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Afghanistan's Ethnic Groups Share a Y-Chromosomal Heritage Structured by Historical Events

Haber, Marc, Platt, Daniel E., Ashrafian Bonab, Maziar, Youhanna, Sonia C., Soria-Hernanz, David F., Martínez-Cruz, Begoña, Douaihy, Bouchra, Ghassibe-Sabbagh, Michella, Rafatpanah, Hoshang, Ghanbari, Mohsen, Whale, John, Balanovsky, Oleg, Wells, R. Spencer, Comas, David, Tyler-Smith, Chris, Zalloua, Pierre A., The Genographic Consortium·2012·PLoS ONE
DOI 10.1371/journal.pone.0034288PMC PMC3314501
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Figure 1 PCA derived from Y-chromosomal haplogroup frequencies. The two leading principal components display the variance. The superimposed biplot shows the contribution of each haplogroup as grey component loading vectors.
Figure 1 PCA derived from Y-chromosomal haplogroup frequencies. The two leading principal components display the variance. The superimposed biplot shows the contribution of each haplogroup as grey component loading vectors.CC BY · PubMed Central
Figure 2 Population genetic structure vs geography. Genetic barriers (A) and MDS plot (B) based on the ΦST's distances between populations derived from Y-STR data.
Figure 2 Population genetic structure vs geography. Genetic barriers (A) and MDS plot (B) based on the ΦST's distances between populations derived from Y-STR data.CC BY · PubMed Central
Figure 3 Composite BATWING population splitting. The composite tree is constructed from data sets described in the text, based on the results displayed in Table S6, with a pruned leading topology and averaged times. Numbers indicate branch lengths measured in thousand years.
Figure 3 Composite BATWING population splitting. The composite tree is constructed from data sets described in the text, based on the results displayed in Table S6, with a pruned leading topology and averaged times. Numbers indicate branch lengths measured in thousand years.CC BY · PubMed Central

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Research works printed but not linked: 44

  1. L Dupree, 1964, Prehistoric Archeological Surveys and Excavations in Afghanistan: 1959–1960 and 1961–1963., Science, 146, 638, 10.1126/science.146.3644.638 · DOI
  2. L Dupree, 1980, Afghanistan, 10.1515/9781400858910 · DOI
  3. A Berti, 2005, Autosomal STR frequencies in Afghanistan population., J Forensic Sci, 50, 1494, 10.1520/JFS2005237 · DOI
  4. J Di Cristofaro, 2012, Genetic data of 15 STR loci in five populations from Afghanistan., Forensic Sci Int Genet, 6, e44, 10.1016/j.fsigen.2011.03.004 · DOI
  5. H Lacau, 2011, Y-STR profiling in two Afghanistan populations., Leg Med (Tokyo), 13, 103, 10.1016/j.legalmed.2010.11.004 · DOI
  6. YD Alakoc, 2010, Y-chromosome and autosomal STR diversity in four proximate settlements in Central Anatolia., Forensic Sci Int Genet, 4, e135, 10.1016/j.fsigen.2010.01.016 · DOI
  7. C Cinnioglu, 2004, Excavating Y-chromosome haplotype strata in Anatolia., Hum Genet, 114, 127, 10.1007/s00439-003-1031-4 · DOI · Paper page
  8. M El-Sibai, 2009, Geographical structure of the Y-chromosomal genetic landscape of the Levant: a coastal-inland contrast., Ann Hum Genet, 73, 568, 10.1111/j.1469-1809.2009.00538.x · DOI
  9. M Haber, 2011, Influences of history, geography, and religion on genetic structure: the Maronites in Lebanon., Eur J Hum Genet, 19, 334, 10.1038/ejhg.2010.177 · DOI · Paper page
  10. PA Zalloua, 2008, Identifying genetic traces of historical expansions: Phoenician footprints in the Mediterranean., Am J Hum Genet, 83, 633, 10.1016/j.ajhg.2008.10.012 · DOI
  11. S Sengupta, 2006, Polarity and temporality of high-resolution y-chromosome distributions in India identify both indigenous and exogenous expansions and reveal minor genetic influence of Central Asian pastoralists., Am J Hum Genet, 78, 202, 10.1086/499411 · DOI · Paper page
  12. B Yadav, 2011, Haplotype diversity of 17 Y-chromosomal STRs in Saraswat Brahmin Community of North India., Forensic Sci Int Genet, 5, e63, 10.1016/j.fsigen.2010.09.012 · DOI
  13. K Balamurugan, 2010, Y chromosome STR allelic and haplotype diversity in five ethnic Tamil populations from Tamil Nadu, India., Leg Med (Tokyo), 12, 265, 10.1016/j.legalmed.2010.05.008 · DOI
  14. K Thangaraj, 2010, The influence of natural barriers in shaping the genetic structure of Maharashtra populations., PLoS One, 5, e15283, 10.1371/journal.pone.0015283 · DOI
  15. Y Xue, 2006, Male demography in East Asia: a north-south contrast in human population expansion times., Genetics, 172, 2431, 10.1534/genetics.105.054270 · DOI
  16. O Balanovsky, 2011, Parallel Evolution of Genes and Languages in the Caucasus Region., Mol Biol Evol
  17. L Roewer, 2008, Analysis of Y chromosome STR haplotypes in the European part of Russia reveals high diversities but non-significant genetic distances between populations., Int J Legal Med, 122, 219, 10.1007/s00414-007-0222-2 · DOI · Paper page
  18. E Bosch, 2006, Paternal and maternal lineages in the Balkans show a homogeneous landscape over linguistic barriers, except for the isolated Aromuns., Ann Hum Genet, 70, 459, 10.1111/j.1469-1809.2005.00251.x · DOI
  19. K Rebala, 2011, Forensic analysis of polymorphism and regional stratification of Y-chromosomal microsatellites in Belarus., Forensic Sci Int Genet, 5, e17, 10.1016/j.fsigen.2009.10.011 · DOI
  20. A Volgyi, 2009, Hungarian population data for 11 Y-STR and 49 Y-SNP markers., Forensic Sci Int Genet, 3, e27, 10.1016/j.fsigen.2008.04.006 · DOI
  21. L Kovatsi, 2009, Population genetics of Y-chromosome STRs in a population of Northern Greeks., Forensic Sci Int Genet, 4, e21, 10.1016/j.fsigen.2009.01.001 · DOI
  22. C Batini, 2011, Signatures of the pre-agricultural peopling processes in sub-Saharan Africa as revealed by the phylogeography of early Y chromosome lineages., Mol Biol Evol
  23. V Gomes, 2010, Digging deeper into East African human Y chromosome lineages., Hum Genet, 127, 603, 10.1007/s00439-010-0808-5 · DOI
  24. L Gusmao, 2006, DNA Commission of the International Society of Forensic Genetics (ISFG): an update of the recommendations on the use of Y-STRs in forensic analysis., Forensic Sci Int, 157, 187, 10.1016/j.forsciint.2005.04.002 · DOI
  25. I Jolliffe, 1986, Principal Coponents Analysis, Second Edition
  26. JB Kruskal, 1964, Multidimensional scaling by optimizing goodness of fit to a nonmetric hypothesis., Psychometrika, 29, 1, 10.1007/BF02289565 · DOI
  27. L Excoffier, 2005, Arlequin (version 3.0): An integrated software package for population genetics data analysis., Evol Bioinform Online, 1, 47, 10.1177/117693430500100003 · DOI
  28. M Monmonier, 1973, Maximum-difference barriers: An alternative numerical regionalization method., Geographical Analysis, 245, 10.1111/j.1538-4632.1973.tb01011.x · DOI
  29. F Manni, 2004, Geographic patterns of (genetic, morphologic, linguistic) variation: How barriers can be detected by using Monmonier's algorithm., Human Biology, 76, 173, 10.1353/hub.2004.0034 · DOI
  30. L Excoffier, 1992, Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data., Genetics, 131, 479, 10.1093/genetics/131.2.479 · DOI · Paper page
  31. HJ Bandelt, 1995, Mitochondrial portraits of human populations using median networks., Genetics, 141, 743, 10.1093/genetics/141.2.743 · DOI
  32. IJ Wilson, 2003, Inferences from DNA data: population histories, evolutionary processes and forensic match probabilities., Journal of the Royal Statistical Society A, 166, part 2, 155, 10.1111/1467-985X.00264 · DOI
  33. LA Zhivotovsky, 2004, The effective mutation rate at Y chromosome short tandem repeats, with application to human population-divergence time., Am J Hum Genet, 74, 50, 10.1086/380911 · DOI
  34. LA Zhivotovsky, 2006, Difference between evolutionarily effective and germ line mutation rate due to stochastically varying haplogroup size., Mol Biol Evol, 23, 2268, 10.1093/molbev/msl105 · DOI
  35. E Heyer, 2009, Genetic diversity and the emergence of ethnic groups in Central Asia., BMC Genet, 10, 49, 10.1186/1471-2156-10-49 · DOI · Paper page
  36. T Zerjal, 2002, A genetic landscape reshaped by recent events: Y-chromosomal insights into central Asia., Am J Hum Genet, 71, 466, 10.1086/342096 · DOI · Paper page
  37. RS Wells, 2001, The Eurasian heartland: a continental perspective on Y-chromosome diversity., Proc Natl Acad Sci U S A, 98, 10244, 10.1073/pnas.171305098 · DOI · Paper page
  38. R Chaix, 2004, The genetic or mythical ancestry of descent groups: lessons from the Y chromosome., Am J Hum Genet, 75, 1113, 10.1086/425938 · DOI · Paper page
  39. A Perez-Lezaun, 1999, Sex-specific migration patterns in Central Asian populations, revealed by analysis of Y-chromosome short tandem repeats and mtDNA., Am J Hum Genet, 65, 208, 10.1086/302451 · DOI · Paper page
  40. B Martinez-Cruz, 2011, In the heartland of Eurasia: the multilocus genetic landscape of Central Asian populations., Eur J Hum Genet, 19, 216, 10.1038/ejhg.2010.153 · DOI
  41. PA Underhill, 2010, Separating the post-Glacial coancestry of European and Asian Y chromosomes within haplogroup R1a., Eur J Hum Genet, 18, 479, 10.1038/ejhg.2009.194 · DOI · Paper page
  42. O Semino, 2000, The genetic legacy of Paleolithic Homo sapiens sapiens in extant Europeans: a Y chromosome perspective., Science, 290, 1155, 10.1126/science.290.5494.1155 · DOI
  43. S Firasat, 2007, Y-chromosomal evidence for a limited Greek contribution to the Pathan population of Pakistan., Eur J Hum Genet, 15, 121, 10.1038/sj.ejhg.5201726 · DOI
  44. H Emadi, 2005, Culture and customs of Afghanistan, 10.5040/9798400635168 · DOI

Cited by

Metadata

Authors
Haber, M., Platt, D. E., Ashrafian Bonab, M., Youhanna, S. C., Soria-Hernanz, D. F., Martínez-Cruz, B., Douaihy, B., Ghassibe-Sabbagh, M., Rafatpanah, H., Ghanbari, M., Whale, J., Balanovsky, O., Wells, R. S., Comas, D., Tyler-Smith, C., Zalloua, P. A., & The Genographic Consortium
Venue
PLoS ONE
Publisher
Public Library of Science (PLoS)
Published
2012-03-28
Volume
7
Issue
3
Pages
e34288
ISSN
1932-6203
DOI
10.1371/journal.pone.0034288
PMC
PMC3314501
Cited by
46
References
1
Language
en
Licence
creativecommons.org/licenses/by/4.0/ (unspecified)

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