Dimensionality and Dynamics in the Behavior of C. elegans
Stephens, Greg J., Johnson-Kerner, Bethany, Bialek, William, Ryu, William S.·2008·PLoS Computational Biology
Cited by (507)
Items 401–500 of 507
- Artificial Intelligence–Guided Behavioral Phenotyping in EpilepsyTilo Gschwind, Iván Soltész · 2024 · Oxford University Press eBooks
- A Primer on Quantitative ModelingIulia A. Neagu, Erel Levine · 2015 · Methods in molecular biology
- Optogenetics gets the wormAdriana San‐Miguel · 2021 · Science Robotics
- Replication and Knowledge Production in Empirical Software Engineering ResearchJonathan L. Krein · 2014 · ScholarsArchive (Brigham Young University)
- Harnessing behavioral diversity to understand circuits for cognitionSimon Musall, Anne E Urai, David Sussillo, Anne K. Churchland · 2019 · arXiv (Cornell University)
- Modeling the ballistic-to-diffusive transition in nematode motility reveals variation in exploratory behavior across speciesStephen J. Helms, W. Mathijs Rozemuller, Antonio Carlos Costa, Leon Avery, Greg J. Stephens, Thomas Simon Shimizu · 2015 · arXiv (Cornell University)
- Mapping the stereotyped behaviour of freely-moving fruit fliesGordon J Berman, Daniel M. Choi, William Bialek, Joshua W. Shaevitz · 2013 · arXiv (Cornell University)
- Mechanical Stretch Inhibition Sensitizes Proprioceptors to Compressive StressesRavi Das, Li-Chun Lin, Frederic Català-Castro, Nawaphat Malaiwong, Neus Sanfeliu, Montserrat Porta-de-la-Riva, Aleksandra Pidde, Michael Krieg · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
- Exploring the climate system through manifold learning.Fabrizio Falasca, Annalisa Bracco · 2021 · arXiv (Cornell University)
- Mapping the developmental structure of stereotyped and individual-unique behavioral spaces in C. elegansYuval Harel, Reemy Ali Nasser, Shay Stern · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
- Statistics of C. elegans turning behavior reveals optimality under biasing constraintsW. Mathijs Rozemuller, Steffen Werner, Antonio Carlos Costa, Liam O’Shaughnessy, Greg J. Stephens, Thomas Simon Shimizu · 2024 · eLife
- A complete account of the behavioral repertoire uncovers principles of larval zebrafish hunting behaviorYoav Rubinstein, Maayan Moshkovitz, Itay Ottenheimer, Sapir Shapira, Stas Tiomkin, Lilach Avitan · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
- Diverse prey capture strategies in teleost larvaeDuncan S Mearns, Sydney A Hunt, Martin Schneider, Ash V Parker, Manuel Stemmer, Herwig Baier · 2025 · eLife
- Unsupervised Representation Learning of C. elegans Poses and Behavior Sequences From Microscope Video RecordingsMaurice Deserno, Katarzyna Bożek · 2025 · eLife
- The evolution of embodied postural dynamics underlies behavioral diversity in benthic sessile chordateOleg O. Tolstenkov, Sissel Norland, Marios Chatzigeorgiou · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
- A dataset of fine-grained zebrafish interactions in health and diseaseKosmas Deligkaris, Radmila Neiman, Makoto Hiroi, Tatsuo Izawa, Liam O’Shaughnessy, Luis Carretero, Ichiro Masai, Greg J. Stephens · 2026 · Scientific Data
- On the net displacement of contact surface centroid in contractile bodiesJosé J. Muñoz, Lucie Condamin, David Doste · 2021 · Mechanics Research Communications
- The head leads the body: a curvature-based kinematic description of C. elegansVenkat Padmanabhan, Zeina S. Khan, Solomon, Deepak E., Armstrong, Andrew, Kendra P. Rumbaugh, Siva A. Vanapalli, Jerzy Bławzdziewicz · 2012 · arXiv (Cornell University)
- The medial reticular formation: a brainstem substrate for simple action selection?Mark D. Humphries, KEVIN N. GURNEY, Tony J. Prescott · 2011 · Cambridge University Press eBooks
- Single cell neuro-sensory dynamics: Ca2+chemoreceptor-guided sea urchin sperm motilityJ. Nathan Kutz, Lisa Burton, Yasmeen H. Hussain, Jeff Riffell, Jeffrey Guasto, Roman Stocker, Anette E. Hosoi · 2013 · BMC Neuroscience
- Animal Behavior: The Truman Show for AntsJonathan Saragosti, Daniel J. C. Kronauer · 2013 · Current Biology
- Monitoring Movement Behaviour of Caenorhabditis elegans in Response to Formaldehyde at Low ConcentrationsMd. Golam Mortuza, Changwei Ji, Fahad A. Al-Misned, Tae‐Soo Chon · 2013 · Pakistan Journal of Zoology
- Numerical Investigation of Low Reynolds LocomotionErasmus Mundus Master Thesis · 2013
- QUANTITATIVE PHENOTYPING OF C.ELEGANS BEHAVIOR IN AN AUTOMATED MICROSYSTEMGina H. Cremona, Jeffrey N. Stirman, Hang Lu · 2008
- Point-set manifold processing for computational mechanics: thin shells, reduced order modeling, cell motility and molecular conformationsDaniel Millán · 2012
- Functional Circuitry Controlling the Selection of Behavioral Primitives in Caenorhabditis elegansTheodore H. Lindsay · 2012 · ProQuest Demo Repository
- Distributed Control of Sex Differences in the Locomotor Behavior of Caenorhabditis elegansWilliam R. Mowrey, Douglas Portman · 2010 · UR Research (University of Rochester)
- Behavioral aspects of neuronal control in the foregut of the two brachyuran crab species Cancer pagurus and Cancer borealisDiehl, Florian · 2012 · OPen Access Repositorium der Universität Ulm (OPARU) (Ulm University)
- Automated behavioural fingerprinting of Caenorhabditis elegans mutantsAndré EX Brown, William R Schafer · 2015 · Cambridge University Press eBooks
- A Formal Approach to the Automatic Generation of Ballet MotionsAmy LaViers, Yushan Chen, Calin A. Belta, Magnus Egerstedt · 2011 · SMARTech Repository (Georgia Institute of Technology)
- Quantifying the locomotion of C. elegans and their response to photo stimulationIan A. Seddon · 2016
- Sampling the movement phenospace: Towards a biophysics of behavior in the wiggling of C. elegans.Greg J. Stephens · 2014
- Direct Measurements of Drag Forces on a MicrocrawlerYegor Rabets · 2014 · TSpace (University of Toronto)
- Expressivity in Natural and Artificial SystemsAmy LaViers · 2018 · arXiv (Cornell University)
- Fast fluorescence lifetime imaging reveals the aggregation processes of α-synuclein and polyglutamine in aging Caenorhabditis elegansRomain F. Laine, Tessa Sinnige, Kai Yu Ma, Amanda J. Haack, Chetan Poudel, Peter Gaida, Nathan Curry, Michele Perni, Ellen A. A. Nollen, Christopher Martin Dobson et al. · 2018 · bioRxiv (Cold Spring Harbor Laboratory)
- A Framework for Understanding Small Nervous SystemsJeffrey B. Lee · 2017 · Digital Access to Scholarship at Harvard (DASH) (Harvard University)
- Digging Deeper: Methodologies for High-Content Phenotyping and Knowledge-Abstraction in C. elegansNan Xu, Dhaval S Patel, Hang Lu · 2019 · arXiv (Cornell University)
- Automated, predictive, and interpretable inference of C. elegans escape dynamicsBryan C. Daniels, William S. Ryu, Ilya M. Nemenman · 2018 · bioRxiv (Cold Spring Harbor Laboratory)
- Screening by changes in stereotypical behavior during cell motilityLuke Tweedy, Patrick Witzel, Doris Heinrich, Robert H. Insall, Robert G. Endres · 2019 · arXiv (Cornell University)
- Deep phenotyping in C. elegansNan Xu · 2019 · arXiv (Cornell University)
- Light-powered reactivation of flagella and contraction of microtubules network: towards building an artificial cellRaheel Ahmad, Christin Kleineberg, Vahid Nasirimarekani, Yu-Jung Su, Samira Goli Pozveh, Albert Johann Bae, Kai Sundmacher, Eberhard Bodenschatz, Isabella Guido, Tanja R. Vidaković-Koch et al. · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
- Functional Analysis of the Motor Circuit of Juvenile Caenorhabditis elegansYangning Lu · 2020 · TSpace (University of Toronto)
- On the net displacement of contractile elastic bodies subjected to surface frictionJosé J. Muñoz, Lucie Condamin, David Doste · 2020 · arXiv (Cornell University)
- A visual tracking system for honeybee 3D flight trajectory reconstruction and analysisCong Sun · 2021 · Research Explorer (The University of Manchester)
- Progress on Computational EthologyWei Ren, Shan Ping Yu, Yongqing Zhang · 2021 · Chinese Science Bulletin (Chinese Version)
- Optogenetic analyses of neuronal network function and synaptic transmission in Caenorhabditis elegansALEXANDER R. GOTTSCHALK · 2014 · e-Neuroforum
- The analysis of body shape and application in Caenorhabditis elegans behavior and state classificationNing Li, Weiyang Chen · 2022 · Research Square
- A taste for numbers: Caenorhabditis elegans foraging follows a low-dimensional rule of thumbGabriel Madirolas, Alid Al‐Asmar, Lydia Gaouar, Leslie Marie-Louise, Andrea Garza-Enríquez, Mikail Khona, Christoph Ratzke, Jeff Gore, Alfonso Pérez‐Escudero · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
- Toxic Effect of Benzene, Toluene and Formaldehyde to Response Behavior of Nematode (Caenorhabditis elegans) using Image Processing SystemM. Golam Mortuza, Fahad A. Al-Misned · 2014 · Arab Gulf Journal of Scientific Research
- Symmetry and Network Topology in Neuronal Circuits: Complicity of Form and FunctionIan Nicholas Stewart · 2022 · International Journal of Bifurcation and Chaos
- C. elegans behaviour and brain dynamics; a physical explorationWillem Mathijs Rozemuller · 2023
- Neuropeptidergic regulation of locomotion inhibition in C. elegansPetrus Van der Auwera · 2023 · Publication Server of Goethe University Frankfurt am Main (Goethe University Frankfurt)
- Using the Model Organism Caenorhabditis elegans to Explore Neuromuscular FunctionSamantha Hughes, Nathaniel J. Szewczyk · 2023 · Neuromethods
- Weakly electric fishesMary Upshall · 2023 · Elsevier eBooks
- Complexity reduction by symmetry: uncovering the minimal regulatory network for logical computation in bacteria.Luis A. Álvarez-García, Wolfram Liebermeister, Ian Leifer, Hernán A. Makse · 2025 · PubMed
- The coexistence of localized and distributed behavioral information in neural activityGaurang Yadav, Bryan C. Daniels · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
- Prediction of the Caenorhabditis elegans body posture and strainsWeiyang Chen, Ning Li · 2023 · IEEE International Conference on Bioinformatics and Biomedicine (BIBM)
- Neuromechanical Phase Lags and Gait Adaptation in the Nematode C. elegansChristopher J. Pierce, Yang Ding, Baxi Chong, Hang Lu, Daniel I. Goldman · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
- eLife Assessment: Diverse prey capture strategies in teleost larvaeVatsala Thirumalai · 2024 · eLife
- Reviewer #3 (Public Review): Diverse prey capture strategies in teleost larvaeDuncan S Mearns, Sydney A Hunt, Martin W Schneider · 2024 · eLife
- Reviewer #1 (Public Review): Diverse prey capture strategies in teleost larvaeDuncan S Mearns, Sydney A Hunt, Martin W Schneider · 2024 · eLife
- Reviewer #2 (Public Review): Diverse prey capture strategies in teleost larvaeDuncan S Mearns, Sydney A Hunt, Martin W Schneider · 2024 · eLife
- Reviewer #1 (Public Review): Statistics of C. elegans turning behavior reveals optimality under biasing constraintsW. Mathijs Rozemuller, Steffen Werner, Antonio Carlos Costa · 2024 · eLife
- Reviewer #2 (Public Review): Statistics of C. elegans turning behavior reveals optimality under biasing constraintsW. Mathijs Rozemuller, Steffen Werner, Antonio Carlos Costa · 2024 · eLife
- Statistics of C. elegans turning behavior reveals optimality under biasing constraintsW. Mathijs Rozemuller, Steffen Werner, Antonio Carlos Costa, Liam O’Shaughnessy, Greg J. Stephens, Thomas Simon Shimizu · 2024 · eLife
- eLife Assessment: Statistics of C. elegans turning behavior reveals optimality under biasing constraintsAgnese Seminara · 2024 · eLife
- Muscular expression of pezo-1 differentially contributes to swimming and crawling production in the nematode C. elegans.Adina Fazyl, Erin Sawilchik, Wolfgang Stein, Andres Gabriel Vidal-Gadea · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
- Complexity reduction by symmetry: Uncovering the minimal regulatory network for logical computation in bacteriaLuis A. Álvarez-García, Wolfram Liebermeister, Ian Leifer, Hernán A. Makse · 2025 · PLoS Computational Biology
- Computational analyses of dynamic visual displays reveal diet-dependent male signalling in Rabidosa rabida wolf spidersNoori Choi, Dustin J. Wilgers, Eileen A. Hebets · 2025 · Animal Behaviour
- Structural Equation Modeling of Sustainability Performance, Partnerships, and Leadership to the Global University RankingsBenedict Enajada Candia · 2025 · SSRN Electronic Journal
- The First of Us: Ophiocordyceps use a novel scramblase-binding peptide to manipulate zombie antsWilliam C. Beckerson, Steffen Werner, Maite Goebbels, João Jacob Ramalho, Andrew J. M. Swafford, Ilia Soroka, Sinah T Wingert, Mike Boxem, Suzan Ruijtenberg, Greg J. Stephens et al. · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
- Deep-Pose-Tracker: an automated behavioural analysis framework for Caenorhabditis elegansDebasish Saha, Shivam Chaudhary, Dhyey Vyas, Anindya Ghosh‐Roy, Rati Ram SHARMA · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
- Behavioral ontogeny in a pelagic tunicate reveals the deep origins of chordate behavioral developmental plasticityOleg O. Tolstenkov, Rodolfo Baldinotti, Sissel Norland, Anne Aasjord, Daniel M. Chourrout, Marios Chatzigeorgiou · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
- Additional file 5 of Thermal modulation of Zebrafish exploratory statistics reveals constraints on individual behavioral variabilityGuillaume Le Goc, Julie Lafaye, Sophia Karpenko, Volker Bormuth, Raphaël Candelier, Georges Debrégeas · 2021 · Figshare
- Additional file 4 of Thermal modulation of Zebrafish exploratory statistics reveals constraints on individual behavioral variabilityGuillaume Le Goc, Julie Lafaye, Sophia Karpenko, Volker Bormuth, Raphaël Candelier, Georges Debrégeas · 2021 · Figshare
- Additional file 2 of Thermal modulation of Zebrafish exploratory statistics reveals constraints on individual behavioral variabilityGuillaume Le Goc, Julie Lafaye, Sophia Karpenko, Volker Bormuth, Raphaël Candelier, Georges Debrégeas · 2021 · Figshare
- Additional file 3 of Thermal modulation of Zebrafish exploratory statistics reveals constraints on individual behavioral variabilityGuillaume Le Goc, Julie Lafaye, Sophia Karpenko, Volker Bormuth, Raphaël Candelier, Georges Debrégeas · 2021 · Figshare
- Additional file 1 of Long-term imaging reveals behavioral plasticity during C. elegans dauer exitFriedrich Preußer, Anika Neuschulz, Jan Philipp Junker, Nikolaus Rajewsky, Stephan Preibisch · 2023 · Figshare
- Additional file 1 of Thermal modulation of Zebrafish exploratory statistics reveals constraints on individual behavioral variabilityGuillaume Le Goc, Julie Lafaye, Sophia Karpenko, Volker Bormuth, Raphaël Candelier, Georges Debrégeas · 2021 · Figshare
- Additional file 1 of Small molecule inhibitors of α-synuclein oligomers identified by targeting early dopamine-mediated motor impairment in C. elegansKevin S. Chen, Krystal S Menezes, Rodgers, Jarlath B., Darren M. O’Hara, Nhat Anh Tran, Kazuko Fujisawa, Seiya Ishikura, Khodaei, Shahin, Hien Chau, Anna Cranston et al. · 2021 · Figshare
- Additional file 6 of Thermal modulation of Zebrafish exploratory statistics reveals constraints on individual behavioral variabilityGuillaume Le Goc, Julie Lafaye, Sophia Karpenko, Volker Bormuth, Raphaël Candelier, Georges Debrégeas · 2021 · Figshare
- OnlinePCA.jl: A Julia Package for Out-of-core and Sparse Principal Component AnalysisKoki Tsuyuzaki · 2026 · The Journal of Open Source Software
- Social interactions in medaka fish depend on discrete kinematic states of swimming behaviorRoy Harpaz, Pedro Piquet Carneiro, Yasuko Isoe, Mark C. Fishman, Florian Engert · 2026 · Current Biology
- Visuomotor coordination on the road: low-dimensional representations reveal adaptive, context-dependent reductions in the dimensionality of natural driving behaviorJohn Madrid-Carvajal, Shadi Derakhshan, Peter König B · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
- Neural sensing of surface mechanics modulates proprioceptive activity and locomotion in Caenorhabditis elegansAleksandra Pidde, Montserrat Porta-de-la-Riva, Costanza Agazzi, Carmen Martínez-Fernández, Al-ice Lorrach, Ashutosh Bijalwan, Neus Sanfeliu-Cerdán, Alba Calatayud-Sanchez, Eric Torralba-Sales, Ravi Das et al. · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
- Unifying theories in high-dimensional biophysics: approaches, challenges and opportunitiesMarianne Bauer, Akshit Goyal, Sidhartha Goyal, Gautam Reddy, Shaon Chakrabarti, Michael M. Desai, William Gilpin, Jacopo Grilli, Kabir B. Husain, Sanjay Jain et al. · 2026 · npj Systems Biology and Applications
- Neuronal populations underlying locomotion in zebrafishJenna R. Sternberg · 2016 · theses.fr (ABES)
- Light-seeking navigation in zebrafish larva : from behavior to neural circuitsSophia Karpenko · 2020 · theses.fr (ABES)
- Homeostatic adaptations during sustained levamisole-induced muscle depolarization in Caenorhabditis elegansFranklin Florin · 2022 · theses.fr (ABES)
- Inference and modeling of biological networks : from active matter to the immune systemVictor Chardès · 2022 · theses.fr (ABES)
- Mid-superior temporal sulcus encodes spatial context and behavioral state in freely moving macaquesFelipe Parodi, Alessandro P. Lamacchia, Yufan Ye, Pooya Laamerad, Yiting Chen, Kristin L. Gardiner, Sébastien Tremblay, Konrad Paul Kording, Michael L. Platt · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
- Worm-PostureNet: An integrated deep learning framework for high-throughput pose estimation and behavioral profiling in Caenorhabditis elegansXiaoke Liu, Boao Li, Jing Huo, Wenjie Teng, Xiaoqing Han, Jianming Liu · 2026 · Results in Engineering
- MOSAIC: a longitudinal phenotypic clock to dissect organismal aging trajectories in C. elegansAlexandre Pierre Vaudano, Marie Pierron, L. Stojkovic, Mathieu Membrez, Morgane Bourgeois, Christopher Neal, Myriam Chimen, Lina Verbakel, Matteo Cornaglia, Florence Solari et al. · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
- Using timescale as a state coordinate reveals the metastable geometry of behaviorRajpreet Kaur, Kanishk Jain, Gordon J Berman · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
- Dynamic Morphospaces for Animal Locomotion: A Case Study in Bird FlightLydia A. France, Christina Harvey, Graham Keith Taylor · 2026 · Integrative and Comparative Biology
- Generating whole-brain neural activity and behavior through unified latent dynamicsDavide Nuzzi, Maurizio Mattia, Giovanni Pezzulo · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
- Estimating the amount of computation done by a brain using population neural activityJunang Li, Yuzheng Lin, Anuj Kumar Sharma, Andrew M. Leifer, David H. Wolpert · 2026 · Proceedings of the National Academy of Sciences
- Numerical simulation of worm-like soft robot locomotionJosé J. Muñoz, Ashutosh Bijalwan · 2025 · Advances in Robotics - International Conference of The Robotics Society (AIR)
- Trend segmentation of integer-valued time series via branch length similarity entropy profilesSang‐Hee Lee, Cheol-Min Park, Youngjoo An · 2026 · Physica A Statistical Mechanics and its Applications
- Mechanosensory encoding of surface mechanics optimizes locomotionAleksandra Pidde, Montserrat Porta-de-la-Riva, Costanza Agazzi, Carmen Martínez-Fernández, Alice Lorrach, Ashutosh Bijalwan, Neus Sanfeliu-Cerdán, Alba Calatayud-Sanchez, Eric Torralba-Sales, Ravi Das et al. · 2026 · Nature Communications