The DOI matches its Crossref record; 6 of the 6 references it cites were found in a registry or an index.
Population Genomics: Whole-Genome Analysis of Polymorphism and Divergence in Drosophila simulans
Open accessAbstract
The population genetic perspective is that the processes shaping genomic variation can be revealed only through simultaneous investigation of sequence polymorphism and divergence within and between closely related species. Here we present a population genetic analysis of Drosophila simulans based on whole-genome shotgun sequencing of multiple inbred lines and comparison of the resulting data to genome assemblies of the closely related species, D. melanogaster and D. yakuba. We discovered previously unknown, large-scale fluctuations of polymorphism and divergence along chromosome arms, and significantly less polymorphism and faster divergence on the X chromosome. We generated a comprehensive list of functional elements in the D. simulans genome influenced by adaptive evolution. Finally, we characterized genomic patterns of base composition for coding and noncoding sequence. These results suggest several new hypotheses regarding the genetic and biological mechanisms controlling polymorphism and divergence across the Drosophila genome, and provide a rich resource for the investigation of adaptive evolution and functional variation in D. simulans.
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Cites
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Cited by
DnaSP v5: a software for comprehensive analysis of DNA polymorphism data
Librado, P., & Rozas, J. (2009) · Bioinformatics · doi:10.1093/bioinformatics/btp187 · Cited by 16,017
Evolution of genes and genomes on the Drosophila phylogeny
Drosophila 12 Genomes Consortium (2007) · Nature · doi:10.1038/nature06341 · Cited by 2,010
Linkage disequilibrium--understanding the evolutionary past and mapping the medical future.
Slatkin, M. (2008) · Nature Reviews Genetics · doi:10.1038/nrg2361 · Cited by 1,614
Cruickshank, T. E., & Hahn, M. W. (2014) · Molecular Ecology · doi:10.1111/mec.12796 · Cited by 1,061
Self-citationDeterminants of genetic diversity
Ellegren, H., & Galtier, N. (2016) · Nature Reviews Genetics · doi:10.1038/nrg.2016.58 · Cited by 874
Metadata
- Authors
- Begun, D. J., Holloway, A. K., Stevens, K., Hillier, L. W., Poh, Y.-P., Hahn, M. W., Nista, P. M., Jones, C. D., Kern, A. D., Dewey, C. N., Pachter, L., Myers, E., & Langley, C. H.
- Venue
- PLoS Biology
- Publisher
- Public Library of Science (PLoS)
- Published
- 2007-11-06
- Volume
- 5
- Issue
- 11
- Pages
- e310
- ISSN
- 1544-9173 (ISSN-L)
- 1545-7885
- OpenAlex
- W2126334905
- Cited by
- 626
- References
- 6
- FWCI
- 31.48
- Type
- journal article
- Language
- en
- Open access
- gold
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