“Guilt by Association” Is the Exception Rather Than the Rule in Gene Networks

Cited by (216)

Items 201–216 of 216

1. Additional file 1 of Network-based analysis of virulence factors for uncovering Aeromonas veronii pathogenesis
   Hong Li, Xiang Ma, Yanqiong Tang, Dan Wang, Ziding Zhang, Zhu Liu · 2021 · Figshare
2. Additional file 3 of Network-based analysis of virulence factors for uncovering Aeromonas veronii pathogenesis
   Hong Li, Xiang Ma, Yanqiong Tang, Dan Wang, Ziding Zhang, Zhu Liu · 2021 · Figshare
3. Utilizing RNA-seq data in monotone iterative generalized linear model to elevate prior knowledge quality of the circRNA-miRNA-mRNA regulatory axis
   Alikhan Anuarbekov, Jǐŕı Kléma · 2025 · BMC Bioinformatics
4. GhostBuster: A Deep-Learning-based, Literature-Unbiased Gene Prioritization Tool for Gene Annotation Prediction
   Giulio Deangeli, Maria Grazia Spillantini, Píetro Lió · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
5. Phase Separation Contributes to Pathogenicity for Nonsense Mediated Decay-Escaping Variant Alleles
   Jiaoyang Xu, Jacob Schmidt, Amy Campbell, Tugce Bozkurt‐Yozgatli, Iman Egab, Luisa Mestroni, Matthew Taylor, Jennifer Ellen Posey, Richard A. Gibbs, Eric Boerwinkle et al. · 2025 · medRxiv
6. Additional file 1 of Identification and characterization of proteins of unknown function (PUFs) in Clostridium thermocellum DSM 1313 strains as potential genetic engineering targets
   Poudel, Suresh, Cope, Alexander L., Kaela B. O’Dell, Adam M. Guss, Hyeongmin Seo, Cong T. Trinh, Hettich, Robert L. · 2021 · Figshare
7. Additional file 3 of Deciphering the mode of action and position of genetic variants impacting on egg number in broiler breeders
   Ειρήνη Ταρσάνη, Andreas Kranis, Gerasimos Maniatis, Santiago Avendaño, Ariadne Loukia Hager-Theodorides, Antonios P. Kominakis · 2020 · Figshare
8. Additional file 4 of Deciphering the mode of action and position of genetic variants impacting on egg number in broiler breeders
   Ειρήνη Ταρσάνη, Andreas Kranis, Gerasimos Maniatis, Santiago Avendaño, Ariadne Loukia Hager-Theodorides, Antonios P. Kominakis · 2020 · Figshare
9. Additional file 9 of Identification and characterization of proteins of unknown function (PUFs) in Clostridium thermocellum DSM 1313 strains as potential genetic engineering targets
   Suresh Poudel, Cope, Alexander L., Kaela B. O’Dell, Adam M. Guss, Hyeongmin Seo, Cong T. Trinh, Hettich, Robert L. · 2021 · Figshare
10. Gene expression inference from cell-free DNA using uncertainty-aware deep learning
    Robert D. Patton, A. Patrick McDeed, Alexander Netzley, Aditya Pawar, Thomas W. Persse, Akira Nair, Patricia C. Galipeau, Ilsa M. Coleman, Pushpa Itagi, Pooja Chandra et al. · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
11. Exploratory transcriptomic and network-based analysis of methylmercury exposure in human neuronal developmental models using GEO datasets and toxicogenomic resources
    Danna Gomez-Caballero, Jesus Olivero‐Verbel · 2026 · NeuroToxicology
12. A map of human protein-protein interaction embeddings for functional discovery
    Mert Cihan, Ute Distler, Miguel Angel Andrade-Navarro · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
13. Degree-ranked gene lists omit the cross-module connectors, and a partition-free centrality recovers them
    Qun Zhao, Huaizheng Zheng, Yuxin Zhang, Jieying Bi, Tan Sun · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
14. Gene function prediction from bulk coexpression is bounded by cell-type-level signal
    Alexander Adrian-Hamazaki, Paul Pavlidis · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
15. Graph-based representations in modern protein science
    Dana S. Matthews, Sacha B. Pulsford, Anthony Brancewicz, John Z. Chen, Barnabas Gall, Mahakaran Sandhu, Matthew A. Spence, Colin J. Jackson · 2026 · Biochemical Journal
16. GSNetAct: Task-aware network weighting for single-cell gene-set activity scoring
    Zeynep Garan, Yasin Kaymaz · 2026 · Current Genomics