Cited by 62

The DOI matches its Crossref record; 2 of the 2 references it cites were found in a registry or an index.

Complete Mitochondrial Genomes Reveal Neolithic Expansion into Europe

Fu, Qiaomei, Rudan, Pavao, Pääbo, Svante, Krause, Johannes·2012·PLoS ONE

Overview

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Integrity signals

Registry

Crossref · 10.1371/journal.pone.0032473

Cites

2 of 2 references verified0 citation errors · 0 not checkable

Statistics

Figures

Figure 1 Haplogroup frequencies of hunter-gatherer and early farmer populations based on short segments of the mtDNA (A); Haplogroup frequencies of three contemporary European complete mtDNA datasets (B).
Figure 1 Haplogroup frequencies of hunter-gatherer and early farmer populations based on short segments of the mtDNA (A); Haplogroup frequencies of three contemporary European complete mtDNA datasets (B).CC0 · PubMed Central
Figure 2 Pairwise nucleotide differences for all U- type and H- type mtDNAs in three contemporary European datasets.
Figure 2 Pairwise nucleotide differences for all U- type and H- type mtDNAs in three contemporary European datasets.CC0 · PubMed Central
Figure 3 Estimated effective population size (Ne) of type H (red) and type U mtDNA haplotypes (blue) for the complete European mtDNA dataset as well as for the sampled dataset. The x-axis shows time in years before present, the y axis the effective population size Ne. The center line represents the mean of Ne estimate, upper and lower lines are the 95% posterior density intervals. We assumed a mutation rate of the coding regions of 1.691×10−8 substitutions per site and year [30]–[32].
Figure 3 Estimated effective population size (Ne) of type H (red) and type U mtDNA haplotypes (blue) for the complete European mtDNA dataset as well as for the sampled dataset. The x-axis shows time in years before present, the y axis the effective population size Ne. The center line represents the mean of Ne estimate, upper and lower lines are the 95% posterior density intervals. We assumed a mutation rate of the coding regions of 1.691×10−8 substitutions per site and year [30]–[32].CC0 · PubMed Central

Verification

Claims the paper makes

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

The self-check needs the paper’s full text.

Citations

Cites

Show all 2 references

Research works printed but not linked: 36

  1. M Zvelebil, 1989, On the transition to farming in Europe, or what was spreading with the Neolithic: a relay to Ammerman., Antiqutiy, 63, 379, 10.1017/S0003598X00076110 · DOI
  2. ML Sampietro, 2007, Palaeogenetic evidence supports a dual model of Neolithic spreading into Europe., Proceedings of the Royal Society B-Biological Sciences, 274, 2161, 10.1098/rspb.2007.0465 · DOI
  3. B Bramanti, 2009, Genetic Discontinuity Between Local Hunter-Gatherers and Central Europe's First Farmers., Science, 326, 137, 10.1126/science.1176869 · DOI · Paper page
  4. W Haak, 2010, Ancient DNA from European early neolithic farmers reveals their near eastern affinities., PLoS Biol, 8, e1000536, 10.1371/journal.pbio.1000536 · DOI · Paper page
  5. MF Deguilloux, 2011, News From the West: Ancient DNA From a French Megalithic Burial Chamber., American Journal of Physical Anthropology, 144, 108, 10.1002/ajpa.21376 · DOI
  6. M Lacan, 2011, Ancient DNA reveals male diffusion through the Neolithic Mediterranean route., Proceedings of the National Academy of Sciences of the United States of America, 108, 9788, 10.1073/pnas.1100723108 · DOI
  7. C Gamba, 2012, Ancient DNA from an Early Neolithic Iberian population supports a pioneer colonization by first farmers., Mol Ecol, 21, 45, 10.1111/j.1365-294X.2011.05361.x · DOI
  8. J Krause, 2010, A complete mtDNA genome of an early modern human from Kostenki, Russia., Curr Biol, 20, 231, 10.1016/j.cub.2009.11.068 · DOI · Paper page
  9. M Pala, 2009, Mitochondrial haplogroup U5b3: a distant echo of the epipaleolithic in Italy and the legacy of the early Sardinians., American Journal of Human Genetics, 84, 814, 10.1016/j.ajhg.2009.05.004 · DOI
  10. L Pereira, 2007, No evidence for an mtDNA role in sperm motility: Data from complete sequencing of asthenozoospermic males., Molecular Biology and Evolution, 24, 868, 10.1093/molbev/msm004 · DOI
  11. V Carelli, 2006, Haplogroup effects and recombination of mitochondrial DNA: Novel clues from the analysis of Leber hereditary optic neuropathy pedigrees., American Journal of Human Genetics, 78, 564, 10.1086/501236 · DOI
  12. B Malyarchuk, 2008, Mitochondrial DNA Phylogeny in Eastern and Western Slavs., Molecular Biology and Evolution, 25, 1651, 10.1093/molbev/msn114 · DOI
  13. C Herrnstadt, 2002, Reduced-median-network analysis of complete mitochondrial DNA coding-region sequences for the major African, Asian, and European haplogroups., American Journal of Human Genetics, 70, 1152, 10.1086/339933 · DOI
  14. AR Rogers, 1992, Population growth makes waves in the distribution of pairwise genetic differences., Molecular Biology and Evolution, 9, 552
  15. QD Atkinson, 2008, mtDNA Variation Predicts Population Size in Humans and Reveals a Major Southern Asian Chapter in Human Prehistory., Molecular Biology and Evolution, 25, 468, 10.1093/molbev/msm277 · DOI
  16. K Tambets, 2004, The Western and Eastern Roots of the Saami–the Story of Genetic “Outliers” Told by Mitochondrial DNA and Y Chromosomes., The American Journal of Human Genetics, 74, 661, 10.1086/383203 · DOI · Paper page
  17. K Tamura, 2007, MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0., Molecular Biology and Evolution, 24, 1596, 10.1093/molbev/msm092 · DOI
  18. A Drummond, 2007, BEAST: Bayesian evolutionary analysis by sampling trees., BMC Evolutionary Biology, 7, 214, 10.1186/1471-2148-7-214 · DOI
  19. D Posada, 1998, MODELTEST: testing the model of DNA substitution., Bioinformatics, 14, 817, 10.1093/bioinformatics/14.9.817 · DOI · Paper page
  20. MA Newton, 1994, Approximate Bayesian-Inference with the Weighted Likelihood Bootstrap., Journal of the Royal Statistical Society Series B-Methodological, 56, 3, 10.1111/j.2517-6161.1994.tb01956.x · DOI
  21. AJ Drummond, 2007, BEAST: Bayesian evolutionary analysis by sampling trees., BMC Evol Biol, 7, 214, 10.1186/1471-2148-7-214 · DOI
  22. SY Ho, 2005, Time dependency of molecular rate estimates and systematic overestimation of recent divergence times., Molecular Biology and Evolution, 22, 1561, 10.1093/molbev/msi145 · DOI
  23. J Friedlaender, 2005, Expanding Southwest Pacific mitochondrial haplogroups P and Q., Molecular Biology and Evolution, 22, 1506, 10.1093/molbev/msi142 · DOI · Paper page
  24. A Schonberg, 2011, High-throughput sequencing of complete human mtDNA genomes from the Caucasus and West Asia: high diversity and demographic inferences., Eur J Hum Genet
  25. S Finnilä, 2001, Phylogenetic Network for European mtDNA., The American Journal of Human Genetics, 68, 1475, 10.1086/320591 · DOI
  26. R Pello, 2008, Mitochondrial DNA background modulates the assembly kinetics of OXPHOS complexes in a cellular model of mitochondrial disease., Hum Mol Genet, 17, 4001, 10.1093/hmg/ddn303 · DOI
  27. G Gasparre, 2007, Disruptive mitochondrial DNA mutations in complex I subunits are markers of oncocytic phenotype in thyroid tumors., Proc Natl Acad Sci U S A, 104, 9001, 10.1073/pnas.0703056104 · DOI
  28. C Fraumene, 2006, High Resolution Analysis and Phylogenetic Network Construction Using Complete mtDNA Sequences in Sardinian Genetic Isolates., Molecular Biology and Evolution, 23, 2101, 10.1093/molbev/msl084 · DOI
  29. A Achilli, 2004, The molecular dissection of mtDNA haplogroup H confirms that the Franco-Cantabrian glacial refuge was a major source for the European gene pool., American Journal of Human Genetics, 75, 910, 10.1086/425590 · DOI
  30. DM Behar, 2008, Counting the founders: the matrilineal genetic ancestry of the Jewish Diaspora., PLoS One, 3, e2062, 10.1371/journal.pone.0002062 · DOI
  31. H Ennafaa, 2009, Mitochondrial DNA haplogroup H structure in North Africa., BMC Genet, 10, 8, 10.1186/1471-2156-10-8 · DOI
  32. N Maca-Meyer, 2001, Major genomic mitochondrial lineages delineate early human expansions., BMC Genet, 2, 13, 10.1186/1471-2156-2-13 · DOI
  33. V Álvarez-Iglesias, 2009, New Population and Phylogenetic Features of the Internal Variation within Mitochondrial DNA Macro-Haplogroup R0., PLoS One, 4, e5112, 10.1371/journal.pone.0005112 · DOI
  34. A Maasz, 2008, Phenotypic variants of the deafness-associated mitochondrial DNA A7445G mutation., Curr Med Chem, 15, 1257, 10.2174/092986708784534910 · DOI
  35. F Brisighelli, 2009, The Etruscan timeline: a recent Anatolian connection., Eur J Hum Genet, 17, 693, 10.1038/ejhg.2008.224 · DOI
  36. A Achilli, 2005, Saami and Berbers An Unexpected Mitochondrial DNA Link., American Journal of Human Genetics, 76, 883, 10.1086/430073 · DOI · Paper page

Cited by

See all 62

Metadata

Authors
Fu, Q., Rudan, P., Pääbo, S., & Krause, J.
Venue
PLoS ONE
Published
2012-03-13
Volume
7
Issue
3
Pages
e32473
ISSN
1932-6203
Cited by
62
References
2
Language
en

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review

How to cite

Cite CoChat for the checks on this page, and the paper for its own findings.

This page
CoChat. (2026). Citation check: Complete Mitochondrial Genomes Reveal Neolithic Expansion into Europe. https://app.cochat.ai/papers/10.1371/journal.pone.0032473
The paper
Fu, Q., Rudan, P., Pääbo, S., & Krause, J. (2012). Complete Mitochondrial Genomes Reveal Neolithic Expansion into Europe. PLoS ONE. https://doi.org/10.1371/journal.pone.0032473