Gillis, Jesse

Comparative cellular analysis of motor cortex in human, marmoset and mouse

Bakken, T. E., Jorstad, N. L., Hu, Q., Lake, B. B., Tian, W., Kalmbach, B. E., Crow, M., Hodge, R. D., Krienen, F. M., Sorensen, S. A., et al. (2021) · Nature

Single-cell and spatial transcriptomicsNeuroscience and Neuropharmacology Research

Cited by 812

Evolution of cellular diversity in primary motor cortex of human, marmoset monkey, and mouse

Bakken, T. E., Jorstad, N. L., Hu, Q., Lake, B. B., Tian, W., Kalmbach, B. E., Crow, M., Hodge, R. D., Krienen, F. M., Sorensen, S. A., et al. (2020) · Nature

Single-cell and spatial transcriptomicsNeuroscience and Neuropharmacology Research

Cited by 809

A multimodal cell census and atlas of the mammalian primary motor cortex

BRAIN Initiative Cell Census Network (BICCN), BRAIN Initiative Cell Census Network (BICCN) Corresponding authors, Callaway, E. M., Dong, H.-W., Ecker, J. R., Hawrylycz, M. J., Huang, Z. J., Lein, E. S., Ngai, J., Osten, P., et al. (2021) · Nature

Single-cell and spatial transcriptomicsGenomics and Chromatin Dynamics

Cited by 522

Transcriptional Architecture of Synaptic Communication Delineates GABAergic Neuron Identity

Paul, A., Crow, M., Raudales, R., He, M., Gillis, J., & Huang, Z. J. (2017) · Cell

Single-cell and spatial transcriptomicsNeuroscience and Neuropharmacology Research

Cited by 421

A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex

Yao, Z., Liu, H., Xie, F., Fischer, S., Adkins, R. S., Aldridge, A. I., Ament, S. A., Bartlett, A., Behrens, M. M., Van den Berge, K., et al. (2021) · Nature

Single-cell and spatial transcriptomicsGenomics and Chromatin Dynamics

Cited by 398

An integrated transcriptomic and epigenomic atlas of mouse primary motor cortex cell types

Yao, Z., Liu, H., Xie, F., Fischer, S., Booeshaghi, A. S., Adkins, R. S., Aldridge, A. I., Ament, S. A., Pinto-Duarte, A., Bartlett, A., et al. (2020) · Nature

Single-cell and spatial transcriptomicsGenomics and Chromatin Dynamics

Cited by 397

Characterizing the replicability of cell types defined by single cell RNA-sequencing data using MetaNeighbor

Crow, M., Paul, A., Ballouz, S., Huang, Z. J., & Gillis, J. (2018) · Nature Communications

Single-cell and spatial transcriptomicsGene expression and cancer classification

Cited by 365

Cellular Anatomy of the Mouse Primary Motor Cortex

Muñoz-Castañeda, R., Zingg, B., Matho, K. S., Wang, Q., Chen, X., Foster, N. N., Narasimhan, A., Li, A., Hirokawa, K. E., Huo, B., et al. (2020) · Nature

Single-cell and spatial transcriptomicsNeuroscience and Neuropharmacology Research

Cited by 270

Guidance for RNA-seq co-expression network construction and analysis: safety in numbers

Ballouz, S., Verleyen, W., & Gillis, J. (2015) · Bioinformatics

Bioinformatics and Genomic NetworksGene expression and cancer classification

Cited by 215

“Guilt by Association” Is the Exception Rather Than the Rule in Gene Networks

Gillis, J., & Pavlidis, P. (2012) · PLoS Computational Biology

Bioinformatics and Genomic NetworksGene Regulatory Network Analysis

Cited by 214

Comparative transcriptomics reveals human-specific cortical features

Jorstad, N. L., Song, J. H. T., Exposito-Alonso, D., Suresh, H., Castro-Pacheco, N., Krienen, F. M., Yanny, A. M., Close, J., Gelfand, E., Long, B., et al. (2023) · Science

Single-cell and spatial transcriptomicsNeurogenesis and neuroplasticity mechanisms

Cited by 208

Predictability of human differential gene expression

Crow, M., Lim, N., Ballouz, S., Pavlidis, P., & Gillis, J. (2019) · Proceedings of the National Academy of Sciences

Gene expression and cancer classificationBioinformatics and Genomic Networks

Cited by 117

Exploiting single-cell expression to characterize co-expression replicability

Crow, M., Paul, A., Ballouz, S., Huang, Z. J., & Gillis, J. (2016) · Genome Biology

Bioinformatics and Genomic NetworksSingle-cell and spatial transcriptomics

Cited by 76

EGAD: ultra-fast functional analysis of gene networks

Ballouz, S., Weber, M., Pavlidis, P., & Gillis, J. (2017) · Bioinformatics

Bioinformatics and Genomic NetworksGene Regulatory Network Analysis

Cited by 74

Meta-analysis of gene coexpression networks in the post-mortem prefrontal cortex of patients with schizophrenia and unaffected controls

Mistry, M., Gillis, J., & Pavlidis, P. (2013) · BMC Neuroscience

Schizophrenia research and treatmentBioinformatics and Genomic Networks

Cited by 59

Conserved cell‐type specific signature of resilience to Alzheimer’s disease nominates role for excitatory cortical neurons

Telpoukhovskaia, M., Hadad, N., Gurdon, B., Dai, M., Ouellette, A. R., Neuner, S., Dunn, A. R., Hansen, S. L., Wu, Y., Dumitrescu, L., et al. (2022) · Alzheimer's & Dementia

Alzheimer's disease research and treatmentsDementia and Cognitive Impairment Research

Cited by 4