The DOI matches its Crossref record; 3 of the 3 references it cites were found in a registry or an index.
NGS QC Toolkit: A Toolkit for Quality Control of Next Generation Sequencing Data
Open accessAbstract
Next generation sequencing (NGS) technologies provide a high-throughput means to generate large amount of sequence data. However, quality control (QC) of sequence data generated from these technologies is extremely important for meaningful downstream analysis. Further, highly efficient and fast processing tools are required to handle the large volume of datasets. Here, we have developed an application, NGS QC Toolkit, for quality check and filtering of high-quality data. This toolkit is a standalone and open source application freely available at http://www.nipgr.res.in/ngsqctoolkit.html. All the tools in the application have been implemented in Perl programming language. The toolkit is comprised of user-friendly tools for QC of sequencing data generated using Roche 454 and Illumina platforms, and additional tools to aid QC (sequence format converter and trimming tools) and analysis (statistics tools). A variety of options have been provided to facilitate the QC at user-defined parameters. The toolkit is expected to be very useful for the QC of NGS data to facilitate better downstream analysis.
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Cites
RNA-Seq: a revolutionary tool for transcriptomics
Wang, Z., Gerstein, M., & Snyder, M. (2009) · Nature Reviews Genetics · doi:10.1038/nrg2484 · Cited by 13,174
SolexaQA: at-a-glance quality assessment of Illumina second-generation sequencing data
Cox, M. P., Peterson, D. A., & Biggs, P. J. (2010) · BMC Bioinformatics · doi:10.1186/1471-2105-11-485 · Cited by 1,357
Garg, R., Patel, R. K., Tyagi, A. K., & Jain, M. (2011) · DNA Research · doi:10.1093/dnares/dsq028 · Cited by 457
Self-citation
Cited by
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Chen, S. (2023) · iMeta · doi:10.1002/imt2.107 · Cited by 2,166
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Okonechnikov, K., Conesa, A., & García-Alcalde, F. (2016) · Bioinformatics · doi:10.1093/bioinformatics/btv566 · Cited by 2,145
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Han, T., Goralski, M., Gaskill, N., Capota, E., Kim, J., Ting, T. C., Xie, Y., Williams, N. S., & Nijhawan, D. (2017) · Science · doi:10.1126/science.aal3755 · Cited by 762
High-fat diet alters gut microbiota physiology in mice
Daniel, H., Gholami, A. M., Berry, D., Desmarchelier, C., Hahne, H., Loh, G., Mondot, S., Lepage, P., Rothballer, M., Walker, A., et al. (2014) · The ISME Journal · doi:10.1038/ismej.2013.155 · Cited by 678
Reconstitution in vitro of the entire cycle of the mouse female germ line
Hikabe, O., Hamazaki, N., Nagamatsu, G., Obata, Y., Hirao, Y., Hamada, N., Shimamoto, S., Imamura, T., Nakashima, K., Saitou, M., et al. (2016) · Nature · doi:10.1038/nature20104 · Cited by 601
Metadata
- Authors
- Patel, R. K., & Jain, M.
- Venue
- PLoS ONE
- Publisher
- Public Library of Science (PLoS)
- Published
- 2012-02-01
- Volume
- 7
- Issue
- 2
- Pages
- e30619
- ISSN
- 1932-6203 (ISSN-L)
- OpenAlex
- W1968458420
- Cited by
- 2,917
- References
- 3
- FWCI
- 37.06
- Type
- journal article
- Language
- en
- Open access
- gold
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