BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis

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Items 701–800 of 1,005

1. Cytonuclear discordance, reticulation and cryptic diversity in one of North America's most common frogs
   Nicholas A. Cairns, Amanda S. Cicchino, Kathryn A. Stewart, James D. Austin, Stephen C. Lougheed · 2020 · Molecular Phylogenetics and Evolution
2. Putative Novel Effector Genes Revealed by the Genomic Analysis of the Phytopathogenic Fungus Fusarium oxysporum f. sp. physali (Foph) That Infects Cape Gooseberry Plants
   Jaime Simbaqueba, Edwin Rodríguez, Diana Marcela Burbano David, Carolina González, Alejandro Caro‐Quintero · 2021 · Frontiers in Microbiology
3. Model design for nonparametric phylodynamic inference and applications to pathogen surveillance
   Xavier Didelot, Vinícius Bonetti Franceschi, Simon D. W. Frost, Ann M. Dennis, Erik Volz · 2023 · Virus Evolution
4. Holocene population expansion of a tropical bee coincides with early human colonization of Fiji rather than climate change
   James B. Dorey, Scott V. C. Groom, Alejandro Velasco‐Castrillón, Mark I. Stevens, Michael S. Y. Lee, Michael P. Schwarz · 2021 · Molecular Ecology
5. Metabolome and Transcriptome Analyses Reveal Different Flavonoid Biosynthesis and Chlorophyll Metabolism Profiles between Red Leaf and Green Leaf of Eucommia ulmoides
   Yun Yang, Mengjiao Chen, Yaxin Liu, Huanhuan Ding, Hongyan Du, Zhiqiang Sun, Jingle Zhu · 2021 · Forests
6. Allometric conservatism in the evolution of bird beaks
   Louie M. K. Rombaut, Elliot J. R. Capp, Christopher R. Cooney, Emma C. Hughes, Zoë K. Varley, Gavin Huw Thomas · 2021 · Evolution Letters
7. Diversity of Land Snail Tribe Helicini (Gastropoda: Stylommatophora: Helicidae): Where Do We Stand after 20 Years of Sequencing Mitochondrial Markers?
   Ondřej Korábek, Lucie Juřičková, Adam Petrusek · 2021 · Diversity
8. Mitogenomics of the suborder Cottoidei (Teleostei: Perciformes): Improved assemblies, mitogenome features, phylogeny, and ecological implications
   Simo N. Maduna, Adam Vivian‐Smith, Ólöf D.B. Jónsdóttir, Albert K. D. Imsland, Cornelya F. C. Klütsch, Tommi Nyman, Hans Geir Eiken, Snorre B. Hagen · 2022 · Genomics
9. Mitochondrial capture and subsequent genetic divergence generates a novel haplogroup: evidence from ancient and ongoing hybridization in mule and white-tailed deer
   Emily A. Wright, E. Roberts, Roy N. Platt, Jacob V. Bayouth, Warren C. Conway, Robert D. Bradley · 2021 · Journal of Mammalogy
10. Incomplete lineage sorting and local extinction shaped the complex evolutionary history of the Paleogene relict conifer genus, Chamaecyparis (Cupressaceae)
    Yi Wang, Markus Ruhsam, RICHARD IAN MILNE, Sean W. Graham, Jialiang Li, Tongzhou Tao, Yujiao Zhang, Kangshan Mao · 2022 · Molecular Phylogenetics and Evolution
11. Phylogenomic dating and Bayesian biogeography illuminate an antitropical pattern for eucerine bees
    Felipe V. Freitas, Michael G. Branstetter, Daniel Casali, Antônio J. C. Aguiar, Terry Griswold, Eduardo A. B. Almeida · 2022 · Journal of Biogeography
12. A molecular phylogeny and phylogeography of Greek Aegean Island sand flies of the genus Phlebotomus (Diptera: Psychodidae)
    Christoforos Pavlou, Εmmanouil Dokianakis, Nikolaos Tsirigotakis, Vasiliki Christodoulou, Yusuf Özbel, Μαρία Αντωνίου, Nikos Poulakakis · 2022 · Arthropod Systematics & Phylogeny
13. Gene flow, genomic homogenization and the timeline to speciation in Amazonian manakins
    Alfredo O. Barrera‐Guzmán, Alexandre Luis Padovan Aleixo, Maya Sonnenschein Faccio, Sidnei de Melo Dantas, Jason T. Weir · 2022 · Molecular Ecology
14. Lineage and role in integrative taxonomy of a heterotrophic orchid complex
    Craig F. Barrett, Mathilda V. Santee, Nicole M. Fama, John V. Freudenstein, Sandra J. Simon, Brandon T. Sinn · 2022 · Molecular Ecology
15. New Insights Into the Backbone Phylogeny and Character Evolution of Corydalis (Papaveraceae) Based on Plastome Data
    Xiaodong Xu, Xuexiu Li, Dong Wang · 2022 · Frontiers in Plant Science
16. How To Be a Successful Monopartite Begomovirus in a Bipartite-Dominated World: Emergence and Spread of Tomato Mottle Leaf Curl Virus in Brazil
    Juliana Osse de Souza, Tomás A. Melgarejo, Sandra Thuy Vu, Erich Y. T. Nakasu, Lifang Chen, María R. Rojas, Francisco Murilo Zerbini Júnior, Alice Kazuko Inoue-Nagata, R. L. Gilbertson · 2022 · Journal of Virology
17. Genomic and geographic diversification of a “great-speciator” (Rhipidura rufifrons)
    Lukas B. Klicka, Luke C. Campillo, Joseph D. Manthey, Michael J. Andersen, John Philip Dumbacher, Christopher E. Filardi, Leo Joseph, J. Albert C. Uy, Douglas E. Weidemann, Robert G. Moyle · 2022 · The Auk
18. Biogeography in the deep: Hierarchical population genomic structure of two beaked whale species
    Aubrie B. Onoufriou, Oscar E. Gaggiotti, Natacha Aguilar de Soto, Morgan L. McCarthy, Phillip A. Morin, Massimiliano Rosso, Merel L. Dalebout, Nicholas John Davison, Robin William Baird, C. Scott Baker et al. · 2022 · Global Ecology and Conservation
19. Between the Cape Fold Mountains and the deep blue sea: Comparative phylogeography of selected codistributed ectotherms reveals asynchronous cladogenesis
    Angus Macgregor Myburgh, Savel R. Daniels · 2022 · Evolutionary Applications
20. Historical biogeography highlights the role of Miocene landscape changes on the diversification of a clade of Amazonian tree frogs
    Diego Ortiz, Conrad J. Hoskin, Fernanda P. Werneck, Alexandre Réjaud, Sophie Manzi, Santiago R. Ron, Antoine Fouquet A · 2022 · Organisms Diversity & Evolution
21. Phylogenomics of Anguis and Pseudopus (Squamata, Anguidae) indicates Balkan-Apennine mitochondrial capture associated with the Messinian event
    Václav Gvoždík, Tadeáš Nečas, Daniel Jablonski, Emily Moriarty Lemmon, Alan R. Lemmon, Dávid Jandzík, Jiří Moravec · 2022 · Molecular Phylogenetics and Evolution
22. Complex macroevolution of pterosaurs
    Yilun Yu, Chi Zhang, Xing Xu · 2023 · Current Biology
23. Impacts of Taxon-Sampling Schemes on Bayesian Tip Dating Under the Fossilized Birth-Death Process
    Arong Luo, Chi Zhang, Qing‐Song Zhou, Simon Y. W. Ho, Chao‐Dong Zhu · 2023 · Systematic Biology
24. The biogeography of extant lungfishes traces the breakup of Gondwana
    Chase Doran Brownstein, Richard C Harrington, Thomas J. Near · 2023 · Journal of Biogeography
25. Complex Patterns of Diversification in the Gray Zone of Speciation: Model-Based Approaches Applied to Patagonian Liolaemid Lizards (Squamata: Liolaemus kingii clade)
    Kevin Imanol Sánchez, Emilce Guadalupe Diaz Huesa, María Florencia Breitman, Luciano Javier Ávila, Jack W. Sites, Mariana M. Morando · 2023 · Systematic Biology
26. Insect phylogeny structures the bacterial communities in the microbiome of psyllids (Hemiptera: Psylloidea) in Aotearoa New Zealand
    Francesco Martoni, Simon R. Bulman, Alexander M. Piper, Andrew R. Pitman, Gary S. Taylor, Karen Armstrong · 2023 · PLoS ONE
27. Comparison of the Efficiency of Single-Locus Species Delimitation Methods: A Case Study of a Single Lake Fish Population in Comparison against the Barcodes from International Databases
    Карабанов Дмитрий Павлович, Alexey A. Kotov, Е. А. Боровикова, Yu. V. Kodukhova, Xiaowei Zhang · 2023 · Water
28. Nucleotide Substitution Model Selection Is Not Necessary for Bayesian Inference of Phylogeny With Well-Behaved Priors
    Luiza Guimarães Fabreti, Sebastian Höhna · 2023 · Systematic Biology
29. Genomics reveals introgression and purging of deleterious mutations in the Arabian leopard (Panthera pardus nimr)
    Gabriel Mochales‐Riaño, Claudia Fontsere, Marc de Manuel, Adrián Talavera, Bernat Burriel‐Carranza, Héctor Tejero‐Cicuéndez, Raed Hamoud M. AlGethami, Mohammed Y. Shobrak, Tomàs Marquès‐Bonet, Salvador Carranza · 2023 · iScience
30. Relaxed purifying selection pressure drives accelerated and dynamic gene rearrangements in thrips (Insecta: Thysanoptera) mitochondrial genomes
    Qiaoqiao Liu, Yao D. Cai, Ling Ma, Hangrui Liu, Tianye Linghu, Shaokun Guo, Shu‐Jun Wei, Fan Song, Li Tian, Wanzhi Cai et al. · 2023 · International Journal of Biological Macromolecules
31. Evolutionary response of cold‐adapted chasmophytic plants to Quaternary climatic oscillations in the Mountains of Central Asia (a world hotspot of biodiversity)
    Marcin Nobis, Ewelina Klichowska, Lizaveta Vintsek, Anna Maria Wróbel, Agnieszka Nobis, Joanna Zalewska‐Gałosz, Arkadiusz S. Nowak · 2023 · Diversity and Distributions
32. Bathymetric evolution of black corals through deep time
    Jeremy Horowitz, Andrea M. Quattrini, Mercer R. Brugler, David John Miller, Kristina Pahang, Tom C. L. Bridge, Peter F. Cowman · 2023 · Proceedings of the Royal Society B Biological Sciences
33. Global Phylogeography and Genomic Epidemiology of Carbapenem-Resistant blaOXA-232–Carrying Klebsiella pneumoniae Sequence Type 15 Lineage
    Yuye Wu, Tian Jiang, Xianhong He, Jiayu Shao, Chenghao Wu, Weifang Mao, Huiqiong Jia, Fang He, Yingying Kong, Jianyong Wu et al. · 2023 · Emerging infectious diseases
34. A Morrison stem gekkotan reveals gecko evolution and Jurassic biogeography
    Dalton L. Meyer, Chase Doran Brownstein, Kelsey M. Jenkins, Jacques A. Gauthier · 2023 · Proceedings of the Royal Society B Biological Sciences
35. CDC48 in plants and its emerging function in plant immunity
    Damien Inès, Pierre‐Emmanuel Courty, David Wendehenne, Claire Rosnoblet · 2024 · Trends in Plant Science
36. Avian influenza viruses in New Zealand wild birds, with an emphasis on subtypes H5 and H7: Their distinctive epidemiology and genomic properties
    Wlodek L. Stanislawek, Toni Tana, Thomas G. Rawdon, Susan Catherine Cork, Kylie Chen, Hammed Olawale Fatoyinbo, Naomi Cogger, Richard J. Webby, Robert G. Webster, Maree Joyce et al. · 2024 · PLoS ONE
37. Structure, Evolution, and Mitochondrial Genome Analysis of Mussel Species (Bivalvia, Mytilidae)
    Yuri Ph. Kartavtsev, Natalia A. Masalkova · 2024 · International Journal of Molecular Sciences
38. Rapid identification and subsequent contextualization of an outbreak of methicillin-resistant Staphylococcus aureus in a neonatal intensive care unit using nanopore sequencing
    Rhys T. White, Sarah Bakker, Megan Burton, M. Leticia Castro, Christine Couldrey, Kristin H. Dyet, Alexandra Eustace, Chad Harland, Samantha Hutton, Donia P Macartney-Coxson et al. · 2024 · Microbial Genomics
39. New insights into the phylogenetic relationships within the Lauraceae from mitogenomes
    Song Yu, Qunfei Yu, Di Zhang, Ligang Chen, Yun‐Hong Tan, Wen Zhu, Hao Su, Xin Yao, Chao Liu, Richard Thomas Corlett · 2024 · BMC Biology
40. Coronavirus surveillance of wildlife in the Lao People’s Democratic Republic detects viral RNA in rodents
    David J. McIver, Soubanh Silithammavong, Watthana Theppangna, Amethyst N. Gillis, Bounlom Douangngeun, Kongsy Khammavong, Sinpakone Singhalath, Veasna Duong, Philippe Buchy, Sarah H. Olson et al. · 2020 · Archives of Virology
41. The queen conch mitogenome: intra- and interspecific mitogenomic variability in Strombidae and phylogenetic considerations within the Hypsogastropoda
    Salima Machkour‐M’Rabet, Margaret M. Hanes, Josué Jacob Martínez-Noguez, Jorge Cruz-Medina, Francisco Javier García-De León · 2021 · Scientific Reports
42. Respiratory Heme A-Containing Oxidases Originated in the Ancestors of Iron-Oxidizing Bacteria
    Mauro Degli Esposti, Viridiana Garcia-Meza, Agueda E. Ceniceros Gómez, Ana Moya-Beltrán, Raquel Quatrini, Lars Hederstedt · 2021 · Frontiers in Microbiology
43. A molecular phylogenetic investigation of tick species in Eastern and Southeastern Anatolia
    Olcay Hekimoğlu, Mehmet Kürşat Şahin, Gökhan Ergan, Nurdan Özer · 2021 · Ticks and Tick-borne Diseases
44. Patterns and Predictors of Small Mammal Phylogenetic and Functional Diversity in Contrasting Elevational Gradients in Kenya
    Kenneth Otieno Onditi, Wen‐Yu Song, Xue-You Li, Zhongzheng Chen, Quan Li, Shui-Wang He, Simon Musila, Esther Ndaisi Kioko, Xuelong Jiang · 2022 · Frontiers in Ecology and Evolution
45. Demographic history shapes genomic variation in an intracellular parasite with a wide geographical distribution
    Pascal Angst, Dieter Ebert, Peter D. Fields · 2022 · Molecular Ecology
46. Huntsman spider phylogeny informs evolution of life history, egg sacs, and morphology
    Jacob A. Gorneau, Cristina Anne Rheims, Corrie Saux Moreau, Linda S. Rayor · 2022 · Molecular Phylogenetics and Evolution
47. Extensive sharing of chloroplast haplotypes among East Asian Cerris oaks: The imprints of shared ancestral polymorphism and introgression
    Yao Li, Lu Wang, Xingwang Zhang, Hongzhang Kang, Chunjiang Liu, Lingfeng Mao, Yanming Fang · 2022 · Ecology and Evolution
48. Evolution and Biogeographic History of Rubyspot Damselflies (Hetaerininae: Calopterygidae: Odonata)
    Samantha Standring, Melissa Sánchez Herrera, Rhainer Guillermo Nascimento Ferreira, Jessica L. Ware, Yesenia Margarita Vega‐Sánchez, Rebecca A. Clement, Jonathan P. Drury, Gregory F. Grether, Antonio González‐Rodríguez, Luis Mendoza‐Cuenca et al. · 2022 · Diversity
49. Phylogeny and biogeography of Indochinese freshwater mussels in the genus Pilsbryoconcha Simpson, 1900 (Bivalvia: Unionidae) with descriptions of four new species
    Ekgachai Jeratthitikul, Siwanon Paphatmethin, Chirasak Sutcharit, Peng Bun Ngor, Khamla Inkhavilay, Pongpun Prasankok · 2022 · Scientific Reports
50. Computational Strategies to Combat COVID-19: Useful Tools to Accelerate SARS-CoV-2 and Coronavirus Research
    Franziska Hufsky, Kevin Lamkiewicz, Alexandre Almeida, Abdel Aouacheria, Cecilia N. Arighi, Alex G. Bateman, Jan Baumbach, Niko Beerenwinkel, Christian Brandt, Marco Cacciabue et al. · 2020 · Preprints.org
51. Joint inference of species histories and gene flow
    Nicola Felix Müller, Huw A. Ogilvie, Chi Zhang, Michaël C. Fontaine, Jorge-Eduardo Amaya-Romero, Alexei J. Drummond, Tanja Stadler · 2018 · bioRxiv (Cold Spring Harbor Laboratory)
52. Independent expansion, selection, and hypervariability of the TBC1D3 gene family in humans
    Guitart, Xavi, Porubsky, David, Yoo, DongAhn, Dougherty, Max L., Dishuck, Philip C., Munson, Katherine M., Lewis, Alexandra P., Hoekzema, Kendra, Knuth, Jordan, Chang, Stephen et al. · 2024 · Genome Research
53. SEGUL: Ultrafast, memory‐efficient and mobile‐friendly software for manipulating and summarizing phylogenomic datasets
    Heru Handika, Jacob A. Esselstyn · 2024 · Molecular Ecology Resources
54. Macrolide-resistant Mycoplasma pneumoniae resurgence in Chinese children in 2023: a longitudinal, cross-sectional, genomic epidemiology study
    Chao Yan, Shanwei Tong, Yarong Wu, Yujie Chen, Xinyu Jia, Yan Guo, Mengnan Cui, Guangqian Pei, Zuming Zhang, Hao Zhou et al. · 2025 · The Lancet Microbe
55. Exceptional Enlargement of the Mitochondrial Genome Results from Distinct Causes in Different Rain Frogs (Anura: Brevicipitidae: Breviceps)
    Keitaro Hemmi, Ryosuke Kakehashi, Chiaki Kambayashi, Louis Du Preez, Leslie R. Minter, Nobuaki Furuno, Atsushi Kurabayashi · 2020 · International Journal of Genomics
56. Multiple waves of freshwater colonization of the three-spined stickleback in the Japanese Archipelago
    Ryo Kakioka, Seiichi Mori, Tomoyuki Kokita, Takuya K. Hosoki, Atsushi J. Nagano, Asano Ishikawa, Manabu Kume, Atsushi Toyoda, Jun Kitano · 2020 · BMC Evolutionary Biology
57. Plastome genomics in South American maize landraces: chloroplast lineages parallel the geographical structuring of nuclear gene pools
    Mariana G. López, Monica Irina Fass, Juan Gabriel Rivas, José Carbonell‐Caballero, Pablo Vera, Andrea Puebla, Raquel Alicia Defacio, Joaquı́n Dopazo, Norma Beatriz Paniego, Horacio Esteban Hopp et al. · 2021 · Annals of Botany
58. Deep in the systematics of Camallanidae (Nematoda): using integrative taxonomy to better understand the phylogeny and consistency of diagnostic traits
    Lorena G. Ailán-Choke, Felipe Bisaggio Pereira · 2021 · Parasitology
59. Spatiotemporal Phylodynamics of Hepatitis C Among People Who Inject Drugs in India
    Steven J. Clipman, Shruti H. Mehta, Mary A. Rodgers, Priya Duggal, Aylur Kailasam Srikrishnan, Shanmugam Saravanan, Pachamuthu Balakrishnan, Canjeevaran K. Vasudevan, Stuart C. Ray, Muniratnam Suresh Kumar et al. · 2021 · Hepatology
60. The explosive radiation, intense host-shifts and long-term failure to speciate in the evolutionary history of the feather mite genusAnalges(Acariformes: Analgidae) from European passerines
    Jacek Dabert, Serge V. Mironov, Mirosława Dabert · 2021 · Zoological Journal of the Linnean Society
61. Phylogeography and demographic history of the black kite Milvus migrans , a widespread raptor in Eurasia, Australia and Africa
    Natalya G. Andreyenkova, Igor V. Karyakin, Ivan J. Starikov, Hedwig Sauer‐Gürth, Ivan Literák, Oleg V. Andreyenkov, Elena P. Shnayder, Rinur H. Bekmansurov, Marina N. Alexeyenko, Michaël Wink et al. · 2021 · Journal of Avian Biology
62. Stasis and diversity in living fossils: Species delimitation and evolution of lingulid brachiopods
    Ryutaro Goto, Tsuyoshi Takano, Koji Seike, Momo Yamashita, Gustav Paulay, Kuʻulei S. Rodgers, Cynthia L. Hunter, Piyoros Tongkerd, Shin’ichi Sato, Jae-Sang Hong et al. · 2022 · Molecular Phylogenetics and Evolution
63. Molecular phylogeny and systematics of bald uakaris, genus Cacajao Lesson, 1840 (Primates: Pitheciidae), with the description of a new species.
    Felipe Ennes Silva, João Valsecchi Do Amaral, C. Roos, M. Bowler, F. Röhe, Ricardo Sampaio, Mareike Cora Janiak, F. Bertuol, Marcelo Ismar Santana, José Henrique de Souza Silva et al. · 2022 · Molecular Phylogenetics and Evolution
64. Phylogenomics of the Caribbean melocacti: Cryptic species and multiple invasions
    Lucas C. Majure, Duniel Barrios, Edgardo Díaz, Lucas F. Bacci, Yuley Encarnación · 2022 · Taxon
65. Phototrophy and carbon fixation in Chlorobi postdate the rise of oxygen
    Lewis M. Ward, Patrick M. Shih · 2022 · PLoS ONE
66. Structural mutations of small single copy (SSC) region in the plastid genomes of five Cistanche species and inter-species identification
    Yujing Miao, Haimei Chen, Wanqi Xu, Qiaoqiao Yang, Chang Liu, Linfang Huang · 2022 · BMC Plant Biology
67. Phylogenetic and phylodynamic analyses of subtype-B metapneumovirus from chickens in Tunisia
    Jihene Lachheb, Zied Bouslama, Jihene Nsiri, Chaima Badr, Nazek Al‐Gallas, Nada Souissi, Imed Khazri, Imen Larbi, Khaled Kaboudi, Abdeljelil Ghram · 2022 · Poultry Science
68. Evolutionary dynamics of the clade 2.3.4.4B H5N8 high‐pathogenicity avian influenza outbreaks in coastal seabirds and other species in southern Africa from 2017 to 2019
    Belinda Peyrot, Célia Abolnik, Tasneem Anthony, Laura C. Roberts · 2022 · Transboundary and Emerging Diseases
69. Testing for Phylogenetic Signal in Single-Cell RNA-Seq Data
    Jiří C. Moravec, Robert Lanfear, David L. Spector, Sarah D. Diermeier, Alex Gavryushkin · 2022 · Journal of Computational Biology
70. Phylogenomics of the Ancient and Species-Depauperate Gars Tracks 150 Million Years of Continental Fragmentation in the Northern Hemisphere
    Chase Doran Brownstein, Liandong Yang, Matt Friedman, Thomas J. Near · 2022 · Systematic Biology
71. The Silk roads: phylogeography of Central Asian dice snakes (Serpentes: Natricidae) shaped by rivers in deserts and mountain valleys
    Daniel Jablonski, Konrad Mebert, Rafaqat Masroor, Evgeniy Simonov, Oleg Vitaljevich Kukushkin, Абдураупов Тимур Валерьевич, Sylvia Hofmann · 2023 · Current Zoology
72. Phylogenomics of One of the World’s Most Intriguing Groups of CAM Plants, the Opuntioids (Opuntioideae: Cactaceae): Adaptation to Tropical Dry Forests Helped Drive Prominent Morphological Features in the Clade
    Lucas C. Majure, Serena Achá, Marc A. Baker, Raúl Puente‐Martínez, Matias Köhler, Shannon D. Fehlberg · 2023 · Diversity
73. A New Assessment of Robust Capuchin Monkey (Sapajus) Evolutionary History Using Genome-Wide SNP Marker Data and a Bayesian Approach to Species Delimitation
    Amely Branquinho Martins, Mônica Mafra Valença-Montenegro, Marcela Guimarães Moreira Lima, Jessica Ward Lynch, Walfrido Kühl Svoboda, José de Sousa e Silva‐Júnior, Fábio Röhe, Jean P. Boubli, Anthony Di Fiore · 2023 · Genes
74. Rapid monitoring of ecological persistence
    Chuliang Song, Benno I. Simmons, Marie‐Josée Fortin, Andrew Gonzalez, Christopher N. Kaiser‐Bunbury, Serguei Saavedra · 2023 · Proceedings of the National Academy of Sciences
75. The ClaDS rate-heterogeneous birth–death prior for full phylogenetic inference in BEAST2
    Joëlle Barido‐Sottani, Hélène Morlon · 2023 · Systematic Biology
76. E vo P hylo : An r package for pre‐ and postprocessing of morphological data from relaxed clock Bayesian phylogenetics
    Tiago R. Simões, Noah Greifer, Joëlle Barido‐Sottani, Stephanie Elaine Pierce · 2023 · Methods in Ecology and Evolution
77. Mutation rates and adaptive variation among the clinically dominant clusters of Mycobacterium abscessus
    Nicoletta Commins, Mark R. Sullivan, Kerry McGowen, Evan M Koch, Eric J. Rubin, Maha Reda Farhat · 2023 · Proceedings of the National Academy of Sciences
78. The tangled biogeographic history of tarantulas: An African centre of origin rules out the centrifugal model of speciation
    Aritra Biswas, Ramamoorthi Chaitanya, K. Praveen Karanth · 2023 · Journal of Biogeography
79. Evolution and exchange of plasmids in pathogenic Neisseria
    Wearn‐Xin Yee, Tabea A. Elsener, Ana Cehovin, Martin C. J. Maiden, Christoph M. Tang · 2023 · mSphere
80. Evolution of the Araliaceae family involved rapid diversification of the Asian Palmate group and Hydrocotyle specific mutational pressure
    Jong‐Soo Kang, Giang N. L. Vo, Hyun-Seung Park, Young Sang Park, Woohyeon Cho, Van Binh Nguyen, Hyeonah Shim, Nomar Espinosa Waminal, Jee Young Park, Hyun Hee Kim et al. · 2023 · Scientific Reports
81. Disentangling the drivers of urban bird diversity in the non‐breeding season: A general synthesis
    Israel Moreno‐Contreras, Jukka Jokimäki, Marja‐Liisa Kaisanlahti‐Jokimäki, Lucas M. Leveau, Jukka Suhonen, Joseph A. Tobias, Piotr Tryjanowski · 2024 · Global Change Biology
82. Whole genome sequencing analysis of Mycobacterium tuberculosis reveals circulating strain types and drug-resistance mutations in the Philippines
    Linfeng Wang, Dodge R. Lim, Jody Emile Phelan, Lorenzo T. Reyes, Alma G. Palparan, Maria Guileane C. Sanchez, Louella A. Asuncion, Ma. Angelica A. Tujan, Inez Andrea P. Medado, Chona Mae Daga et al. · 2024 · Scientific Reports
83. A pangenome analysis reveals the center of origin and evolutionary history of Phytophthora infestans and 1c clade species
    Allison L. Coomber, Amanda C. Saville, Ignazio Carbone, Michael D. Martin, Vanessa C. Bieker, Jean Beagle Ristaino · 2025 · PLoS ONE
84. Comparative genomic analysis reveals high intra-serovar plasticity within Salmonella Napoli isolated in 2005–2017
    Eleonora Mastrorilli, Sara Petrin, Massimiliano Orsini, Alessandra Longo, Debora Cozza, Ida Luzzi, Antonia Ricci, Lisa Barco, Carmen Losasso · 2020 · BMC Genomics
85. Comparative genomics in infectious disease
    Ahmed M. Moustafa, Arnav Lal, Paul Joseph Planet · 2020 · Current Opinion in Microbiology
86. An integrative approach assesses the intraspecific variations ofProcamallanus(Spirocamallanus)inopinatus, a common parasite in Neotropical freshwater fishes, and the phylogenetic patterns of Camallanidae
    Lorena G. Ailán-Choke, Luiz Eduardo Roland Tavares, José Luís Luque, Felipe Bisaggio Pereira · 2020 · Parasitology
87. Molecular epidemiology in the HIV and SARS-CoV-2 pandemics
    Ramón Lorenzo-Redondo, Egon Anderson Ozer, Chad J. Achenbach, Richard T. D’Aquila, Judd F. Hultquist · 2020 · Current Opinion in HIV and AIDS
88. Evolution of reproductive strategies in the species-rich land snail subfamily Phaedusinae (Stylommatophora: Clausiliidae)
    Tomasz Mamos, Dennis R. Uit de Weerd, Parm Viktor von Oheimb, Anna Sulikowska‐Drozd · 2020 · Molecular Phylogenetics and Evolution
89. An Update on Trichoderma Mitogenomes: Complete De Novo Mitochondrial Genome of the Fungal Biocontrol Agent Trichoderma harzianum (Hypocreales, Sordariomycetes), an Ex-Neotype Strain CBS 226.95, and Tracing the Evolutionary Divergences of Mitogenomes in Trichoderma
    Yunyoung Kwak · 2021 · Microorganisms
90. Pleistocene dynamics of the Eurasian steppe as a driving force of evolution: Phylogenetic history of the genus Capsella (Brassicaceae)
    Anže Žerdoner Čalasan, Herbert Hurka, Dmitry A. German, Simon Pfanzelt, Frank R. Blattner, Anna Seidl, Barbara Neuffer · 2021 · Ecology and Evolution
91. Genome of the Giant Panda Roundworm Illuminates Its Host Shift and Parasitic Adaptation
    Yue Xie, Sen Wang, Shuangyang Wu, Shenghan Gao, Qingshu Meng, Chengdong Wang, Jingchao Lan, Li Luo, Xuan Zhou, Jing Xu et al. · 2021 · Genomics Proteomics & Bioinformatics
92. Not that young: combining plastid phylogenomic, plate tectonic and fossil evidence indicates a Palaeogene diversification of Cycadaceae
    Jian Liu, Anders J. Lindström, Thomas Edward Marler, Xun Gong · 2021 · Annals of Botany
93. Wildlife in Cameroon harbor diverse coronaviruses, including many closely related to human coronavirus 229E
    Nkom F. Ntumvi, Valantine Ngum Ndze, Amethyst N. Gillis, Joseph Le Doux Diffo, Ubald Tamoufé, Jean Michel Takuo, Mohamed Moctar Mouliom Mouiche, Julius Mbekem Nwobegahay, Matthew LeBreton, Anne W. Rimoin et al. · 2022 · Virus Evolution
94. Biogeographic breaks in the Atlantic Forest: evidence for Oligocene/Miocene diversification inBertolonia(Melastomataceae)
    Lucas F. Bacci, Marcelo Reginato, Thuane Bochorny, Fabián Armando Michelangeli, André M. Amorim, Renato Goldenberg · 2021 · Botanical Journal of the Linnean Society
95. Divergence time estimation using ddRAD data and an isolation-with-migration model applied to water vole populations of Arvicola
    Alfonso Balmori‐de la Puente, Jacint Ventura, Marcos Miñarro, Aitor Somoano, Jody Hey, José Castresana · 2022 · Scientific Reports
96. Phylogenomics Illuminates the Evolutionary History of Wild Silkmoths in Space and Time (Lepidoptera: Saturniidae)
    Rodolphe Rougerie, Astrid Cruaud, Pierre Arnal, Liliana Ballesteros‐Mejia, Thibaud Decaëns, Marianne Élias, Delphine Gey, Paul D. N. Hebert, Ian J. Kitching, Sébastien Lavergne et al. · 2026 · Systematic Biology
97. Investigating the reliability of molecular estimates of evolutionary time when substitution rates and speciation rates vary
    Andrew M. Ritchie, Xia Hua, Lindell D. Bromham · 2022 · BMC Ecology and Evolution
98. Understanding drivers of phylogenetic clustering and terminal branch lengths distribution in epidemics of Mycobacterium tuberculosis
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