BEAST 2: A Software Platform for Bayesian Evolutionary Analysis

Cited by (1,007)

Items 701–800 of 1,007

1. Recent advances in computational phylodynamics
   Guy Baele, Simon Dellicour, Marc A. Suchard, Philippe Lemey, Bram Vrancken · 2018 · Current Opinion in Virology
2. New microhylid frog genus from Peninsular India with Southeast Asian affinity suggests multiple Cenozoic biotic exchanges between India and Eurasia
   Sonali Garg, S. D. Biju · 2019 · Scientific Reports
3. The Effect of Fossil Sampling on the Estimation of Divergence Times with the Fossilized Birth–Death Process
   Joseph E O’Reilly, Philip C. J. Donoghue · 2019 · Systematic Biology
4. Phylogenomics of Piranhas and Pacus (Serrasalmidae) Uncovers How Dietary Convergence and Parallelism Obfuscate Traditional Morphological Taxonomy
   Matthew A. Kolmann, Lily C. Hughes, Luz Patricia Hernandez, Dahiana Arcila, Ricardo Betancur‐R, Mark Henry Sabaj, Hernán López‐Fernández, Guillermo Ortı́ · 2020 · Systematic Biology
5. Phylogeny, Diversification Rate, and Divergence Time of Agave sensu lato (Asparagaceae), a Group of Recent Origin in the Process of Diversification
   Ofelia Jiménez-Barrón, Ricardo García-Sandoval, Susana Magallón, Abisaí García-Mendoza, Jorge Nieto‐Sotelo, Erika Aguirre‐Planter, Luis E. Eguiarte · 2020 · Frontiers in Plant Science
6. Single-cell copy number calling and event history reconstruction
   Jack Kuipers, Anıl Tuncel, Pedro Ferreira, Katharina Jahn, Niko Beerenwinkel · 2025 · Bioinformatics
7. Unique genome organization of non-mammalian papillomaviruses provides insights into the evolution of viral early proteins
   Koenraad Van Doorslaer, Valéria Ruoppolo, Annie E. Schmidt, Amélie Lescroël, Dennis Jongsomjit, Megan L. Elrod, Simona J. Kraberger, Daisy Stainton, Katie M. Dugger, Grant Ballard et al. · 2017 · Virus Evolution
8. Phase Transition in the Recoverability of Network History
   Jean-Gabriel Young, Guillaume St-Onge, Edward Laurence, Charles Murphy, Laurent Hébert-Dufresne, Patrick Desrosiers · 2019 · Physical Review X
9. Integrative taxonomy uncovers hidden species diversity in the rheophilic genus Potamometra (Hemiptera: Gerridae)
   Chenguang Zheng, Zhen Ye, Xiuxiu Zhu, Haiguang Zhang, Xue Dong, Pingping Chen, Wenjun Bu · 2019 · Zoologica Scripta
10. Inferring Mycobacterium bovis transmission between cattle and badgers using isolates from the Randomised Badger Culling Trial
    Andries J. van Tonder, Mark Thornton, Andrew J. K. Conlan, Keith A. Jolley, Lee Goolding, A.P. Mitchell, James Dale, Eleftheria Palkopoulou, Philip J. Hogarth, R. Glyn Hewinson et al. · 2021 · PLoS Pathogens
11. SARS-CoV-2 transmission dynamics in Belarus in 2020 revealed by genomic and incidence data analysis
    Alina Nemira, Ayotomiwa Ezekiel Adeniyi, Гасич Елена Леонидовна, Kirill Y. Bulda, Leonid N. Valentovich, A. G. Kras’ko, Olga Glebova, Alexander Kirpich, Pavel Skums · 2021 · Communications Medicine
12. Phylogenomic analysis of Syngnathidae reveals novel relationships, origins of endemic diversity and variable diversification rates
    Josefin Stiller, Graham Short, Healy Hamilton, Norah P. Saarman, Sarah J. Longo, Peter C. Wainwright, Greg W. Rouse, Warren Brian Simison · 2022 · BMC Biology
13. Updated systematics of Trichaptum s.l. (Hymenochaetales, Basidiomycota)
    Meng Zhou, YC Dai, Josef Vlasák, HG Liu, Yuan Yuan · 2023 · Mycosphere
14. Phylogeography of the narrow-headed vole Lasiopodomys (Stenocranius ) gregalis (Cricetidae, Rodentia) inferred from mitochondrial cytochrome b sequences: an echo of Pleistocene prosperity
    Tatyana V. Petrova, Evgeny S. Zakharov, Ravchig Samiya, N. I. Abramson · 2014 · Journal of Zoological Systematics & Evolutionary Research
15. Multilocus evidence for globally distributed cryptic species and distinct populations across ocean gyres in a mesopelagic copepod
    Kimberly R. Andrews, Emily Norton, Iria Fernández-Silva, Elan J. Portner, Erica Goetze · 2014 · Molecular Ecology
16. Uncovering missing pieces: duplication and deletion history of arrestins in deuterostomes
    Henrike Indrischek, Sonja J. Prohaska, Vsevolod V. Gurevich, Eugenia V. Gurevich, Peter Florian Stadler · 2017 · BMC Evolutionary Biology
17. Rapid allopolyploid radiation of moonwort ferns (Botrychium; Ophioglossaceae) revealed by PacBio sequencing of homologous and homeologous nuclear regions
    Benjamin Dauphin, Jason R. Grant, Donald R. Farrar, Carl J. Rothfels · 2017 · Molecular Phylogenetics and Evolution
18. Ancient connections among the European rivers and watersheds revealed from the evolutionary history of the genus Telestes (Actinopterygii; Cypriniformes)
    Ivana Buj, Zoran Marčić, Marko Ćaleta, Radek Šanda, Matthias F. Geiger, Jörg Freyhof, Annie Machordom, Jasna Vukić · 2017 · PLoS ONE
19. Phylogenetic approach to recover integration dates of latent HIV sequences within-host
    Bradley R. Jones, Natalie N. Kinloch, J. Horacsek, Bruce Ganase, Marianne Harris, P. Richard Harrigan, Richard Brad Jones, Mark A. Brockman, Jeffrey B. Joy, Art F. Y. Poon et al. · 2018 · Proceedings of the National Academy of Sciences
20. Multiple connections between Amazonia and Atlantic Forest shaped the phylogenetic and morphological diversity of Chiasmocleis Mehely, 1904 (Anura: Microhylidae: Gastrophryninae)
    Rafael O. de Sá, João F. R. Tonini, Hannah van Huss, A.P. Long, Travis Cuddy, Maurício C. Forlani, Pedro L. V. Peloso, Hussam Zaher, Célio F. B. Haddad · 2018 · Molecular Phylogenetics and Evolution
21. A high‐quality chromosome‐level genome assembly of a generalist herbivore, Trichoplusia ni
    Wenbo Chen, Xiaowei Yang, Guillaume Tetreau, Xiaozhao Song, Cathy Coutu, Dwayne D. Hegedus, Gary W. Blissard, Zhangjun Fei, Ping Wang · 2018 · Molecular Ecology Resources
22. Species composition, diversity, and distribution of the genus Ulva along the coast of Jeju Island, Korea based on molecular phylogenetic analysis
    Ji Hyoun Kang, Ji Eun Jang, Jae Hwan Kim, Seo Yeon Byeon, Sangil Kim, Sun Kyeong Choi, Yun Hee Kang, Sang Rul Park, Hyuk Je Lee · 2019 · PLoS ONE
23. 2000-year-old pathogen genomes reconstructed from metagenomic analysis of Egyptian mummified individuals
    Judith Neukamm, Saskia Pfrengle, Martyna Molak, Alexander Seitz, Michael Francken, Partick Eppenberger, Charlotte Avanzi, Ella Reiter, Christian Urban, Beatrix Welte et al. · 2020 · BMC Biology
24. Genomic epidemiology of emerging ESBL-producing Salmonella Kentucky bla CTX-M-14b in Europe
    Claudia E. Coipan, Therese Westrell, Angela H. A. M. van Hoek, Erik Alm, Saara Kotila, Bas Berbers, Sigrid C. J. De Keersmaecker, Pieter‐Jan Ceyssens, Maria Louise Borg, Marie Anne Chattaway et al. · 2020 · Emerging Microbes & Infections
25. Evolutionary dynamics of the chromatophore genome in three photosynthetic Paulinella species
    Lhee, Duckhyun, Ha, Ji-San, Kim, Sunju, Park, Myung Gil, Bhattacharya, Debashish, Yoon, Hwan Su · 2019 · Scientific Reports
26. Ancient Gondwana break‐up explains the distribution of the mycoheterotrophic family Corsiaceae (Liliales)
    Constantijn B. Mennes, Vivienne K. Y. Lam, Paula J. Rudall, Stephanie P. Lyon, Sean W. Graham, ERIK F. SMETS, Vincent S. F. T. Merckx · 2015 · Journal of Biogeography
27. Including autapomorphies is important for paleontological tip-dating with clocklike data, but not with non-clock data
    Nicholas J. Matzke, Randall B. Irmis · 2018 · PeerJ
28. Origin and dispersal of Hepatitis E virus
    Diego Forni, Rachele Cagliani, Mario Clerici, Manuela Sironi · 2018 · Emerging Microbes & Infections
29. A Systematist’s Guide to Estimating Bayesian Phylogenies From Morphological Data
    April Marie Wright · 2019 · Insect Systematics and Diversity
30. Common lizards break Dollo’s law of irreversibility: Genome-wide phylogenomics support a single origin of viviparity and re-evolution of oviparity
    Hans Recknagel, Nicholas A. Kamenos, Kathryn R. Elmer · 2018 · Molecular Phylogenetics and Evolution
31. A new species group from the Daphnia curvirostris species complex (Cladocera: Anomopoda) from the eastern Palaearctic: taxonomy, phylogeny and phylogeography
    Alexey A. Kotov, Petr G. Garibian, Eugeniya I. Bekker, Derek J. Taylor, Карабанов Дмитрий Павлович · 2020 · Zoological Journal of the Linnean Society
32. Pseudo Dollo models for the evolution of binary characters along a tree
    Remco Bouckaert, Martine Robbeets · 2017 · bioRxiv (Cold Spring Harbor Laboratory)
33. Phylogenomics and Plastome Evolution of Tropical Forest Grasses (Leptaspis, Streptochaeta: Poaceae)
    Sean V. Burke, Choun‐Sea Lin, William P. Wysocki, Lynn G. Clark, Melvin R. Duvall · 2016 · Frontiers in Plant Science
34. Phylogenomics of montane frogs of the Brazilian Atlantic Forest is consistent with isolation in sky islands followed by climatic stability
    Marcio Roberto Pie, Brant C. Faircloth, Luiz Fernando Ribeiro, Marcos Ricardo Bornschein, John E. McCormack · 2018 · Biological Journal of the Linnean Society
35. Origin and hidden diversity within the poorly known Galápagos snake radiation (Serpentes: Dipsadidae)
    Hussam Zaher, Mario H. Yánez-Muñóz, Miguel Tréfaut Rodrigues, Roberta Graboski, Fabio Andrade Machado, Marco Altamirano-Benavides, Sandro L. Bonatto, Felipe G. Grazziotin · 2018 · Systematics and Biodiversity
36. Sex-Biased Dispersal Obscures Species Boundaries in Integrative Species Delimitation Approaches
    Jonas Eberle, Erika Bazzato, Silvia Fabrizi, Michele Rossini, Mariastella Colomba, Davide Cillo, Marco Uliana, Ignazio Sparacio, Guido Sabatinelli, Rachel C. M. Warnock et al. · 2018 · Systematic Biology
37. Towards a rigorous species delimitation framework for scleractinian corals based on RAD sequencing: the case study of Leptastrea from the Indo-Pacific
    Roberto Arrigoni, Michael L. Berumen, Kiruthiga Gayathri Mariappan, Pieter S. A. Beck, Ann Marie Hulver, Simone Montano, Michel Pichon, Giovanni Strona, Tullia I. Terraneo, Francesca Benzoni · 2020 · Coral Reefs
38. Phylogenomics and biogeography of Catalpa (Bignoniaceae) reveal incomplete lineage sorting and three dispersal events
    Wenpan Dong, Yanlei Liu, Enze Li, Chao Xu, Jiahui Sun, Wenying Li, Shiliang Zhou, Zhixiang Zhang, Zhili Suo · 2021 · Molecular Phylogenetics and Evolution
39. Pathogenomic analyses of Shigella isolates inform factors limiting shigellosis prevention and control across LMICs
    Rebecca J. Bengtsson, Adam J. Simpkin, Caisey V. Pulford, Ross S. Low, David A. Rasko, Daniel John Rigden, Neil Hall, Eileen M. Barry, Sharon M. Tennant, Kate S. Baker · 2022 · Nature Microbiology
40. Multi-locus tree and species tree approaches toward resolving a complex clade of downy mildews (Straminipila, Oomycota), including pathogens of beet and spinach
    Young‐Joon Choi, Steven J. Klosterman, Volker Kummer, Hermann Voglmayr, Hyeon‐Dong Shin, Marco Thines · 2015 · Molecular Phylogenetics and Evolution
41. Land connectivity changes and global cooling shaped the colonization history and diversification of New World quail (Aves: Galliformes: Odontophoridae)
    Peter A. Hosner, Edward Louis Braun, Rebecca T. Kimball · 2015 · Journal of Biogeography
42. Phylogeography of the heavily poached A frican common pangolin (Pholidota, Manis tricuspis) reveals six cryptic lineages as traceable signatures of Pleistocene diversification
    Philippe Gaubert, Flobert Njiokou, Gabriel Ngua Ayecaba, Komlan Mawuli Afiademanyo, Sylvain Dufour, Jean Malekani, Sery Gonedelé Bi, Christelle Tougard, Ayodeji Olayemi, Emmanuel Danquah et al. · 2016 · Molecular Ecology
43. Inferring the shallow phylogeny of true salamanders (Salamandra) by multiple phylogenomic approaches
    Ariel Rodríguez, James D. Burgon, Mariana Lúcio Lyra, Iker Irisarri, Denis Baurain, Leon Blaustein, Bayram Göçmen, Sven Künzel, Barbara K. Mable, Arne W. Nolte et al. · 2017 · Molecular Phylogenetics and Evolution
44. Domestication Genomics of the Open-Pollinated Scarlet Runner Bean (Phaseolus coccineus L.)
    Azalea Guerra‐García, Marco Suárez‐Atilano, Alicia Mastretta‐Yanes, Alfonso Delgado‐Salinas, Daniel Piñero · 2017 · Frontiers in Plant Science
45. Molecular Evolution of the VP1 Gene in Human Norovirus GII.4 Variants in 1974–2015
    Takumi Motoya, Koo Nagasawa, Yuki Matsushima, Noriko Nagata, Akihide Ryo, Tsuyoshi Sekizuka, Akifumi Yamashita, Makoto Kuroda, Yukio Morita, Yoshiyuki Suzuki et al. · 2017 · Frontiers in Microbiology
46. Species delimitation at a global scale reveals high species richness with complex biogeography and patterns of symbiont association in Peltigera section Peltigera (lichenized Ascomycota: Lecanoromycetes)
    Nicolas Magain, Camille Tniong, Trevor Goward, Dongling Niu, Bernard Goffinet, Emmanuël Sérusiaux, Orvo Vitikainen, Francois M. Lutzoni, Jolanta Miądlikowska · 2018 · Taxon
47. Multiple Introductions of Mycobacterium tuberculosis Lineage 2–Beijing Into Africa Over Centuries
    Liliana K. Rutaihwa, Fabrizio Menardo, David Stucki, Sebastian M. Gygli, Serej D. Ley, Bijaya Malla, Julia Feldmann, Sònia Borrell, Christian Beisel, Keren Middelkoop et al. · 2019 · Frontiers in Ecology and Evolution
48. Deceleration of morphological evolution in a cryptic species complex and its link to paleontological stasis
    José Cerca, Christian Meyer, Dave Stateczny, Dominik Siemon, Jana Wegbrod, Günter Purschke, Dimitar Dimitrov, Torsten H. Struck · 2019 · Evolution
49. Systematics, biogeography, and diversification of Scytalopus tapaculos (Rhinocryptidae), an enigmatic radiation of Neotropical montane birds
    Carlos Daniel Cadena, Andrés M. Cuervo, Laura N. Céspedes, Gustavo A. Bravo, Niels K Krabbe, Thomas S. Schulenberg, Graham E. Derryberry, Luís Fábio Silveira, Elizabeth P. Derryberry, Robb Thomas Brumfield et al. · 2020 · The Auk
50. Niche conservatism promotes speciation in cycads: the case of Dioon merolae (Zamiaceae) in Mexico
    José Said Gutiérrez‐Ortega, María Magdalena Salinas‐Rodríguez, Takuro Ito, Miguel Ángel Pérez‐Farrera, Andrew P. Vovides, José F. Martínez, Francisco E. Molina‐Freaner, Antonio Hernández‐López, Lina G. Kawaguchi, Atsushi J. Nagano et al. · 2020 · New Phytologist
51. Resolving spatial complexities of hybridization in the context of the gray zone of speciation in North American ratsnakes ( Pantherophis obsoletus complex)
    Frank T. Burbrink, Marcelo Gehara, Alexander D. McKelvy, Edward A. Myers · 2020 · Evolution
52. Ultraconserved element phylogenomics and biogeography of the agriculturally important mason bee subgenus Osmia ( Osmia )
    Michael G. Branstetter, Antoine Müller, Terry Griswold, Michael C. Orr, Chao‐Dong Zhu · 2021 · Systematic Entomology
53. A New Pipeline for Removing Paralogs in Target Enrichment Data
    Wenbin Zhou, John Soghigian, Qiu‐Yun Xiang · 2021 · Systematic Biology
54. Phylogenomic Reconstruction Sheds Light on New Relationships and Timescale of Rails (Aves: Rallidae) Evolution
    Juan C. García–R, Emily Moriarty Lemmon, Alan R. Lemmon, Nigel Peter French · 2020 · Diversity
55. Chloroplast phylogenomic insights into the evolution of Distylium (Hamamelidaceae)
    Wenpan Dong, Yanlei Liu, Chao Xu, Yongwei Gao, Qingjun Yuan, Zhili Suo, Zhixiang Zhang, Jiahui Sun · 2021 · BMC Genomics
56. Mycobacterium leprae diversity and population dynamics in medieval Europe from novel ancient genomes
    Saskia Pfrengle, Judith Neukamm, Meriam Guellil, Marcel Keller, Martyna Molak, Charlotte Avanzi, Alena Kushniarevich, Núria Montes, Gunnar U. Neumann, Ella Reiter et al. · 2021 · BMC Biology
57. The role of Pleistocene glaciations in shaping the evolution of polar and brown bears. Evidence from a critical review of mitochondrial and nuclear genome analyses
    Alexandre Hassanin · 2015 · Comptes Rendus Biologies
58. Reducing the number of accepted species in Aspergillus series Nigri
    Chao Bian, Yoko Kusuya, F. Sklenář, Elizabet D’hooge, Takashi Yaguchi, Sayaka Ban, Cobus M. Visagie, Jos A. M. P. Houbraken, Hiroki Takahashi, Vít Hubka · 2022 · Studies in Mycology
59. Squamate Conserved Loci (Sq CL ): A unified set of conserved loci for phylogenomics and population genetics of squamate reptiles
    Sonal Singhal, Maggie R. Grundler, Guarino Rinaldi Colli, Daniel L. Rabosky · 2017 · Molecular Ecology Resources
60. The conquering of North America: dated phylogenetic and biogeographic inference of migratory behavior in bee hummingbirds
    Yuyini Licona-Vera, Juan Francisco Ornelas · 2017 · BMC Evolutionary Biology
61. Oat evolution revealed in the maternal lineages of 25 Avena species
    Yong‐Bi Fu · 2018 · Scientific Reports
62. Mitogenome phylogeographic analysis of a planktonic crustacean
    Peter D. Fields, Darren J. Obbard, Seanna J. McTaggart, Yan R. Galimov, Tom J. Little, Dieter Ebert · 2018 · Molecular Phylogenetics and Evolution
63. Comparative population genomics reveals key barriers to dispersal in Southern Ocean penguins
    Gemma V. Clucas, Jane L. Younger, Damian Kao, Louise Emmerson, Colin Southwell, Barbara C. Wienecke, Alex David Rogers, Charles‐André Bost, Gary D. Miller, Michael J. Polito et al. · 2018 · Molecular Ecology
64. Molecular phylogenetics of the African horseshoe bats (Chiroptera: Rhinolophidae): expanded geographic and taxonomic sampling of the Afrotropics
    Terrence C. Demos, Paul W. Webala, Steven Michael Goodman, Julian C. Kerbis Peterhans, Michael Bartonjo, Bruce D. Patterson · 2019 · BMC Evolutionary Biology
65. Applied evolution: phylogeny-based approaches in natural products research
    Martina Adamek, Mohammad M. Alanjary, Nadine Ziemert · 2019 · Natural Product Reports
66. Whole-chromosome hitchhiking driven by a male-killing endosymbiont
    Simon H. Martin, Kumar Saurabh Singh, Ian Jonathan Gordon, Kennedy Saitoti Omufwoko, Steve C. Collins, Ian A. Warren, Hannah Munby, Oskar Brattström, Walther Traut, Dino J. Martins et al. · 2020 · PLoS Biology
67. Historical biogeography identifies a possible role of Miocene wetlands in the diversification of the Amazonian rocket frogs (Aromobatidae: Allobates)
    Alexandre Réjaud, Miguel Tréfaut Rodrigues, Andrew J. Crawford, Santiago Castroviejo‐Fisher, Andrés F. Jaramillo-Martínez, Juan C. Chaparro, Frank Glaw, Giussepe Gagliardi‐Urrutia, Jiřı́ Moravec, Ignacio De la Riva et al. · 2020 · Journal of Biogeography
68. Ultraconserved yet informative for species delimitation: Ultraconserved elements resolve long‐standing systematic enigma in Central European bees
    Morgan Gueuning, Juerg Ernst Frey, Christophe J. Praz · 2020 · Molecular Ecology
69. Phylogenetic and genomic analysis reveals high genomic openness and genetic diversity of Clostridium perfringens
    Yuqing Feng, Xuezheng Fan, Liangquan Zhu, Xinyue Yang, Yan Liu, Shiguang Gao, Xiaolu Jin, Dan Liu, Jiabo Ding, Yuming Guo et al. · 2020 · Microbial Genomics
70. Genetic diversity of Nipah virus in Bangladesh
    Md Z. Rahman, M.M. Islam, M.E. Hossain, M M Rahman, A. Islam, A. Siddika, M.S.S. Hossain, Sadia Sultana, A. Islam, M. Rahman et al. · 2020 · International Journal of Infectious Diseases
71. Discovery of a glowing millipede in California and the gradual evolution of bioluminescence in Diplopoda
    Paul E. Marek, Wendy Moore · 2015 · Proceedings of the National Academy of Sciences
72. Phylogenomic and Comparative Analyses of Complete Plastomes of Croomia and Stemona (Stemonaceae)
    Qixiang Lu, Wenqing Ye, Ruisen Lu, Wuqin Xu, Yingxiong Qiu · 2018 · International Journal of Molecular Sciences
73. A Laurasian origin for a pantropical bird radiation is supported by genomic and fossil data (Aves: Coraciiformes)
    Jenna M. McCullough, Robert G. Moyle, Brian Tilston Smith, Michael J. Andersen · 2019 · Proceedings of the Royal Society B Biological Sciences
74. Episodic and guanine–cytosine‐biased bursts of intragenomic and interspecific synonymous divergence in Ajugoideae (Lamiaceae) mitogenomes
    Fang Liu, Weishu Fan, Junbo Yang, Chun‐Lei Xiang, Jeffrey P. Mower, De-Zhu Li, Andan Zhu · 2020 · New Phytologist
75. How mitonuclear discordance and geographic variation have confounded species boundaries in a widely studied snake
    Thomas L. Marshall, E. Anne Chambers, Mikhail V. Matz, David M. Hillis · 2021 · Molecular Phylogenetics and Evolution
76. Insect Radiations on Islands: Biogeographic Pattern and Evolutionary Process in Hawaiian Insects
    David H. Hembry, Gordon M. Bennett, Emilie Bess, Idelle A. Cooper, Steve Jordan, James Kenneth Liebherr, Karl N. Magnacca, Diana M. Percy, Dan A. Polhemus, Daniel Rubinoff et al. · 2021 · The Quarterly Review of Biology
77. Reconstruction of the human amylase locus reveals ancient duplications seeding modern-day variation
    Feyza Yilmaz, Charikleia Karageorgiou, Kwondo Kim, Petar Pajic, Kendra Scheer, Christine R. Beck, Ann‐Marie Torregrossa, Charles Lee, Ömer Gökçümen, Peter A. Audano et al. · 2024 · Science
78. hybridcheck : software for the rapid detection, visualization and dating of recombinant regions in genome sequence data
    Ben J. Ward, Cock van Oosterhout · 2015 · Molecular Ecology Resources
79. Patterns of reproductive‐mode evolution in Old World tree frogs (Anura, Rhacophoridae)
    Madhava Meegaskumbura, Gayani Senevirathne, S. D. Biju, Sonali Garg, Suyama Meegaskumbura, Rohan S. Pethiyagoda, James Hanken, Christopher J. Schneider · 2015 · Zoologica Scripta
80. Molecular phylogenetics and biogeography of the mint tribe Elsholtzieae (Nepetoideae, Lamiaceae), with an emphasis on its diversification in East Asia
    Pan Li, Zhe‐Chen Qi, Luxian Liu, Tetsuo Ohi‐Toma, Joongku Lee, Tsung‐Hsin Hsieh, Chengxin Fu, Kenneth M. Cameron, Yingxiong Qiu · 2017 · Scientific Reports
81. Millions of Years Behind: Slow Adaptation of Ruminants to Grasslands
    Olja Toljagić, Kjetil Lysne Voje, Michael Matschiner, Lee Hsiang Liow, Thomas F. Hansen · 2017 · Systematic Biology
82. Rapid Gene Turnover as a Significant Source of Genetic Variation in a Recently Seeded Population of a Healthcare-Associated Pathogen
    Lucía Graña-Miraglia, Luis F. Lozano, Consuelo Velázquez, Patricia A. Volkow-Fernández, Ángeles Pérez-Oseguera, Miguel A. Cevallos, Santiago Castillo‐Ramírez · 2017 · Frontiers in Microbiology
83. Nuclear and mtDNA phylogenetic analyses clarify the evolutionary history of two species of native Hawaiian bats and the taxonomy of Lasiurini (Mammalia: Chiroptera)
    Amy B. Baird, Janet K. Braun, Mark D. Engstrom, Ashlyn C. Holbert, Maritza G. Huerta, Burton K. Lim, Michael A. Mares, John C. Patton, John W. Bickham · 2017 · PLoS ONE
84. A stable phylogenomic classification of Travunioidea (Arachnida, Opiliones, Laniatores) based on sequence capture of ultraconserved elements
    Shahan Derkarabetian, James Starrett, Nobuo Tsurusaki, Darrell Ubick, Stephanie Castillo, Marshal C. Hedin · 2018 · ZooKeys
85. Vanishing refuge? Testing the forest refuge hypothesis in coastal East Africa using genome‐wide sequence data for seven amphibians
    Christopher D. Barratt, Beryl A. Bwong, Robert Jehle, H. Christoph Liedtke, Peter Nagel, Renske E. Onstein, Daniel M. Portik, Jeffrey W. Streicher, Simon P. Loader · 2018 · Molecular Ecology
86. A viral metagenomic survey identifies known and novel mammalian viruses in bats from Saudi Arabia
    Nischay Mishra, Shamsudeen Faisal Fagbo, Abdulaziz Nasser Alagaili, Adam D. Nitido, Simon Hedley Williams, James Ng, Bohyun Lee, Abdulkareem Durosinlorun, Joel A. Garcia, Komal Jain et al. · 2019 · PLoS ONE
87. Historical biogeography of herbivorous coral reef fishes: The formation of an Atlantic fauna
    Alexandre C. Siqueira, David R. Bellwood, Peter F. Cowman · 2019 · Journal of Biogeography
88. Over 100 Million Years of Enzyme Evolution Underpinning the Production of Morphine in the Papaveraceae Family of Flowering Plants
    Yi Li, Thilo Winzer, Zhesi He, Ian A. Graham · 2020 · Plant Communications
89. Cheating in arbuscular mycorrhizal mutualism: a network and phylogenetic analysis of mycoheterotrophy
    Benoît Perez‐Lamarque, Marc‐André Selosse, Maarja Öpik, Hélène Morlon, Florent Martos · 2020 · New Phytologist
90. Genomic surveillance of Escherichia coli ST131 identifies local expansion and serial replacement of subclones
    Catherine Ludden, Arun Gonzales Decano, Dorota M. Jamrozy, Derek Pickard, Dearbháile Morris, Julian Parkhill, Sharon J. Peacock, Martin Cormican, Tim Downing · 2020 · Microbial Genomics
91. HIV-1 variants are archived throughout infection and persist in the reservoir
    Kelsie Brooks, Bradley R. Jones, Dario Alberto Dilernia, Daniel J. Wilkins, Daniel T. Claiborne, Samantha McInally, Jill W Gilmour, William Kilembe, Jeffrey B. Joy, Susan A Allen et al. · 2020 · PLoS Pathogens
92. Osteology ofKlamelisaurus gobiensis(Dinosauria, Eusauropoda) and the evolutionary history of Middle–Late Jurassic Chinese sauropods
    Andrew Moore, Paul Upchurch, Paul M. Barrett, James Matthew Clark, Xing Xu · 2020 · Journal of Systematic Palaeontology
93. Dawn of astome ciliates in light of morphology and time-calibrated phylogeny of Haptophrya planariarum, an obligate endosymbiont of freshwater turbellarians
    Matej Rataj, Peter Vďačný · 2018 · European Journal of Protistology
94. Plastid genome data provide new insights into the phylogeny and evolution of the genus Epimedium
    Mengyue Guo, Xiaohui Pang, Yanqin Xu, Wenjun Jiang, Baosheng Liao, Jingsheng Yu, Jiang Xu, Jingyuan Song, Shilin Chen · 2021 · Journal of Advanced Research
95. Extant species fail to estimate ancestral geographical ranges at older nodes in primate phylogeny
    Anna L. Wisniewski, Graeme T. Lloyd, Graham J. Slater · 2022 · Proceedings of the Royal Society B Biological Sciences
96. Cophylogeny and specificity between cryptic coral species ( Pocillopora spp.) at Mo′orea and their symbionts (Symbiodiniaceae)
    Erika C. Johnston, Ross Cunning, Scott C. Burgess · 2022 · Molecular Ecology
97. Standardized nuclear markers improve and homogenize species delimitation in Metazoa
    Lars Dietz, Jonas Eberle, Christoph Mayer, Sandra Kukowka, Claudia Bohacz, Hannes Baur, Marianne Espeland, Bernhard A. Huber, Carl R. Hutter, Ximo Mengual et al. · 2022 · Methods in Ecology and Evolution
98. Phylogeography by diffusion on a sphere: whole world phylogeography
    Remco Bouckaert · 2016 · PeerJ
99. Entire nucleotide sequences of Gossypium raimondii and G. arboreum mitochondrial genomes revealed A‐genome species as cytoplasmic donor of the allotetraploid species
    Zhiwen Chen, H. Nie, Corrinne E. Grover, Y. Wang, P. Li, Manhong Wang, Haili Pei, Yanjie Zhao, Sen Li, Jonathan F. Wendel et al. · 2016 · Plant Biology
100. Mutation and recombination in pathogen evolution: Relevance, methods and controversies
     Miguel Arenas, Natalia Motta Araujo, Catarina Branco, Nadine Castelhano, Eduardo Castro‐Nallar, Marcos Pérez‐Losada · 2017 · Infection Genetics and Evolution