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Global Patterns of Bacterial Beta-Diversity in Seafloor and Seawater Ecosystems
Open accessAbstract
BACKGROUND: Marine microbial communities have been essential contributors to global biomass, nutrient cycling, and biodiversity since the early history of Earth, but so far their community distribution patterns remain unknown in most marine ecosystems. METHODOLOGY/PRINCIPAL FINDINGS: The synthesis of 9.6 million bacterial V6-rRNA amplicons for 509 samples that span the global ocean's surface to the deep-sea floor shows that pelagic and benthic communities greatly differ, at all taxonomic levels, and share <10% bacterial types defined at 3% sequence similarity level. Surface and deep water, coastal and open ocean, and anoxic and oxic ecosystems host distinct communities that reflect productivity, land influences and other environmental constraints such as oxygen availability. The high variability of bacterial community composition specific to vent and coastal ecosystems reflects the heterogeneity and dynamic nature of these habitats. Both pelagic and benthic bacterial community distributions correlate with surface water productivity, reflecting the coupling between both realms by particle export. Also, differences in physical mixing may play a fundamental role in the distribution patterns of marine bacteria, as benthic communities showed a higher dissimilarity with increasing distance than pelagic communities. CONCLUSIONS/SIGNIFICANCE: This first synthesis of global bacterial distribution across different ecosystems of the World's oceans shows remarkable horizontal and vertical large-scale patterns in bacterial communities. This opens interesting perspectives for the definition of biogeographical biomes for bacteria of ocean waters and the seabed.
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“which are respectively dominant classes in pelagic and benthic marine environments (Zinger et al., 2011).”
From Potential lineage transmission within the active microbiota of the eggs and the nauplii of the shrimp Litopenaeus stylirostris : possible influence of the rearing water and more (2021) · cites this paper as Zinger et al., 2011
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“3 classes previously identified in pelagic environments and marine ecosystems (Giovannoni & Stingl, 2005; Zinger et al., 2011).”
From Potential lineage transmission within the active microbiota of the eggs and the nauplii of the shrimp Litopenaeus stylirostris : possible influence of the rearing water and more (2021) · cites this paper as Zinger et al., 2011
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Metadata
- Authors
- Zinger, L., Amaral-Zettler, L. A., Fuhrman, J. A., Horner-Devine, M. C., Huse, S. M., Welch, D. B. M., Martiny, J. B. H., Sogin, M., Boetius, A., & Ramette, A.
- Affiliations
- Max Planck Institute for Marine Microbiology (DE)
- University of Southern California (US)
- Marine Biological Laboratory (US)
- University of California, Irvine (US)
- Alfred-Wegener-Institut Helmholtz-Zentrum für Polar- und Meeresforschung (DE)
- Corresponding author
- Zinger, Lucie
- Fuhrman, Jed A.
- Huse, Susan M.
- Welch, David B. Mark
- Martiny, Jennifer B. H.
- Sogin, Mitchell
- Ramette, Alban
- ORCID
- Venue
- PLoS ONE
- Publisher
- Public Library of Science (PLoS)
- Published
- 2011-09-08
- Volume
- 6
- Issue
- 9
- Pages
- e24570
- ISSN
- 1932-6203 (ISSN-L)
- PMC
- PMC3169623
- OpenAlex
- W2169157436
- Cited by
- 643
- References
- 79
- Citations by year
- 2026: 29 · 2025: 28 · 2024: 23 · 2023: 34 · 2022: 55 · 2021: 43 · 2020: 48 · 2019: 47 · 2018: 72 · 2017: 57 · 2016: 43 · 2015: 54 · 2014: 44 · 2013: 39 · 2012: 24
- FWCI
- 30.72
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Locations
- PLoS ONE (publishedVersion, cc-by)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- MPG.PuRe (Max Planck Society) (submittedVersion, other-oa)
- Bern Open Repository and Information System (University of Bern) (submittedVersion, cc-by)
- DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
- Helmholtz-Zentrum für Polar-und Meeresforschung (Alfred-Wegener-Institut) (submittedVersion)
- eScholarship (California Digital Library) (submittedVersion, cc-by)
- Max Planck Digital Library (submittedVersion)
- Figshare (submittedVersion, cc-by)
- Open Access CRIS of the University of Bern
- Funders
- Deutsche Forschungsgemeinschaft
- Max-Planck-Gesellschaft
- Leibniz-Gemeinschaft
- Topics
- Physical Sciences › Environmental Science › Ecology › Microbial Community Ecology and Physiology
- Physical Sciences › Earth and Planetary Sciences › Oceanography › Marine Biology and Ecology Research
- Physical Sciences › Environmental Science › Environmental Chemistry › Methane Hydrates and Related Phenomena
- Keywords
- marine bacteria, benthic-pelagic coupling, seafloor ecosystems, deep-sea floor, hydrothermal vents, coastal ecosystems, surface water productivity, particle export, ocean mixing, bacterial biogeography
- MeSH terms
- Bacteria, Classification, Oceans and Seas, Phylogeny, Seawater, Water Microbiology, Cluster Analysis, Databases, Factual, Ecosystem, Biomass, Computational Biology, Biodiversity
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
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