BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis

Bayesian Data Analysis

Gelman, A., Carlin, J. B., Stern, H. S., & Rubin, D. B. (2003) · doi:10.1201/9780429258480 · Cited by 27,276

BEAST: Bayesian evolutionary analysis by sampling trees

Drummond, A. J., & Rambaut, A. (2007) · BMC Evolutionary Biology · doi:10.1186/1471-2148-7-214 · Cited by 13,104

A contribution to the mathematical theory of epidemics

Kermack, W. O., & McKendrick, A. G. (1927) · Proceedings of the Royal Society of London Series A Containing Papers of a Mathematical and Physical Character · doi:10.1098/rspa.1927.0118 · Cited by 11,854

BEAST 2: a software platform for Bayesian evolutionary analysis

Bouckaert, R., Heled, J., Kühnert, D., Vaughan, T., Wu, C.-H., Xie, D., Suchard, M. A., Rambaut, A., & Drummond, A. J. (2014) · PLoS Computational Biology · doi:10.1371/journal.pcbi.1003537 · Cited by 6,527

Relaxed Phylogenetics and Dating with Confidence

Drummond, A. J., Ho, S. Y. W., Phillips, M. J., & Rambaut, A. (2006) · PLoS Biology · doi:10.1371/journal.pbio.0040088 · Cited by 6,463 · cited 1×

Bayesian phylogenetic and phylodynamic data integration using BEAST 1.10

Suchard, M. A., Lemey, P., Baele, G., Ayres, D. L., Drummond, A. J., & Rambaut, A. (2018) · Virus Evolution · doi:10.1093/ve/vey016 · Cited by 3,749

A likelihood approach to estimating phylogeny from discrete morphological character data

Lewis, P. O. (2001) · Systematic Biology · doi:10.1080/106351501753462876 · Cited by 2,929

Inference of human population history from individual whole-genome sequences

Li, H., & Durbin, R. (2011) · Nature · doi:10.1038/nature10231 · Cited by 2,590

Bayesian inference of species trees from multilocus data

Heled, J., & Drummond, A. J. (2010) · Molecular Biology and Evolution · doi:10.1093/molbev/msp274 · Cited by 2,453

Codon-substitution models for heterogeneous selection pressure at amino acid sites

Yang, Z., Nielsen, R., Goldman, N., & Pedersen, A.-M. K. (2000) · Genetics · doi:10.1093/genetics/155.1.431 · Cited by 2,286

Four New Species of Torula (Torulaceae, Pleosporales) from Sichuan, China

Tian, W., Su, P., Chen, Y., & Maharachchikumbura, S. S. N. (2023) · Journal of Fungi · doi:10.3390/jof9020150 · Cited by 17

Mechanistic phylodynamic models do not provide conclusive evidence that non-avian dinosaurs were in decline before their final extinction

Allen, B. J., Oliveira, M. V. V., Stadler, T., Vaughan, T. G., & Warnock, R. C. M. (2024) · Cambridge Prisms Extinction · doi:10.1017/ext.2024.5 · Cited by 17

Phylogenetic insights into the Salicaceae: The evolution of willows and beyond

Ogutcen, E., Ferreira, P. D. L., Wagner, N. D., Marinček, P., Leong, J. V., Aubona, G., Cavender-Bares, J. M., Michálek, J., Schroeder, L., Sedio, B. E., et al. (2024) · Molecular Phylogenetics and Evolution · doi:10.1016/j.ympev.2024.108161 · Cited by 16

Speciation and historical invasions of the Asian black-spined toad (Duttaphrynus melanostictus)

Dufresnes, C., Jablonski, D., Ambu, J., Prasad, V. K., Gautam, K. B., Kamei, R. G., Mahony, S., Hofmann, S., Masroor, R., Alard, B., et al. (2025) · Nature Communications · doi:10.1038/s41467-024-54933-4 · Cited by 16

Toward a Phylogenetic Taxonomy of Sturgeons (Acipenseriformes: Acipenseridae)

Brownstein, C. D., & Near, T. J. (2025) · Bulletin of the Peabody Museum of Natural History · doi:10.3374/014.066.0101 · Cited by 16

One species to rule them all: genomics sheds light on the Pocillopora species diversity and distinctiveness around the Arabian Peninsula

Oury, N., Berumen, M. L., Paulay, G., & Benzoni, F. (2025) · Coral Reefs · doi:10.1007/s00338-025-02659-0 · Cited by 19

Highly Pathogenic Avian Influenza A(H5N1) in Wild Birds and a Human, British Columbia, Canada, 2024

Himsworth, C. G., Caleta, J. M., Jassem, A. N., Yang, K., Zlosnik, J. E. A., Tyson, J. R., Wilson, L., Kuchinski, K. S., Giacinti, J. A., Willie, M., et al. (2025) · Emerging infectious diseases · doi:10.3201/eid3106.241862 · Cited by 16

Biosynthesis and bioactivity of anti-inflammatory triterpenoids in Calendula officinalis

Golubova, D., Salmon, M., Su, H.-H., Tansley, C., Kaithakottil, G., Linsmith, G., Schudoma, C., Swarbreck, D., O'Connell, M. A., & Patron, N. J. (2025) · Nature Communications · doi:10.1038/s41467-025-62269-w · Cited by 16

Geographic containment and virulence‐resistance trade‐offs drive the evolution of hypervirulent Klebsiella pneumoniae

Wu, Y., Pu, F., Yan, Z., Zhang, Y., Chen, K., Li, S., Wang, Y., Lun, H., Qu, T., Wang, J., et al. (2025) · iMeta · doi:10.1002/imt2.70077 · Cited by 16

Reference genome bias in light of species-specific chromosomal reorganization and translocations

Maurstad, M. F., Hoff, S. N. K., Cerca, J., Ravinet, M., Bradbury, I., Jakobsen, K. S., Præbel, K., & Jentoft, S. (2025) · Genome biology · doi:10.1186/s13059-025-03761-w · Cited by 22

A fossil-calibrated phylogeny reveals the biogeographic history of the Cladrastis clade, an amphi-Pacific early-branching group in papilionoid legumes

Duan, L., Harris, A., Su, C., Wen, Y., Deng, S.-W., Fu, L., Wen, J., & Chen, H. (2019) · Molecular Phylogenetics and Evolution · doi:10.1016/j.ympev.2019.106673 · Cited by 16

Species boundaries and phylogeographic patterns in new species ofNannoniscus(Janiroidea: Nannoniscidae) from the equatorial Pacific nodule province inferred from mtDNA and morphology

Kaiser, S., Kihara, T. C., Brix, S., Mohrbeck, I., Janssen, A., & Jennings, R. M. (2020) · Zoological Journal of the Linnean Society · doi:10.1093/zoolinnean/zlaa174 · Cited by 16

Ecology of avian influenza viruses in migratory birds wintering within the Yangtze River wetlands

Wang, D., Li, M., Xiong, C., Yan, Y., Hu, J., Hao, M., Liang, B., Chen, J., Chen, G., Yang, G., et al. (2021) · 中国科学通报：英文版 · doi:10.1016/j.scib.2021.03.023 · Cited by 16

Estimating the age of the subfamily Orthocoronavirinae using host divergence times as calibration ages at two internal nodes

Hayman, D. T. S., & Knox, M. A. (2021) · Virology · doi:10.1016/j.virol.2021.08.004 · Cited by 16

Analysis of rDNA reveals a high genetic diversity of Halophila major in the Wallacea region

Nguyen, X., Nguyen-Nhat, N.-T., Nguyen-Nhat, N.-T., Dao, V.-H., Liao, L. M., & Papenbrock, J. (2021) · PLoS ONE · doi:10.1371/journal.pone.0258956 · Cited by 16

Adding pieces to the puzzle: insights into diversity and distribution patterns of Cumacea (Crustacea: Peracarida) from the deep North Atlantic to the Arctic Ocean

Uhlir, C., Schwentner, M., Meland, K., Kongsrud, J. A., Glenner, H., Brandt, A., Thiel, R., Svavarsson, J., Lörz, A., & Brix, S. (2021) · PeerJ · doi:10.7717/peerj.12379 · Cited by 16

The story of a rock-star: multilocus phylogeny and species delimitation in the starred or roughtail rock agama,Laudakia stellio(Reptilia: Agamidae)

Karameta, E., Lymberakis, P., Grillitsch, H., Ilgaz, Ç., Avcı, A., Kumlutaş, Y., Candan, K., Wagner, P., Sfenthourakis, S., Pafilis, P., et al. (2021) · Zoological Journal of the Linnean Society · doi:10.1093/zoolinnean/zlab107 · Cited by 16

Increasing Taxa Sampling Provides New Insights on the Phylogenetic Relationship Between Eriobotrya and Rhaphiolepis

Dong, Z., Qu, S., Landrein, S., Yu, W., Xin, J., Zhao, W., Song, Y., Tan, Y., & Xin, P. (2022) · Frontiers in Genetics · doi:10.3389/fgene.2022.831206 · Cited by 16

Genomic variation in baboons from central Mozambique unveils complex evolutionary relationships with other Papio species

Santander, C. G., Molinaro, L., Mutti, G., Martínez, F. I., Mathe, J., da Silva, M. J. F., Caldon, M., Oteo‐García, G., Aldeias, V., Archer, W., et al. (2022) · BMC Ecology and Evolution · doi:10.1186/s12862-022-01999-7 · Cited by 17

Towards completing the crocodile newts’ puzzle with all-inclusive phylogeographic resources

Dufresnes, C., & Hernández, A. (2022) · Zoological Journal of the Linnean Society · doi:10.1093/zoolinnean/zlac038 · Cited by 16

The phylogenetic position of ridley's worm lizard reveals the complex biogeographic history of New World insular amphisbaenids

Graboski, R., Grazziotin, F. G., Mott, T., & Rodrigues, M. T. (2022) · Molecular Phylogenetics and Evolution · doi:10.1016/j.ympev.2022.107518 · Cited by 18

Genetic drift drives rapid speciation of an Arctic insular endemic shrew (Sorex pribilofensis)

Wiens, B. J., Combe, F. J., Dickerson, B. R., Divine, L. M., Padula, V. M., Sage, G. K., Talbot, S. L., & Hope, A. G. (2022) · Molecular Ecology · doi:10.1111/mec.16658 · Cited by 14

DNA barcodes reveal population-dependent cryptic diversity and various cases of sympatry of Korean leptonetid spiders (Araneae: Leptonetidae)

Oh, J.-H., Kim, S., & Lee, S. (2022) · Scientific Reports · doi:10.1038/s41598-022-18666-y · Cited by 16

Climate Relicts: Asian Scorpion Family Pseudochactidae Survived Miocene Aridification in Caves of the Annamite Mountains

Loria, S. F., Ehrenthal, V. L., Nguyen, A. D., & Prendini, L. (2022) · Insect Systematics and Diversity · doi:10.1093/isd/ixac028 · Cited by 16

Integrative Taxonomy Approach Reveals Cryptic Diversity within the Phoretic Pseudoscorpion Genus Lamprochernes (Pseudoscorpiones: Chernetidae)

Christophoryová, J., Krajčovičová, K., Šťáhlavský, F., Španiel, S., & Opatová, V. (2023) · Insects · doi:10.3390/insects14020122 · Cited by 16

Genomic Analysis Revealed the International and Domestic Transmission of Carbapenem-Resistant Klebsiella pneumoniae in Chinese Pediatric Patients

Jiang, M., Li, H., Liu, X., Shen, N., Zhou, Y., Song, W., Wang, X., Cao, Q., & Zhou, Z. (2023) · Microbiology Spectrum · doi:10.1128/spectrum.03213-22 · Cited by 16

A tale of two paths: The evolution of mitochondrial recombination in bivalves with doubly uniparental inheritance

Smith, C. H., Pinto, B. J., Kirkpatrick, M., Hillis, D. M., Pfeiffer, J. M., & Havird, J. C. (2023) · Journal of Heredity · doi:10.1093/jhered/esad004 · Cited by 16

Multiple origins of mountain biodiversity in New Zealand's largest plant radiation

Thomas, A. E., Meudt, H. M., Larcombe, M. J., Igea, J., Lee, W. G., Antonelli, A., & Tanentzap, A. J. (2023) · Journal of Biogeography · doi:10.1111/jbi.14589 · Cited by 17

Ancient bears provide insights into Pleistocene ice age refugia in Southeast Alaska

Coelho, F. A. D. S., Gill, S., Tomlin, C., Papavassiliou, M., Farley, S. D., Cook, J. A., Sonsthagen, S. A., Sage, G. K., Heaton, T. H., Talbot, S. L., et al. (2023) · Molecular Ecology · doi:10.1111/mec.16960 · Cited by 18

Wolbachia springs eternal: symbiosis in Collembola is associated with host ecology

Rodrigues, J., Lefoulon, E., Gavotte, L., Perriat‐Sanguinet, M., Makepeace, B. L., Martin, C., & D’Haese, C. A. (2023) · Royal Society Open Science · doi:10.1098/rsos.230288 · Cited by 16

Comparing Mycobacterium tuberculosis transmission reconstruction models from whole genome sequence data

Sobkowiak, B., Romanowski, K., Sekirov, I., Gardy, J. L., & Johnston, J. C. (2023) · Epidemiology and Infection · doi:10.1017/s0950268823000900 · Cited by 20

Diversity and Pathobiology of an Ilarvirus Unexpectedly Detected in Diverse Plants and Global Sequencing Data

Rivarez, M. P. S., Faure, C., Svanella-Dumas, L., Pecman, A., Tušek‐Žnidarič, M., Schönegger, D., Jonghe, K. D., Blouin, A. G., Rasmussen, D. A., Massart, S., et al. (2023) · Phytopathology · doi:10.1094/phyto-12-22-0465-v · Cited by 16

First dated phylogenetic reconstruction of the genus Tamarix (Tamaricaceae): biogeographical implications and hybridization processes in the Mediterranean Basin

Terrones, A., & Juan, A. (2023) · Botanical Journal of the Linnean Society · doi:10.1093/botlinnean/boad025 · Cited by 16

From bites to barcodes: uncovering the hidden diversity of black flies (Diptera: Simuliidae) in Vietnam

Putt, Q. Y., Ya’cob, Z., Adler, P. H., Chen, C. D., Hew, Y. X., Izwan-Anas, N., Lau, K. W., Sofian‐Azirun, M., Pham, X. D., Takaoka, H., et al. (2023) · Parasites & Vectors · doi:10.1186/s13071-023-05892-0 · Cited by 16

Integrative Taxonomic Reappraisal and Evolutionary Biogeography of the Most Diverse Freshwater Mussel Clade from Southeast Asia (Pseudodontini)

Болотов, И. Н., Konopleva, E. S., Vikhrev, I. V., Gofarov, M. Y., Kondakov, A. V., Александрович, Л. А., Soboleva, A. A., Chan, N., Lunn, Z., Win, T., et al. (2023) · Water · doi:10.3390/w15173117 · Cited by 16

Cryptic biodiversity in the commercial diamondback squid Thysanoteuthis rhombus Troschel 1857

Deville, D., Mori, S., Kawai, K., Escánez, A., Macali, A., Lishchenko, F. V., Braid, H. E., Githaiga‐Mwicigi, J., Mohamed, K. S., Bolstad, K. S. R., et al. (2023) · Reviews in Fish Biology and Fisheries · doi:10.1007/s11160-023-09813-3 · Cited by 18

Genomic insights into the Montseny brook newt (Calotriton arnoldi), a Critically Endangered glacial relict

Talavera, A., Palmada‐Flores, M., Burriel‐Carranza, B., Valbuena‐Ureña, E., Mochales‐Riaño, G., Adams, D. C., Tejero‐Cicuéndez, H., Soler‐Membrives, A., Amat, F., Guinart, D., et al. (2023) · iScience · doi:10.1016/j.isci.2023.108665 · Cited by 14

A time-calibrated ‘Tree of Life’ of aquatic insects for knitting historical patterns of evolution and measuring extant phylogenetic biodiversity across the world

García‐Girón, J., Múrria, C., Arnedo, M. A., Bonada‬‬‬‬‬‬‬‬‬‬‬, N., Cañedo‐Argüelles, M., Derka, T., Fernández‐Calero, J. M., Li, Z., de Figueroa, J. M. T., Xie, Z., et al. (2024) · Earth-Science Reviews · doi:10.1016/j.earscirev.2024.104767 · Cited by 17

A new semi‐fossorial thescelosaurine dinosaur from the Cenomanian‐age Mussentuchit Member of the Cedar Mountain Formation, Utah

Avrahami, H. M., Makovicky, P. J., Tucker, R. T., & Zanno, L. E. (2024) · The Anatomical Record · doi:10.1002/ar.25505 · Cited by 16

Insights into the molecular network characteristics of major HIV-1 subtypes in developed Eastern China: a study based on comprehensive molecular surveillance data

Fan, Q., Zhang, J., Pan, X., Ding, X., Xing, H. Q., Feng, Y., Li, X., Zhong, P., Zhao, H., Cheng, W., et al. (2024) · Infection · doi:10.1007/s15010-024-02389-5 · Cited by 16

Circulation of West Nile virus and Usutu virus in birds in Germany, 2021 and 2022

Schopf, F., Sadeghi, B., Bergmann, F., Fischer, D., Rahner, R., Müller, K., Günther, A., Globig, A., Keller, M., Schwehn, R., et al. (2024) · Scandinavian Journal of Infectious Diseases · doi:10.1080/23744235.2024.2419859 · Cited by 16

Tip dating with fossil sites and stratigraphic sequences

King, B., & Rücklin, M. (2020) · PeerJ · doi:10.7717/peerj.9368 · Cited by 16

Molecular Characterization of Porcine Epidemic Diarrhea Virus and Its New Genetic Classification Based on the Nucleocapsid Gene

Kim, S. J., Nguyen, V. G., Huynh, T. M. L., Park, Y. H., Park, B., & Chung, H. (2020) · Viruses · doi:10.3390/v12080790 · Cited by 16

Recent population expansion of longtail tuna Thunnus tonggol (Bleeker, 1851) inferred from the mitochondrial DNA markers

Kasim, N. S., Jaafar, T. N. A. M., Piah, R. M., Arshaad, W. M., Nor, S. A. M., Habib, A., Ghaffar, M. A., Sung, Y. Y., Danish‐Daniel, M., & Tan, M. P. (2020) · PeerJ · doi:10.7717/peerj.9679 · Cited by 18

Skull diversity and evolution in miniaturized amphibians, genus Brachycephalus (Anura: Brachycephalidae)

dos Reis, S. F., Clemente‐Carvalho, R. B. G., dos Santos, C. M. S. D. F. F., Lopes, R. T., Zuben, F. J. V., Laborda, P. R., & Pérez, S. I. (2020) · The Anatomical Record · doi:10.1002/ar.24554 · Cited by 16

The Asian plethodontid salamander preserves historical genetic imprints of recent northern expansion

Jeon, J. Y., Jung, J.-H., Suk, H. Y., Lee, H., & Min, M. (2021) · Scientific Reports · doi:10.1038/s41598-021-88238-z · Cited by 16

Phylogenomics With Hyb-Seq Unravels Korean Hosta Evolution

Yoo, M., Lee, B., Kim, S., & Lim, C. E. (2021) · Frontiers in Plant Science · doi:10.3389/fpls.2021.645735 · Cited by 16

Enlightening the black and white: species delimitation and UNITE species hypothesis testing in the Russula albonigra species complex

Lange, R. D., Adamčík, S., Adamčíková, K., Asselman, P., Borovička, J., Delgat, L., Hampe, F., & Verbeken, A. (2021) · IMA Fungus · doi:10.1186/s43008-021-00064-0 · Cited by 16

Optimizing viral genome subsampling by genetic diversity and temporal distribution (TARDiS) for phylogenetics

Marini, S., Mavian, C. N., Riva, A., Prosperi, M., Salemi, M., & Magalis, B. R. (2021) · Bioinformatics · doi:10.1093/bioinformatics/btab725 · Cited by 16

Phylogenomics of Salvia L. subgenus Calosphace (Lamiaceae)

Lara-Cabrera, S. I., Perez‐Garcia, M. D. L. L., Maya‐Lastra, C. A., Montero-Castro, J. C., Godden, G. T., Cibrián‐Jaramillo, A., Fisher, A. E., & Porter, J. M. (2021) · Frontiers in Plant Science · doi:10.3389/fpls.2021.725900 · Cited by 16

Differential pathogenesis of closely related 2018 Nigerian outbreak clade III Lassa virus isolates

Stein, D. R., Warner, B. M., Audet, J., Soule, G., Siragam, V., Sroga, P., Griffin, B. D., Leung, A., Grolla, A., Tierney, K. J., et al. (2021) · PLoS Pathogens · doi:10.1371/journal.ppat.1009966 · Cited by 16

Joint Inference of Migration and Reassortment Patterns for Viruses with Segmented Genomes

Stolz, U., Stadler, T., Müller, N. F., & Vaughan, T. G. (2021) · Molecular Biology and Evolution · doi:10.1093/molbev/msab342 · Cited by 16

Neotropical niche evolution of Otoba trees in the context of global biogeography of the nutmeg family

Frost, L. A., Santamaría‐Aguilar, D., Singletary, D., & Lagomarsino, L. P. (2021) · Journal of Biogeography · doi:10.1111/jbi.14290 · Cited by 16

Phylogenetic analysis of adaptation in comparative physiology and biomechanics: overview and a case study of thermal physiology in treefrogs

Moen, D. S., Cabrera‐Guzmán, E., Caviedes-Solis, I. W., González‐Bernal, E., & Hanna, A. R. (2022) · Journal of Experimental Biology · doi:10.1242/jeb.243292 · Cited by 16

Synhelminthosporium gen. et sp. nov. and Two New Species of Helminthosporium (Massarinaceae, Pleosporales) from Sichuan Province, China

Chen, Y., Tian, W., Guo, Y., Hugo Madrid, L., & Maharachchikumbura, S. S. N. (2022) · Journal of Fungi · doi:10.3390/jof8070712 · Cited by 16

Taxonomy and phylogeny of cercosporoid ascomycetes on Diospyros spp. with special emphasis on Pseudocercospora spp.

Braun, U., Nakashima, C., Bakhshi, M., Zare, R., Shin, H., Alves, R. F., & Spósito, M. B. (2020) · Fungal Systematics and Evolution · doi:10.3114/fuse.2020.06.06 · Cited by 16

A taxonomic revision of the genus Phrynoglossus in Indochina with the description of a new species and comments on the classification within Occidozyginae (Amphibia, Anura, Dicroglossidae)

Köhler, G., Vargas, J., Than, N. L., Schell, T., Janke, A., Pauls, S. U., & Thammachoti, P. (2021) · Vertebrate Zoology · doi:10.3897/vz.71.e60312 · Cited by 16

Taxonomical Study of Noteworthy Species of Botryosphaeria in Japan

Hattori, Y., Ando, Y., Sasaki, A., Uechi, N., & Nakashima, C. (2021) · Mycobiology · doi:10.1080/12298093.2021.1895486 · Cited by 16

Evolutionary dynamics of the successful expansion of pandemic Vibrio parahaemolyticus ST3 in Latin America

Campbell, A. M., Gavilán, R. G., Marin, M. F. A., Yang, C., Hauton, C., van Aerle, R., & Martínez-Urtaza, J. (2024) · Nature Communications · doi:10.1038/s41467-024-52159-y · Cited by 16

Spatial and temporal transmission dynamics of respiratory syncytial virus in New Zealand before and after the COVID-19 pandemic

Jelley, L., Douglas, J., O’Neill, M. P., Berquist, K., Claasen, A., Wang, J., Utekar, S., Johnston, H., Bocacao, J., Allais, M., et al. (2024) · Nature Communications · doi:10.1038/s41467-024-53998-5 · Cited by 17

Genomic survey of multidrug resistant Salmonella enterica serovar Minnesota clones in chicken products

Huang, J., Alzahrani, K. O., Zhou, G., Alsalman, S. A., Alsufyani, A. T., Alotaibi, N. M., Al-Akeel, S. I., Alajlan, A. A., Mukhtar, L. E., Almansour, A. M., et al. (2025) · npj Antimicrobials and Resistance · doi:10.1038/s44259-025-00077-4 · Cited by 15

Phylogenomics establishes an Early Miocene reconstruction of reef vertebrate diversity

Brownstein, C. D., Harrington, R. C., Alencar, L. R. V., Bellwood, D. R., Choat, J. H., Rocha, L. A., Wainwright, P. C., Tavera, J. J., Burress, E. D., Muñoz, M. M., et al. (2025) · Science Advances · doi:10.1126/sciadv.adu6149 · Cited by 16

Beyond $R_0$: Heterogeneity in secondary infections and probabilistic epidemic forecasting

Hébert‐Dufresne, L., Althouse, B. M., Scarpino, S. V., & Allard, A. (2020) · PubMed Central · doi:10.48550/arxiv.2002.04004 · Cited by 31

Cupriavidus agavae sp. nov., a species isolated from Agave L. rhizosphere in northeast Mexico

Arroyo-Herrera, I., Maldonado-Hernández, J., Rojas‐Rojas, F. U., Meza-Radilla, G., Larios‐Serrato, V., Vásquez-Murrieta, M. S., Whitman, W. B., & Santos, P. E. L. (2020) · INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY · doi:10.1099/ijsem.0.004263 · Cited by 15

Testing the causes of richness patterns in the paleotropics: time and diversification in cycads (Cycadaceae)

Liu, J., Lindström, A. J., Nagalingum, N. S., Wiens, J. J., & Gong, X. (2021) · Ecography · doi:10.1111/ecog.05910 · Cited by 15

Cryptic diversity among populations of Aegla Leach, 1820 (Decapoda: Anomura: Aeglidae) from Tibagi River basin, Paraná state, Brazil, with descriptions of three new species

Marçal, I. C., Páez, F. P., Silva, P. F. D., Souza-Shibatta, L., & Teixeira, G. M. (2021) · Journal of Natural History · doi:10.1080/00222933.2021.1984599 · Cited by 15

Ancient mitochondrial genomes recovered from small vertebrate bones through minimally destructive DNA extraction: Phylogeography of the New Zealand gecko genus Hoplodactylus

Scarsbrook, L., Verry, A. J. F., Walton, K., Hitchmough, R. A., & Rawlence, N. J. (2022) · Molecular Ecology · doi:10.1111/mec.16434 · Cited by 17

The early SARS-CoV-2 epidemic in Senegal was driven by the local emergence of B.1.416 and the introduction of B.1.1.420 from Europe

Perez, L. J., Orf, G. S., Berg, M. G., Rodgers, M. A., Meyer, T. V., Mohaimani, A., Olivo, A., Harris, B., Mowerman, I., Padane, A., et al. (2022) · Virus Evolution · doi:10.1093/ve/veac025 · Cited by 15

Systematics of Lepidothrix manakins (Aves: Passeriformes: Pipridae) using RADcap markers

Moncrieff, A. E., Faircloth, B. C., & Brumfield, R. T. (2022) · Molecular Phylogenetics and Evolution · doi:10.1016/j.ympev.2022.107525 · Cited by 15

Clonality and timing of relapsing colorectal cancer metastasis revealed through whole-genome single-cell sequencing

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Marine-montane transitions coupled with gill and genetic convergence in extant crustacean

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Skyline Fossilized Birth–Death Model is Robust to Violations of Sampling Assumptions in Total-Evidence Dating

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Comparative whole-genome analysis of China and global epidemic Pseudomonas aeruginosa high-risk clones

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Gains and losses of the epiphytic lifestyle in epidendroid orchids: review and new analyses of succulence traits

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Almost half of the Gymnura van Hasselt, 1823 species are unknown: Phylogeographic inference as scissors for cutting the hidden Gordian knot and clarify their conservation status

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Hidden in the sand: Phylogenomics unravel an unexpected evolutionary history for the desert-adapted vipers of the genus Cerastes

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The recent rapid expansion of multidrug resistant Ural lineage Mycobacterium tuberculosis in Moldova

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HIV co-infection is associated with reduced Mycobacterium tuberculosis transmissibility in sub-Saharan Africa

Windels, E. M., Wampande, E. M., Joloba, M. L., Boom, W. H., Goig, G. A., Cox, H. S., Hella, J., Borrell, S., Gagneux, S., Brites, D., et al. (2024) · PLoS Pathogens · doi:10.1371/journal.ppat.1011675 · Cited by 15

Ice-inhabiting species of Bdelloidea Rotifera reveal a pre-Quaternary ancestry in the Arctic cryosphere

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Genome analysis reveals three distinct lineages of the cosmopolitan white shark

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Deep mining reveals the diversity of endogenous viral elements in vertebrate genomes

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TINNiK: inference of the tree of blobs of a species network under the coalescent model

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Host use drives convergent evolution in clownfish

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Evolution is coupled with branching across many granularities of life

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ConvexML: Fast and Accurate Branch Length Estimation under Irreversible Mutation Models, Illustrated through Applications to CRISPR/Cas9-Based Lineage Tracing

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BEAST 2: a software platform for Bayesian evolutionary analysis

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