Cross-Contamination of a UROtsa Stock with T24 Cells – Molecular Comparison of Different Cell Lines and Stocks
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BACKGROUND: UROtsa is an authentic, immortalized human urothelial cell line that is used to study the effects of metals and other toxic substances, mostly in the context of bladder cancer carcinogenesis. Unusual properties on the molecular level of a provided UROtsa cell line stock prompted us to verify its identity. METHODS: UROtsa cell line stocks from different sources were tested on several molecular levels and compared with other cell lines. MicroRNA and mRNA expression was determined by Real-Time PCR. Chromosome numbers were checked and PCR of different regions of the large T-antigen was performed. DNA methylation of RARB, PGR, RASSF1, CDH1, FHIT, ESR1, C1QTNF6, PTGS2, SOCS3, MGMT, and LINE1 was analyzed by pyrosequencing and compared with results from the cell lines RT4, T24, HeLa, BEAS-2B, and HepG2. Finally, short tandem repeat (STR) profiling was applied. RESULTS: All tested UROtsa cell line stocks lacked large T-antigen. STR analysis unequivocally identified our main UROtsa stock as the bladder cancer cell line T24, which was different from two authentic UROtsa stocks that served as controls. Analysis of DNA methylation patterns and RNA expression confirmed their differences. Methylation pattern and mRNA expression of the contaminating T24 cell line showed moderate changes even after long-term culture of up to 56 weeks, whereas miRNAs and chromosome numbers varied markedly. CONCLUSIONS: It is important to check the identity of cell lines, especially those that are not distributed by major cell banks. However, for some cell lines STR profiles are not available. Therefore, new cell lines should either be submitted to cell banks or at least their STR profile determined and published as part of their initial characterization. Our results should help to improve the identification of UROtsa and other cells on different molecular levels and provide information on the use of urothelial cells for long-term experiments.
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The bladder cancer cell line T24 was established in 1972 and has contributed to several cell line cross-contamination.
“The bladder cancer cell line T24 was established in 1972 and has contributed to several cell line cross-contamination [20, 21].”
From Investigation of Cross-Contamination and Misidentification of 278 Widely Used Tumor Cell Lines (2017) · cites this paper as [20]
The Discussion says T24 was established in 1973, not 1972. The Discussion and Introduction support the other part of the claim: they describe T24 as a frequent source of cell-line contamination and identify multiple affected lines. (LLM, conf=0.90)
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Zhao, F. L. (2014) · UA Campus Repository (The University of Arizona)
KAHYA, H., & Karaduman, T. (2022) · İstanbul Gelişim Üniversitesi Sağlık Bilimleri Dergisi · doi:10.38079/igusabder.1114239
Hua, X., Zou, R., Bai, X., Yang, Y., Lu, J., & Huang, C. (2023) · BMC Biology · doi:10.1186/s12915-023-01683-2
Genomic Response in Human Urothelial Cells Exposed Chronically to Monomethylarsonous Acid
Medeiros, M. K. (2013) · UA Campus Repository (The University of Arizona)
- Authors
- Johnen, G., Rozynek, P., von der Gathen, Y., Bryk, O., Zdrenka, R., Johannes, C., Weber, D. G., Igwilo-Okuefuna, O., Raiko, I., Hippler, J., Brüning, T., & Dopp, E.
- Affiliations
- Institute for Prevention and Occupational Medicine (DE)
- Essen University Hospital (DE)
- University of Duisburg-Essen (DE)
- Corresponding author
- Johnen, Georg
- Venue
- PLoS ONE
- Publisher
- Public Library of Science (PLoS)
- Published
- 2013-05-17
- Volume
- 8
- Issue
- 5
- Pages
- e64139
- ISSN
- 1932-6203 (ISSN-L)
- PMC
- PMC3656924
- OpenAlex
- W2003173831
- Cited by
- 17
- References
- 78
- Citations by year
- 2023: 1 · 2022: 2 · 2021: 1 · 2018: 2 · 2017: 1 · 2016: 3 · 2015: 2 · 2014: 3 · 2013: 1 · 2012: 1
- FWCI
- 1.34
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Locations
- PLoS ONE (publishedVersion, cc-by)
- Europe PMC (PubMed Central) (publishedVersion, cc-by)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
- Figshare (submittedVersion, cc-by)
- Funders
- Deutsche Forschungsgemeinschaft
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Epigenetics and DNA Methylation
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Cancer Research › Carcinogens and Genotoxicity Assessment
- Health Sciences › Medicine › Surgery › Bladder and Urothelial Cancer Treatments
- Keywords
- T24 cells, cell line cross-contamination, cell line authentication, urothelial cell lines, DNA methylation, microRNA expression, mRNA expression, short tandem repeat profiling, large T antigen, chromosome number, bladder cancer
- MeSH terms
- Antigens, Viral, Tumor, Cell Line, Humans, RNA, Messenger, Sequence Analysis, DNA, Microsatellite Repeats, DNA Methylation, Urothelium, MicroRNAs, Cell Line, Tumor, DNA Contamination, Real-Time Polymerase Chain Reaction
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