Recent advances in (therapeutic protein) drug development
Open accessAbstract
Therapeutic protein drugs are an important class of medicines serving patients most in need of novel therapies. Recently approved recombinant protein therapeutics have been developed to treat a wide variety of clinical indications, including cancers, autoimmunity/inflammation, exposure to infectious agents, and genetic disorders. The latest advances in protein-engineering technologies have allowed drug developers and manufacturers to fine-tune and exploit desirable functional characteristics of proteins of interest while maintaining (and in some cases enhancing) product safety or efficacy or both. In this review, we highlight the emerging trends and approaches in protein drug development by using examples of therapeutic proteins approved by the U.S. Food and Drug Administration over the previous five years (2011–2016, namely January 1, 2011, through August 31, 2016).
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With such high-expression yields in flasks, production of antibody fragments would not require scale-up to bioreactors during drug development.
“With such high-expression yields in the flasks, the production of antibody fragments would not require a scale-up to bioreactors during the drug development process [129].”
From Evolution of Escherichia coli Expression System in Producing Antibody Recombinant Fragments (2020) · cites this paper as [129]
The Protein engineering section discusses the complexity of therapeutic-protein manufacturing, but does not address antibody-fragment yields in flasks or whether those yields eliminate bioreactor scale-up. Searches for those terms and for flask production without scale-up found no passage supporting the claim; page numbers were not available in our copy. (LLM, conf=0.72)
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Glycosylation as a strategy to improve antibody-based therapeutics
Jefferis, R. (2009) · Nature Reviews Drug Discovery · doi:10.1038/nrd2804 · Cited by 829 · see citing works
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Research works printed but not linked: 56
- [1]Kimchi-Sarfaty C Schiller T Hamasaki-Katagiri N: Building better drugs: developing and regulating engineered therapeutic proteins. Trends Pharmacol Sci. 2013; 34(10): 534– 48. 10.1016/j.tips.2013.08.005 24060103 · DOI
- [2]Carter PJ: Introduction to current and future protein therapeutics: a protein engineering perspective. Exp Cell Res. 2011; 317(9): 1261– 9. 10.1016/j.yexcr.2011.02.013 21371474 · DOI
- [3]Walsh G: Biopharmaceutical benchmarks 2014. Nat Biotechnol. 2014; 32(10): 992– 1000. 10.1038/nbt.3040 25299917 · DOI · Paper page
- [4]Schellekens H: Biosimilar therapeutics-what do we need to consider? NDT Plus. 2009; 2(Suppl_1): i27– i36. 10.1093/ndtplus/sfn177 19461855 PMC2638545 · DOI
- [5]Bandaranayake AD Almo SC: Recent advances in mammalian protein production. FEBS Lett. 2014; 588(2): 253– 60. 10.1016/j.febslet.2013.11.035 24316512 PMC3924552 · DOI · Paper page
- [6]Butler M Meneses-Acosta A: Recent advances in technology supporting biopharmaceutical production from mammalian cells. Appl Microbiol Biotechnol. 2012; 96(4): 885– 94. 10.1007/s00253-012-4451-z 23053101 PMC7080107 · DOI
- [7]Zhu J: Mammalian cell protein expression for biopharmaceutical production. Biotechnol Adv. 2012; 30(5): 1158– 70. 10.1016/j.biotechadv.2011.08.022 21968146 · DOI
- [8]Cipriano D Burnham M Hughes JV: Effectiveness of various processing steps for viral clearance of therapeutic proteins: database analyses of commonly used steps. Methods Mol Biol. 2012; 899: 277– 92. 10.1007/978-1-61779-921-1_18 22735960 F1000 Recommendation · DOI
- [9]Chirino AJ Mire-Sluis A: Characterizing biological products and assessing comparability following manufacturing changes. Nat Biotechnol. 2004; 22(11): 1383– 91. 10.1038/nbt1030 15529163 · DOI
- [10]Tobin PH Richards DH Callender RA: Protein engineering: a new frontier for biological therapeutics. Curr Drug Metab. 2014; 15(7): 743– 56. 10.2174/1389200216666141208151524 25495737 PMC4931902 · DOI
- [11]Wurm FM: Production of recombinant protein therapeutics in cultivated mammalian cells. Nat Biotechnol. 2004; 22(11): 1393– 8. 10.1038/nbt1026 15529164 · DOI · Paper page
- [12]Lutz S: Beyond directed evolution--semi-rational protein engineering and design. Curr Opin Biotechnol. 2010; 21(6): 734– 43. 10.1016/j.copbio.2010.08.011 20869867 PMC2982887 · DOI
- [13]Levin D Golding B Strome SE: Fc fusion as a platform technology: potential for modulating immunogenicity. Trends Biotechnol. 2015; 33(1): 27– 34. 10.1016/j.tibtech.2014.11.001 25488117 · DOI
- [14]Rath T Baker K Dumont JA: Fc-fusion proteins and FcRn: structural insights for longer-lasting and more effective therapeutics. Crit Rev Biotechnol. 2015; 35(2): 235– 54. 10.3109/07388551.2013.834293 24156398 PMC4876602 · DOI
- [15]Andersen JT Pehrson R Tolmachev V: Extending half-life by indirect targeting of the neonatal Fc receptor (FcRn) using a minimal albumin binding domain. J Biol Chem. 2011; 286(7): 5234– 41. 10.1074/jbc.M110.164848 21138843 PMC3037636 F1000 Recommendation · DOI
- [16]Turecek PL Bossard MJ Schoetens F: PEGylation of Biopharmaceuticals: A Review of Chemistry and Nonclinical Safety Information of Approved Drugs. J Pharm Sci. 2016; 105(2): 460– 75. 10.1016/j.xphs.2015.11.015 26869412 · DOI · Paper page
- [17]Strohl WR: Fusion Proteins for Half-Life Extension of Biologics as a Strategy to Make Biobetters. BioDrugs. 2015; 29(4): 215– 39. 10.1007/s40259-015-0133-6 26177629 PMC4562006 · DOI
- [18]Coppola A Di Capua M De Simone C: Primary prophylaxis in children with haemophilia. Blood Transfus. 2008; 6(Suppl 2): s4– 11. 19105503 PMC2652217
- [19]Casi G Neri D: Antibody-drug conjugates: basic concepts, examples and future perspectives. J Control Release. 2012; 161(2): 422– 8. 10.1016/j.jconrel.2012.01.026 22306430 · DOI
- [21]Costa AR Rodrigues ME Henriques M: Glycosylation: impact, control and improvement during therapeutic protein production. Crit Rev Biotechnol. 2014; 34(4): 281– 99. 10.3109/07388551.2013.793649 23919242 · DOI
- [24]Schieppati A Henter JI Daina E: Why rare diseases are an important medical and social issue. Lancet. 2008; 371(9629): 2039– 41. 10.1016/S0140-6736(08)60872-7 18555915 · DOI
- [26]Roger SD: Biosimilars: current status and future directions. Expert Opin Biol Ther. 2010; 10(7): 1011– 8. 10.1517/14712591003796553 20384525 · DOI
- [34]Schellekens H Moors E: Clinical comparability and European biosimilar regulations. Nat Biotechnol. 2010; 28(1): 28– 31. 10.1038/nbt0110-28 20062035 · DOI
- [35]Walsh G: Biopharmaceutical benchmarks 2010. Nat Biotechnol. 2010; 28(9): 917– 24. 10.1038/nbt0910-917 20829826 · DOI
- [39]Shankar G Pendley C Stein KE: A risk-based bioanalytical strategy for the assessment of antibody immune responses against biological drugs. Nat Biotechnol. 2007; 25(5): 555– 61. 10.1038/nbt1303 17483842 · DOI
- [40]Yin L Chen X Vicini P: Therapeutic outcomes, assessments, risk factors and mitigation efforts of immunogenicity of therapeutic protein products. Cell Immunol. 2015; 295(2): 118– 26. 10.1016/j.cellimm.2015.03.002 25880103 F1000 Recommendation · DOI
- [41]Maertens B Spriestersbach A von Groll U: Gene optimization mechanisms: a multi-gene study reveals a high success rate of full-length human proteins expressed in Escherichia coli. Protein Sci. 2010; 19(7): 1312– 26. 10.1002/pro.408 20506237 PMC2970903 · DOI
- [42]Mauro VP Chappell SA: A critical analysis of codon optimization in human therapeutics. Trends Mol Med. 2014; 20(11): 604– 13. 10.1016/j.molmed.2014.09.003 25263172 PMC4253638 F1000 Recommendation · DOI · Paper page
- [43]Hunt R Sauna ZE Ambudkar SV: Silent (synonymous) SNPs: should we care about them? Methods Mol Biol. 2009; 578: 23– 39. 10.1007/978-1-60327-411-1_2 19768585 · DOI
- [44]Tsai C Sauna ZE Kimchi-Sarfaty C: Synonymous mutations and ribosome stalling can lead to altered folding pathways and distinct minima. J Mol Biol. 2008; 383(2): 281– 91. 10.1016/j.jmb.2008.08.012 18722384 PMC2628389 · DOI
- [45]Sauna ZE Kimchi-Sarfaty C: Understanding the contribution of synonymous mutations to human disease. Nat Rev Genet. 2011; 12(10): 683– 91. 10.1038/nrg3051 21878961 · DOI · Paper page
- [46]Houdebine LM: Production of pharmaceutical proteins by transgenic animals. Comp Immunol Microbiol Infect Dis. 2009; 32(2): 107– 21. 10.1016/j.cimid.2007.11.005 18243312 PMC7112688 · DOI
- [47]van Veen HA Koiter J Vogelezang CJ: Characterization of recombinant human C1 inhibitor secreted in milk of transgenic rabbits. J Biotechnol. 2012; 162(2–3): 319– 26. 10.1016/j.jbiotec.2012.09.005 22995741 F1000 Recommendation · DOI
- [48]Hellwig S Drossard J Twyman RM: Plant cell cultures for the production of recombinant proteins. Nat Biotechnol. 2004; 22(11): 1415– 22. 10.1038/nbt1027 15529167 · DOI
- [49]Grabowski GA Golembo M Shaaltiel Y: Taliglucerase alfa: an enzyme replacement therapy using plant cell expression technology. Mol Genet Metab. 2014; 112(1): 1– 8. 10.1016/j.ymgme.2014.02.011 24630271 · DOI
- [50]Fox JL: First plant-made biologic approved. Nat Biotech. 2012; 30(6): 472 10.1038/nbt0612-472 · DOI
- [51]Mössner E Brünker P Moser S: Increasing the efficacy of CD20 antibody therapy through the engineering of a new type II anti-CD20 antibody with enhanced direct and immune effector cell-mediated B-cell cytotoxicity. Blood. 2010; 115(22): 4393– 402. 10.1182/blood-2009-06-225979 20194898 PMC2881503 F1000 Recommendation · DOI
- [52]Peters RT Low SC Kamphaus GD: Prolonged activity of factor IX as a monomeric Fc fusion protein. Blood. 2010; 115(10): 2057– 64. 10.1182/blood-2009-08-239665 20056791 · DOI
- [53]Dumont JA Liu T Low SC: Prolonged activity of a recombinant factor VIII-Fc fusion protein in hemophilia A mice and dogs. Blood. 2012; 119(13): 3024– 30. 10.1182/blood-2011-08-367813 22246033 PMC3953019 F1000 Recommendation · DOI
- [54]Powell JS Josephson NC Quon D: Safety and prolonged activity of recombinant factor VIII Fc fusion protein in hemophilia A patients. Blood. 2012; 119(13): 3031– 7. 10.1182/blood-2011-09-382846 22223821 PMC3646317 F1000 Recommendation · DOI
- [55]Pelegri-O'Day EM Lin EW Maynard HD: Therapeutic protein-polymer conjugates: advancing beyond PEGylation. J Am Chem Soc. 2014; 136(41): 14323– 32. 10.1021/ja504390x 25216406 F1000 Recommendation · DOI · Paper page
- [62]Moreland L Bate G Kirkpatrick P: Abatacept. Nat Rev Drug Discov. 2006; 5(3): 185– 6. 10.1038/nrd1989 16557658 · DOI
- [63]Kirk AD Harlan DM Armstrong NN: CTLA4-Ig and anti-CD40 ligand prevent renal allograft rejection in primates. Proc Natl Acad Sci U S A. 1997; 94(16): 8789– 94. 10.1073/pnas.94.16.8789 9238056 PMC23132 · DOI
- [64]Levisetti MG Padrid PA Szot GL: Immunosuppressive effects of human CTLA4Ig in a non-human primate model of allogeneic pancreatic islet transplantation. J Immunol. 1997; 159(11): 5187– 91. 9548454
- [65]Larsen CP Pearson TC Adams AB: Rational development of LEA29Y (belatacept), a high-affinity variant of CTLA4-Ig with potent immunosuppressive properties. Am J Transplant. 2005; 5(3): 443– 53. 10.1111/j.1600-6143.2005.00749.x 15707398 · DOI
- [66]Vincenti F Charpentier B Vanrenterghem Y: A phase III study of belatacept-based immunosuppression regimens versus cyclosporine in renal transplant recipients (BENEFIT study). Am J Transplant. 2010; 10(3): 535– 46. 10.1111/j.1600-6143.2009.03005.x 20415897 F1000 Recommendation · DOI
- [67]Vincenti F Dritselis A Kirkpatrick P: Belatacept. Nat Rev Drug Discov. 2011; 10: 655– 6. 10.1038/nrd3536 21878974 · DOI
- [68]Pescovitz MD: Rituximab, an anti-cd20 monoclonal antibody: history and mechanism of action. Am J Transplant. 2006; 6(5 Pt 1): 859– 66. 10.1111/j.1600-6143.2006.01288.x 16611321 · DOI
- [69]Reff ME Carner K Chambers KS: Depletion of B cells in vivo by a chimeric mouse human monoclonal antibody to CD20. Blood. 1994; 83(2): 435– 45. 7506951
- [70]Jiang XR Song A Bergelson S: Advances in the assessment and control of the effector functions of therapeutic antibodies. Nat Rev Drug Discov. 2011; 10(2): 101– 11. 10.1038/nrd3365 21283105 · DOI
- [71]Nelson AL Dhimolea E Reichert JM: Development trends for human monoclonal antibody therapeutics. Nat Rev Drug Discov. 2010; 9(10): 767– 74. 10.1038/nrd3229 20811384 · DOI
- [72]Beck A: Biosimilar, biobetter and next generation therapeutic antibodies. MAbs. 2011; 3(2): 107– 10. 10.4161/mabs.3.2.14785 21285536 PMC3092613 · DOI
- [73]Niwa R Satoh M: The current status and prospects of antibody engineering for therapeutic use: focus on glycoengineering technology. J Pharm Sci. 2015; 104(3): 930– 41. 10.1002/jps.24316 25583555 · DOI
- [74]Herter S Birk MC Klein C: Glycoengineering of therapeutic antibodies enhances monocyte/macrophage-mediated phagocytosis and cytotoxicity. J Immunol. 2014; 192(5): 2252– 60. 10.4049/jimmunol.1301249 24489098 PMC3932809 F1000 Recommendation · DOI
- [75]Ferrara C Grau S Jäger C: Unique carbohydrate-carbohydrate interactions are required for high affinity binding between FcgammaRIII and antibodies lacking core fucose. Proc Natl Acad Sci U S A. 2011; 108(31): 12669– 74. 10.1073/pnas.1108455108 21768335 PMC3150898 F1000 Recommendation · DOI · Paper page
- [76]Goede V Fischer K Busch R: Obinutuzumab plus chlorambucil in patients with CLL and coexisting conditions. N Engl J Med. 2014; 370(12): 1101– 10. 10.1056/NEJMoa1313984 24401022 F1000 Recommendation · DOI
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- Authors
- Lagassé, H. A. D., Alexaki, A., Simhadri, V. L., Katagiri, N. H., Jankowski, W., Sauna, Z. E., & Kimchi-Sarfaty, C.
- Affiliations
- Center for Biologics Evaluation and Research (US)
- Corresponding author
- Sauna, Zuben E.
- ORCID
- Venue
- F1000Research
- Publisher
- F1000 Research Ltd
- Published
- 2017-02-07
- Volume
- 6
- Pages
- 113
- ISSN
- 2046-1402 (ISSN-L)
- PMC
- PMC5302153
- OpenAlex
- W2586724023
- Cited by
- 481
- References
- 1
- Citations by year
- 2026: 17 · 2025: 38 · 2024: 64 · 2023: 57 · 2022: 60 · 2021: 59 · 2020: 72 · 2019: 64 · 2018: 45 · 2017: 5
- FWCI
- 7.74
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Licence
- Locations
- F1000Research (publishedVersion, cc-by)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
- Topics
- Health Sciences › Medicine › Radiology, Nuclear Medicine and Imaging › Monoclonal and Polyclonal Antibodies Research
- Life Sciences › Immunology and Microbiology › Immunology › Biosimilars and Bioanalytical Methods
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Protein purification and stability
- Keywords
- therapeutic proteins, recombinant therapeutic proteins, protein engineering, FDA-approved drugs, drug development, cancer therapy, infectious disease exposure, genetic disorders
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