Emili, Andrew

Expanded encyclopaedias of DNA elements in the human and mouse genomes

The ENCODE Project Consortium, Abascal, F., Acosta, R., Addleman, N. J., Adrian, J., Afzal, V., Ai, R., Aken, B., Akiyama, J. A., Jammal, O. A., et al. (2020) · Nature

Genomics and Chromatin DynamicsEpigenetics and DNA Methylation

Cited by 2,378

Enrichment Map: A Network-Based Method for Gene-Set Enrichment Visualization and Interpretation

Merico, D., Isserlin, R., Stueker, O., Emili, A., & Bader, G. D. (2010) · PLoS ONE

Bioinformatics and Genomic NetworksBiomedical Text Mining and Ontologies

Cited by 2,235

Quantifying E. coli Proteome and Transcriptome with Single-Molecule Sensitivity in Single Cells

Taniguchi, Y., Choi, P. J., Li, G.-W., Chen, H., Babu, M., Hearn, J., Emili, A., & Xie, X. S. (2010) · Science

Gene Regulatory Network AnalysisAdvanced Fluorescence Microscopy Techniques

Cited by 1,982

Nanoparticle Size and Surface Chemistry Determine Serum Protein Adsorption and Macrophage Uptake

Walkey, C. D., Olsen, J. B., Guo, H., Emili, A., & Chan, W. C. W. (2012) · Journal of the American Chemical Society

Nanoparticle-Based Drug DeliveryGold and Silver Nanoparticles Synthesis and Applications

Cited by 1,926

Interaction network containing conserved and essential protein complexes in Escherichia coli

Butland, G., Peregrín-Alvarez, J. M., Li, J., Yang, W., Yang, X., Canadien, V., Starostine, A., Richards, D., Beattie, B., Krogan, N., et al. (2005) · Nature

Bacterial Genetics and BiotechnologyAdvanced Proteomics Techniques and Applications

Cited by 1,201

Functional dissection of protein complexes involved in yeast chromosome biology using a genetic interaction map

Collins, S. R., Miller, K. M., Maas, N. L., Roguev, A., Fillingham, J., Chu, C. S., Schuldiner, M., Gebbia, M., Recht, J., Shales, M., et al. (2007) · Nature

Genomics and Chromatin DynamicsFungal and yeast genetics research

Cited by 869

Navigating the Chaperone Network: An Integrative Map of Physical and Genetic Interactions Mediated by the Hsp90 Chaperone

Zhao, R., Davey, M., Hsu, Y.-C., Kaplanek, P., Tong, A., Parsons, A. B., Krogan, N., Cagney, G., Mai, D., Greenblatt, J., et al. (2005) · Cell

Heat shock proteins researchFungal and yeast genetics research

Cited by 819

Global Survey of Organ and Organelle Protein Expression in Mouse: Combined Proteomic and Transcriptomic Profiling

Kislinger, T., Cox, B., Kannan, A., Chung, C., Hu, P., Ignatchenko, A., Scott, M. S., Gramolini, A. O., Morris, Q., Hallett, M. T., et al. (2006) · Cell

Advanced Proteomics Techniques and ApplicationsBioinformatics and Genomic Networks

Cited by 482

Global Functional Atlas of Escherichia coli Encompassing Previously Uncharacterized Proteins

Hu, P., Janga, S. C., Babu, M., Díaz-Mejía, J. J., Butland, G., Yang, W., Pogoutse, O., Guo, X., Phanse, S., Wong, P., et al. (2009) · PLoS Biology

Bioinformatics and Genomic NetworksBacterial Genetics and Biotechnology

Cited by 387

Tissue subcellular fractionation and protein extraction for use in mass-spectrometry-based proteomics

Cox, B., & Emili, A. (2006) · Nature Protocols

Advanced Proteomics Techniques and ApplicationsMass Spectrometry Techniques and Applications

Cited by 352

eSGA: E. coli synthetic genetic array analysis

Butland, G., Babu, M., Díaz-Mejía, J. J., Bohdana, F., Phanse, S., Gold, B., Yang, W., Li, J., Gagarinova, A. G., Pogoutse, O., et al. (2008) · Nature Methods

Bacterial Genetics and BiotechnologyMicrobial Metabolic Engineering and Bioproduction

Cited by 256

The binary protein-protein interaction landscape of Escherichia coli

Rajagopala, S. V., Sikorski, P., Kumar, A., Mosca, R., Vlasblom, J., Arnold, R., Franca-Koh, J., Pakala, S. B., Phanse, S., Ceol, A., et al. (2014) · Nature Biotechnology

Bioinformatics and Genomic NetworksBacterial Genetics and Biotechnology

Cited by 233

Protein-protein interaction networks: probing disease mechanisms using model systems

Kuzmanov, U., & Emili, A. (2013) · Genome Medicine

Bioinformatics and Genomic NetworksAdvanced Proteomics Techniques and Applications

Cited by 197

Multiparameter functional diversity of human C2H2 zinc finger proteins

Schmitges, F. W., Radovani, E., Najafabadi, H. S., Barazandeh, M., Campitelli, L. F., Yin, Y., Jolma, A., Zhong, G., Guo, H., Kanagalingam, T., et al. (2016) · Genome Research

Genomics and Chromatin DynamicsChromatin Remodeling and Cancer

Cited by 193

Interaction of tau with HNRNPA2B1 and N6-methyladenosine RNA mediates the progression of tauopathy

Jiang, L., Lin, W., Zhang, C., Ash, P. E. A., Verma, M., Kwan, J., van Vliet, E., Yang, Z., Cruz, A. L., Boudeau, S., et al. (2021) · Molecular Cell

Alzheimer's disease research and treatmentsDementia and Cognitive Impairment Research

Cited by 177

Hsc70 regulates accumulation of cyclin D1 and cyclin D1-dependent protein kinase

Diehl, J. A., Yang, W., Rimerman, R. A., Xiao, H., & Emili, A. (2003) · Molecular and Cellular Biology

Heat shock proteins researchCancer-related Molecular Pathways

Cited by 97

Pathway analysis of dilated cardiomyopathy using global proteomic profiling and enrichment maps

Isserlin, R., Merico, D., Alikhani‐Koupaei, R., Gramolini, A., Bader, G. D., & Emili, A. (2010) · PROTEOMICS

Bioinformatics and Genomic NetworksCardiomyopathy and Myosin Studies

Cited by 63

Global proteomic analyses define an environmentally contingent Hsp90 interactome and reveal chaperone-dependent regulation of stress granule proteins and the R2TP complex in a fungal pathogen

O’Meara, T. R., O’Meara, M. J., Polvi, E. J., Pourhaghighi, M. R., Liston, S. D., Lin, Z.-Y., Veri, A. O., Emili, A., Gingras, A.-C., & Cowen, L. E. (2019) · PLoS Biology

Heat shock proteins researchFungal and yeast genetics research

Cited by 49

Monomeric C‐reactive protein via endothelial CD31 for neurovascular inflammation in an ApoE genotype‐dependent pattern: A risk factor for Alzheimer’s disease?

Zhang, Z., Na, H., Gan, Q., Tao, Q., Alekseyev, Y., Hu, J., Yan, Z., Yang, J. B., Tian, H., Zhu, S., et al. (2021) · Aging Cell

Alzheimer's disease research and treatmentsBarrier Structure and Function Studies

Cited by 45

The influences of ApoE isoforms on endothelial adherens junctions and actin cytoskeleton responding to mCRP.

Zhang, Z., Lin, W., Gan, Q., Lei, M., Gong, B., Zhang, C., Henrique, J. S., Han, J., Tian, H., Tao, Q., et al. (2024) · Angiogenesis

Barrier Structure and Function StudiesAlzheimer's disease research and treatments

Cited by 10