The DOI matches its Crossref record; 2 of the 2 references it cites were found in a registry or an index.
GeneMANIA: Fast gene network construction and function prediction for Cytoscape
Open accessAbstract
The GeneMANIA Cytoscape app enables users to construct a composite gene-gene functional interaction network from a gene list. The resulting network includes the genes most related to the original list, and functional annotations from Gene Ontology. The edges are annotated with details about the publication or data source the interactions were derived from. The app leverages GeneMANIA’s database of 1800+ networks, containing over 500 million interactions spanning 8 organisms: A. thaliana, C. elegans, D. melanogaster, D. rerio, H. sapiens, M. musculus, R. norvegicus , and S. cerevisiae . Users may also import their own organisms, networks, and expression profiles. The app is compatible with Cytoscape versions 2 and 3.
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Cytoscape: A software Environment for integrated models of biomolecular interaction networks
Shannon, P., Markiel, A., Ozier, O., Baliga, N. S., Wang, J. T., Ramage, D., Amin, N., Schwikowski, B., & Ideker, T. (2003) · Genome Research · doi:10.1101/gr.1239303 · Cited by 51,888
GeneMANIA Prediction Server 2013 Update
Zuberi, K., Franz, M., Rodriguez, H., Montojo, J., Lopes, C. T., Bader, G. D., & Morris, Q. (2013) · Nucleic Acids Research · doi:10.1093/nar/gkt533 · Cited by 396
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Cited by
Arloth, J., Bogdan, R., Weber, P., Frishman, G., Menke, A., Wagner, K. V., Balsevich, G., Schmidt, M. V., Karbalai, N., Czamara, D., et al. (2015) · Neuron · doi:10.1016/j.neuron.2015.05.034 · Cited by 142
Luo, R., Wang, Y., Xu, P., Cao, G., Zhao, Y., Shao, X., Li, Y.-X., Chang, C., Peng, C., & Wang, Y.-L. (2016) · Scientific Reports · doi:10.1038/srep19588 · Cited by 100
Cicconardi, F., Milanetti, E., Pinheiro de Castro, E. C., Mazo-Vargas, A., Van Belleghem, S. M., Ruggieri, A. A., Rastas, P., Hanly, J., Evans, E., Jiggins, C. D., et al. (2023) · Nature Communications · doi:10.1038/s41467-023-41412-5 · Cited by 81
Validation of a priori candidate Alzheimer’s disease SNPs with brain amyloid-beta deposition
Vacher, M., Porter, T., Villemagne, V. L., Milicic, L., Peretti, M., Fowler, C., Martins, R., Rainey-Smith, S., Ames, D., Masters, C. L., et al. (2019) · Scientific Reports · doi:10.1038/s41598-019-53604-5 · Cited by 26
Alloza, I., Goikuria, H., Idro, J. L., Triviño, J. C., Fernández Velasco, J. M., Elizagaray, E., García-Barcina, M., Montoya-Murillo, G., Sarasola, E., Vega Manrique, R., et al. (2017) · Scientific Reports · doi:10.1038/s41598-017-03687-9 · Cited by 25
Metadata
- Authors
- Montojo, J., Zuberi, K., Rodriguez, H., Bader, G. D., & Morris, Q.
- Venue
- F1000Research
- Publisher
- F1000 Research Ltd
- Published
- 2014-07-01
- Volume
- 3
- Pages
- 153
- ISSN
- 2046-1402 (ISSN-L)
- OpenAlex
- W2028689806
- Cited by
- 274
- References
- 2
- FWCI
- 7.67
- Type
- journal article
- Language
- en
- Open access
- gold
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Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.
