Global Functional Atlas of Escherichia coli Encompassing Previously Uncharacterized Proteins

Cited by (389)

Items 301–389 of 389

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    Vijaykumar Yogesh Muley, Vishal Acharya · 2012 · SpringerBriefs in systems biology
  4. Characterization of Escherichia coli Single-gene Deletion Mutants Impaired in Bacteriophage Reproduction
    Kelly Reimer · 2013 · TSpace (University of Toronto)
  5. Predicting direct physical interactions in multimeric proteins with deep learning
    Mu Gao, Davi Nakajima An, Jerry M. Parks, Jeffrey Skolnick · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
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  7. Four Ab Initio Whole Cell Kinetic Models of Bacillus subtilis 168 (bsuLL25) 6051-HGW (bshSM25), N33 (bsuN33SS25), FUA2231 (bsuGR25)
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  10. Lateral Genetic Transfer and Cellular Networks
    Elizabeth Skippington, Mark A. Ragan · 2013 · Springer eBooks
  11. Quantitative and Systems-Based Approaches for Deciphering Bacterial Membrane Interactome and Gene Function
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  12. Recent advances in the techniques of protein-protein interaction study
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  13. Proteomics Defines Protein Interaction Network of Signaling Pathways
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  15. Genetic Interaction Scoring Procedure for Bacterial Species
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  16. Prediction of Intra‐ and Interspecies Protein–Protein Interactions Facilitating Systems Biology Studies
    Sylvia Schleker, Seshan Ananthasubramanian, Judith Klein‐Seetharaman, Madhavi K. Ganapathiraju · 2013 · Methods and principles in medicinal chemistry
  17. Computational Prediction of Gene Function From High-throughput Data Sources
    Sara Mostafavi · 2011 · TSpace (University of Toronto)
  18. C 4 -dicarboxylate metabolons: Interaction of C 4 -dicarboxylate transporters of Escherichia coli with cytosolic enzymes
    Christopher Schubert, Gottfried Unden · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
  19. Regulatory interactions of enzymes of the citric acid cycle in Bacillus subtilis
    Frederik M. Meyer · 2013 · eDiss (Georg-August-Universität Göttingen)
  20. Faculty Opinions recommendation of HMCES Maintains Genome Integrity by Shielding Abasic Sites in Single-Strand DNA.
    Houra Merrikh · 2019 · Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature
  21. Identification and characterization of novel genes involved in DNA double strand break repair process in the yeast Saccharomyces cerevisiae
    Katayoun Omidi · 2017 · Carleton University's Institutional Repository (MacOdrum Library, Carleton University)
  22. Learning gene interactions and functional landscapes from entire bacterial proteomes
    Palash Sethi, Marc G. Chevrette, Juannan Zhou · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
  23. Mass spectrometry in clinical protein biomarker discovery
    Ville Parviainen · 2014 · Työväentutkimus Vuosikirja
  24. Inference, Orthology, and Inundation: Addressing Current Challenges in the Field of Metagenomics
    Gregory Vey · 2009 · Scholars Commons (Wilfrid Laurier University)
  25. Caracterização de cepas de Escherichia coli contendo diferentes alelos rpoS.
    Heloisa Galbiati · 2011
  26. Investigating Hfq-mRNA interactions in bacteria
    Martha Faner · 2013 · Human Biology
  27. Biogen interacts with target discovery
    Tim Fulmer · 2012 · Science-Business eXchange
  28. A functional blueprint of E. coli
    Allison J. Doerr · 2009 · Nature Methods
  29. Interactions between rank and sparsity in penalized estimation, and detection of structured objects
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  30. Interpreting the Regulatory Interplay in E. coli Metabolic Pathways
    Anália Maria Garcia Lourenço, Sónia Carneiro, José P. Pinto, Miguel Rocha, Eugénio Campos Ferreira, Isabel Rocha · 2011 · Advances in intelligent and soft computing
  31. in Escherichia coli under complex evolutionary scenarios 2
    Violeta Zorraquino, Semarhy Quiñones-Soto, Minseung Kim, Navneet Rai · 2014
  32. On the interconnection of stable protein complexes: inter-complex hubs and their conservation in Saccharomyces cerevisiae and Homo sapiens networks
    Concettina Guerra · 2015 · International Journal of Bioinformatics Research and Applications
  33. Identification of Chromatin-Binding Protein Complexes
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  34. A Combination of Protein-Protein Interaction Network Topological and Biological Process Features for Multiprotein Complex Detection
    Nazar Zaki, Elfadil Abdalla Mohamed · 2016 · Elsevier eBooks
  35. The Role of Elyc Protein in Protection Against Oxidative Stress in E. Coli Cells
    Khadidja Senouci‐Rezkallah · 2015 · IP International Journal of Medical Microbiology and Tropical Diseases
  36. Filtering and Interpreting Large-Scale Experimental Protein–Protein Interaction Data
    Gabriel A. Musso, Andrew Emili, Zhaolei Zhang · 2011 · Methods in molecular biology
  37. BASIC CONCEPTS IN THE MAMMALIAN GUT MICROBIOME Meta'omic Analytic Techniques for Studying the Intestinal Microbiome
    Xochitl C. Morgan, Curtis Huttenhower · 2014
  38. Protein-Protein Functional Linkage Predictions: Bringing Regulation to Context
    Anne Hahn, Vijaykumar Yogesh Muley · 2016 · CRC Press eBooks
  39. Cell-free Determination of Binary Complexes That Comprise Extended Protein-Protein Interaction Networks of Yersinia pestis
    Sarah L. Keasey, Mohan Natesan, Christine L. Pugh, Teddy Kamata, Stefan Wuchty, Robert G. Ulrich · 2016 · Molecular & Cellular Proteomics
  40. Incorporating Correlations among Gene Ontology Terms into Predicting Protein Functions
    Pingzhao Hu, Hui Jiang, Andrew Emili · 2013 · Bioinformatics
  41. Exploring the Bioactive Landscape of the Gut Microbiota to Identify Metabolites Underpinning Human Health
    Páraic Ó Cuív, Sriti Burman, Sian Pottenger, Mark Morrison · 2016 · Springer eBooks
  42. Mining into interspecific bacterial interactions
    Olaf Tyc · 2016
  43. Two‐Hybrid and Related Systems
    Neha Sakhawalkar, John Harry Caufield, Peter Uetz · 2017 · Encyclopedia of Life Sciences
  44. BACTERIAL CELL DIVISION IN-SIGHT: A SUPER-RESOLUTION STUDY OF THE ESCHERICHIA COLI DIVISOME
    Jackson A. Buss · 2013
  45. An Efficient Lentiviral-based Proteomics Approach Identifies Mitochondrial Complexes with Neurodegenerative Function
    Sandy Kassir · 2015
  46. Characterization of Metal-binding P-loop GTPases: E. coli YeiR and M. thermoacetica AcsF
    Jessica Andrea Flood-Garibay · 2011 · TSpace (University of Toronto)
  47. Escherichia coli responses to acid-stress : signal transduction and gene regulation
    Hrishiraj Sen · 2018 · University of Birmingham Institutional Research Archive (University of Birmingham)
  48. An Improved Prorank Algorithm for Detection of Overlapping Protein Complexes using Protein Interaction and Gene Expression Datasets in Yeast
    P. Manikandan, D. Ramyachitra · 2018 · IEEE/ACIS International Conference on Computer and Information Science (ICIS)
  49. Functional Genomics for Improving Gene Function Assessment in Bacteria
    Wenjun Shao · 2015 · eScholarship (California Digital Library)
  50. The Organization and Evolution of Biological Networks in Bacteria - Elucidating Biological Pathways and Complexes Involved in Bacterial Survival and Environmental Adaptation
    Cedoljub Bundalovic-Torma · 2018 · TSpace (University of Toronto)
  51. Functional Genomics in Yeast
    Maryam Hajikarimlou · 2020
  52. BIOCHEMICAL PROFILE-BASED COMPUTATIONAL INFERENCE OF PROTEIN COMPLEXES
    HU Zhong-ming · 2020 · TSpace (University of Toronto)
  53. Dynamics of Proteins and Macromolecular Machines in Escherichia coli
    Maxime Leroux, Nicolas Soubry, Rodrigo Reyes‐Lamothe · 2021 · EcoSal Plus
  54. Unwrapping Bacteria
    Kevin D. Young · 2014 · PLoS Genetics
  55. Quantitative Genetic Screens for Mapping Bacterial Pathways and Functional Networks
    Alla G. Gagarinova, Ali Hosseinnia, Mohan Babu · 2021 · Methods in molecular biology
  56. Prediction and Investigation of Novel Proteins in DNA Double Stranded Break Repair
    Mohsen Hooshyar · 2016
  57. Relações da estrutura de redes complexas com as dinâmicas do passeio aleatório, de transporte e de sincronização
    Lucas Antiqueira · 2012 · Digital Library of Theses and Dissertations (Universidade de São Paulo)
  58. Incorporating Correlations among Gene Ontology Terms into Predicting Protein Functions
    Pingzhao Hu, Hui Jiang, Andrew Emili · 2011 · IGI Global eBooks
  59. Chemical-genetic profiling to investigate cross-resistance and collateral sensitivity between antimicrobial peptides
    Pramod Kumar Jangir · 2020
  60. Faculty Opinions recommendation of Multiplexed gene synthesis in emulsions for exploring protein functional landscapes.
    Nobuhiko Tokuriki · 2019 · Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature
  61. Faculty Opinions recommendation of A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies.
    Dario Leister, Thilo Rühle · 2021 · Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature
  62. Identifying of protein complexes and functional modules in E.coli PPI networks
    Ping Kong, Wei Liu · 2020
  63. Protein–protein interaction network of E. coli K‐12 has significant high‐dimensional cavities: new insights from algebraic topological studies
    Xiaoyan Xue, Zhou Chen, Yue Hu, Dan Nie, Hui Zhao, Xinggang Mao · 2022 · FEBS Open Bio
  64. Developing a CHIP-SEQ pipeline to determine function of chromatin remodeling and transcription related complexes in a model organism
    Alejandro Saettone · 2022
  65. Environment and the Evolutionary Trajectory of Horizontal Gene Transfer
    Rama P. Bhatia, Hande Acar Kirit, Cecil M. Lewis, Krithivasan Sankaranarayanan, Jonathan P. Bollback · 2022 · Access Microbiology
  66. Developing a CHIP-SEQ pipeline to determine function of chromatin remodeling and transcription related complexes in a model organism
    Alejandro Saettone · 2022
  67. DeepsmirUD: Precise prediction of regulatory effects on miRNA expression mediated by small molecular compounds using competing deep learning frameworks
    Jianfeng Sun, Jinlong Ru, Zihao Chen, Fei Qi, Lorenzo Ramos‐Mucci, Suyuan Chen, Adam P. Cribbs, Li Deng, Xia Wang · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
  68. Assessing and Improving Protein-Protein Interaction Prediction in E. coli
    Eric Arezza · 2022
  69. Clade-wise alignment integration improves co-evolutionary signals for protein-protein interaction prediction
    Tao Fang, Damian Szklarczyk, Radja Hachilif, Christian von Mering · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
  70. Additional file 2 of Identification of protein complexes and functional modules in E. coli PPI networks
    Ping Kong, Huang, Gang, Wei Liu · 2020 · Figshare
  71. Additional file 1 of Identification of protein complexes and functional modules in E. coli PPI networks
    Ping Kong, Huang, Gang, Wei Liu · 2020 · Figshare
  72. Decoding Translational Control and Gene Expression
    Sara Takalloo · 2024 · Carleton University's Institutional Repository (MacOdrum Library, Carleton University)
  73. A statistical-based method for the construction and analysis of gene network: application to bacteria
    Zhiyuan Zhang, Guozhong Chen, Erguang Li · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
  74. Quantifying the Effects of Single Nucleotide Changes in the TATA Box of the Cauliflower Mosaic Virus 35S Promoter on Gene Expression in Arabidopsis thaliana
    Stephanie C. Amack · 2021
  75. MsyB-HU Interaction Modulates a Two-Tiered Bacterial Stress Response by Regulating DNA Supercoiling
    Huan Chen, Yanan Yang, Xinrui Chen, Haolong Zhou, Yingli He, Mengzhe Li, Wei Lin, Zuyi Yuan, Yawen Wang, Stephen Matthews et al. · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
  76. Exploiting network-based approaches for understanding gene regulation and function
    Sarath Chandra Janga · 2010 · Apollo (University of Cambridge)
  77. Additional file 3 of Experimental determination of evolutionary barriers to horizontal gene transfer
    Acar Kirit, Hande, Mato Lagator, Jonathan P. Bollback · 2020 · Figshare
  78. Ab initio Whole Cell Kinetic Model of Desulfovibrio desulfuricans L4 (ddsAAR26)
    Atoshi Abirami RajKumar, Cheryl Kai Ning Kang, Sragvi Verma, Diya Nanthakumarvani, Shafeeqa Abul-Hasan, Leesha Haarshiny Perumal, Maurice HT Ling · 2026 · Journal of Clinical Immunology & Microbiology
  79. Ab initio Whole Cell Kinetic Model of Streptomyces murinus CR-43 (smuLA26)
    Aguilar Normi Luisa Cinco, Pandiyan Srinithiksha, Sohnnakshee Murugesu · 2026 · Journal of Clinical Immunology & Microbiology
  80. Analyses et prédictions bioinformatiques de réseaux d'interactions protéine-protéines contextualisés
    Oussema Souiai · 2011 · theses.fr (ABES)
  81. Organisation moléculaire et réponse au stress de la voie de biosynthèse des phospholipides chez Esherichia coli
    Astrid Wahl · 2010
  82. Mécanismes et régulation d'une ARN hélicase essentielle chez E. coli : le facteur de terminaison de la transcription bactérienne Rho
    Makhlouf Rabhi · 2011
  83. Méthodes de classification de réseaux d'intéractions protéine-protéine et évaluations pour l'étude de la fonction
    Benoît Robisson · 2013 · theses.fr (ABES)
  84. Diversité et biosynthèse des lipides chez les palmiers
    Chloé Guerin · 2015 · theses.fr (ABES)
  85. Expanding the phenotypic and chemical space in Escherichia coli
    Carmen Lucia Herrera Dominguez · 2016
  86. Biogenèse des protéines à centre [Fe-S] et leur rôle dans la thiolation des ARNts
    Marine Lénon · 2023 · theses.fr (ABES)
  87. Enzymes de la voie de biosynthèse de novo des nucléotides puriques chez les bactéries : caractérisation et rôle physiologique
    Nour Ayoub · 2024 · theses.fr (ABES)
  88. Ab Initio Whole Cell Kinetic Model of Bifidobacterium breve DSM 20213 (bbrdPS26)
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  89. Prediction of Protein-Protein Interactions in Escherichia coli from Experimental Data in Treponema pallidum
    Marco Abreu · 2015 · VCU Scholars Compass (Virginia Commonwealth University)