1880-5779
DOI: 10.1266/ggs.78.267
OpenAlex: W2001967468
Cited by: 145
References: 98
Citations by year: 2026: 1 · 2025: 1 · 2023: 1 · 2022: 1 · 2021: 1 · 2020: 3 · 2019: 1 · 2017: 1 · 2016: 1 · 2015: 3 · 2014: 21 · 2013: 3 · 2012: 7
FWCI: 2.28
Type: journal article
Language: en
Open access: bronze
doi.org
Locations: Genes & Genetic Systems (publishedVersion)
PubMed (publishedVersion)
Funders: National Science Foundation
Mitsubishi Foundation
Japan Society for the Promotion of Science
Topics: Physical Sciences › Earth and Planetary Sciences › Paleontology › Evolution and Paleontology Studies
Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics and Phylogenetic Studies
Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Evolution and Genetic Dynamics
Keywords: divergence time estimation, molecular clock, rate variation, Bayesian phylogenetics, fossil calibration, molecular evolution rate
MeSH terms: Animals, Bayes Theorem, Fossils, Humans, Mathematics, Models, Biological, Models, Genetic, Phylogeny, Probability, Time Factors, Genetic Variation, Evolution, Molecular

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Time scale of eutherian evolution estimated without assuming a constant rate of molecular evolution.

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