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Identification and Functional Analysis of Genome Mutations in a Fluoride-Resistant Streptococcus mutans Strain
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In a fluoride-resistant derivative of S. mutans UA159, mutations in the promoter region 5′ to 1290 contribute to constitutive expression of ORF 1290 and other genes in the operon including ORF 1289.
“in a fluoride-resistant derivative of S. mutans UA159, mutations in the promoter region 5′ to 1290 contribute to constitutive expression of ORF 1290 and other genes in the operon including ORF 1289 (53).”
From Fluoride export is required for the competitive fitness of pathogenic microorganisms in dental biofilm models (2024) · cites this paper as [53]
The gene encoding chorismate mutase is one of the most common genes in fluoride exporter gene neighborhoods, and its expression is upregulated in fluoride-resistant S. mutans together with the fluoride exporters in the same operon.
“The gene encoding chorismate mutase, a key enzyme in the biosynthesis of aromatic amino acids, is one of the most common genes in fluoride exporter gene neighborhoods67, and its expression is upregulated in fluoride-resistant S. mutans together with the fluoride exporters in the same operon91.”
From The link between ancient microbial fluoride resistance mechanisms and bioengineering organofluorine degradation or synthesis (2024) · cites this paper as [91]
In fluoride-resistant S. mutans, pyruvate kinase is heavily mutated.
“In this same fluoride-resistant S. mutans strain, pyruvate kinase, the enzyme that directs PEP towards pyruvate oxidation and the TCA cycle, is heavily mutated91, suggesting that other PEP-consuming biosynthetic pathways, such as aromatic amino acid production, might be favored under fluoride stress.”
From The link between ancient microbial fluoride resistance mechanisms and bioengineering organofluorine degradation or synthesis (2024) · cites this paper as [91]
A fluoride-resistant strain of S. mutans exhibits constitutive expression of CLCF genes, and a single nucleotide polymorphism in the intergenic region 5′ to the operon was linked to this mechanism.
“A fluoride-resistant strain of S. mutans exhibits a constitutive expression of the CLCF genes, and a single nucleotide polymorphism in the intergenic region 5′ to the operon was linked to this mechanism91.”
From The link between ancient microbial fluoride resistance mechanisms and bioengineering organofluorine degradation or synthesis (2024) · cites this paper as [91]
Constitutive expression of fluoride exporters is one naturally evolved response that improves bacterial fluoride tolerance.
“Constitutive expression of fluoride exporters is one naturally evolved response that improves bacterial fluoride tolerance91.”
From The link between ancient microbial fluoride resistance mechanisms and bioengineering organofluorine degradation or synthesis (2024) · cites this paper as [91]
Genes encoding proteins in the CLCF clade are overexpressed in fluoride-resistant Streptococcus mutans.
“Genes encoding proteins in the CLCF clade are overexpressed in fluoride-resistance Streptococcus mutans (47)”
From Membrane exporters of fluoride ion (2021) · cites this paper as [47]
Some bacteria have evolved protective mechanisms of fluoride resistance.
“Fortunately, some bacteria have evolved protective mechanisms of fluoride resistance (Chouhan et al., 2012; Liao et al., 2015; Mukherjee et al., 2017; Chellaiah et al., 2021), and these systems would need to be very effective to protect the cell while biodegrading even low μM levels of polyfluorinated compounds.”
From Nothing lasts forever: understanding microbial biodegradation of polyfluorinated compounds and perfluorinated alkyl substances (2022) · cites this paper as Liao et al., 2015
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Research works printed but not linked: 43
- BT Amaechi, 2013, Remineralization of artificial enamel lesions by theobromine, Caries Res, 47, 399, 10.1159/000348589 · DOI
- JM Birkeland, 1978, Caries-preventive fluoride mouthrinses, Caries Res, 12, 38, 10.1159/000260364 · DOI
- OB Dirks, 1978, Caries-preventive water fluoridation, Caries Res, 12, 7, 10.1159/000260359 · DOI
- RJ Lynch, 2012, Remineralization agents—new and effective or just marketing hype?, Adv Dent Res, 24, 63, 10.1177/0022034512454295 · DOI
- JM Ten Cate, 2004, Fluorides in caries prevention and control: empiricism or science, Caries Res, 38, 254, 10.1159/000077763 · DOI
- JL Streckfuss, 1980, Fluoride resistance and adherence of selected strains of Streptococcus mutans to smooth surfaces after exposure to fluoride, J Dent Res, 59, 151, 10.1177/00220345800590021501 · DOI
- C Van Loveren, 1991, In vitro demineralization of enamel by F-sensitive and F-resistant mutans streptococci in the presence of 0, 0.05, or 0.5 mmol/L NaF, J Dent Res, 70, 1491, 10.1177/00220345910700120401 · DOI
- IR Hamilton, 1969, Growth characteristics of adapted and ultraviolet-induced mutants of Streptococcus salivarius resistant to sodium fluoride, Can J Microbiol, 15, 287, 10.1139/m69-052 · DOI
- FJ Bunick, 1981, Enolases from fluoride-sensitive and fluoride-resistant streptococci, Infect Immun, 34, 856, 10.1128/IAI.34.3.856-863.1981 · DOI
- JY Sheng, 2000, Acidogenicity and acidurance of fluoride-resistant Streptococcus sobrinus in vitro, Chin J Dent Res, 3, 7
- GL Hoelscher, 1996, Characterization of an unusual fluoride-resistant Streptococcus mutans isolate, Curr Microbiol, 32, 156, 10.1007/s002849900028 · DOI
- GH Bowden, 1990, Effects of fluoride on the microbial ecology of dental plaque, J Dent Res, 69, 653, 10.1177/00220345900690S127 · DOI
- C Van Loveren, 1990, The antimicrobial action of fluoride and its role in caries inhibition, J Dent Res, 69, 676, 10.1177/00220345900690S131 · DOI
- YH Li, 1994, The effect of environmental pH and fluoride from the substratum on the development of biofilms of selected oral bacteria, J Dent Res, 73, 1615, 10.1177/00220345940730100601 · DOI
- PE Chansley, 1989, Transformation of fluoride resistance genes in Streptococcus mutans, Infect Immun, 57, 1968, 10.1128/IAI.57.7.1968-1970.1989 · DOI
- SM Brussock, 1987, Effects of pH on expression of sodium fluoride resistance in Streptococcus mutans, J Dent Res, 66, 1594, 10.1177/00220345870660101701 · DOI
- C van Loveren, 2008, Effects of different kinds of fluorides on enolase and ATPase activity of a fluoride-sensitive and fluoride-resistant Streptococcus mutans strain, Caries Res, 42, 429, 10.1159/000159606 · DOI
- L Zhu, 2012, Fatty-acid profiles and expression of the fabM gene in a fluoride-resistant strain of Streptococcus mutans, Arch Oral Biol, 57, 10, 10.1016/j.archoralbio.2011.06.011 · DOI
- C Van Loveren, 1991, Acidogenesis in relation to fluoride resistance of Streptococcus mutans, Oral Microbiol Immunol, 6, 288, 10.1111/j.1399-302X.1991.tb00494.x · DOI
- SK Sheppard, 2013, Genome-wide association study identifies vitamin B5 biosynthesis as a host specificity factor in Campylobacter, Proc Natl Acad Sci U S A, 110, 11923, 10.1073/pnas.1305559110 · DOI
- MT Alam, 2014, Dissecting vancomycin-intermediate resistance in staphylococcus aureus using genome-wide association, Genome Biol Evol, 6, 1174, 10.1093/gbe/evu092 · DOI
- JD de Stoppelaar, 1967, The presence of dextran-forming bacteria, resembling Streptococcus bovis and Streptococcus anguis, in human dental plaque, Arch Oral Biol, 12, 1199, 10.1016/0003-9969(67)90069-6 · DOI
- C van Loveren, 1991, Competition between fluoride-resistant and fluoride-sensitive Streptococcus mutans in rat dental plaque, Caries Res, 25, 424, 10.1159/000261405 · DOI
- Helderman WH Van Palenstein, 1983, A selective medium for the two major subgroups of the bacterium Streptococcus mutans isolated from human dental plaque and saliva, Arch Oral Biol, 28, 599, 10.1016/0003-9969(83)90007-9 · DOI
- R Luo, 2012, SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler, Gigascience, 1, 18, 10.1186/2047-217X-1-18 · DOI
- H Li, 2010, Fast and accurate long-read alignment with Burrows-Wheeler transform, Bioinformatics, 26, 589, 10.1093/bioinformatics/btp698 · DOI · Paper page
- CA Albers, 2011, Dindel: accurate indel calls from short-read data, Genome Res, 21, 961, 10.1101/gr.112326.110 · DOI
- S Kurtz, 2004, Versatile and open software for comparing large genomes, Genome Biol, 5, R12, 10.1186/gb-2004-5-2-r12 · DOI · Paper page
- R Li, 2009, SOAP2: an improved ultrafast tool for short read alignment, Bioinformatics, 25, 1966, 10.1093/bioinformatics/btp336 · DOI
- WJ Kent, 2002, BLAT—the BLAST-like alignment tool, Genome Res, 12, 656, 10.1101/gr.229202. Article published online before March 2002 · DOI · Paper page
- D Ajdic, 2002, Genome sequence of Streptococcus mutans UA159, a cariogenic dental pathogen, Proc Natl Acad Sci U S A, 99, 14434, 10.1073/pnas.172501299 · DOI
- LM Smoot, 2001, Global differential gene expression in response to growth temperature alteration in group A Streptococcus, Proc Natl Acad Sci U S A, 98, 10416, 10.1073/pnas.191267598 · DOI
- A Brenot, 2005, The PerR regulon in peroxide resistance and virulence of Streptococcus pyogenes, Mol Microbiol, 55, 221, 10.1111/j.1365-2958.2004.04370.x · DOI
- J Bryant, 2012, Developing insights into the mechanisms of evolution of bacterial pathogens from whole-genome sequences, Future Microbiol, 7, 1283, 10.2217/fmb.12.108 · DOI · Paper page
- DF Browning, 2004, The regulation of bacterial transcription initiation, Nat Rev Microbiol, 2, 57, 10.1038/nrmicro787 · DOI
- JL Baker, 2012, Widespread genetic switches and toxicity resistance proteins for fluoride, Science, 335, 233, 10.1126/science.1215063 · DOI · Paper page
- RB Stockbridge, 2012, Fluoride resistance and transport by riboswitch-controlled CLC antiporters, Proc Natl Acad Sci U S A, 109, 15289, 10.1073/pnas.1210896109 · DOI · Paper page
- D Fu, 2002, The structure of GlpF, a glycerol conducting channel, Novartis Found Symp, 245, 51, 10.1002/0470868759.ch5 · DOI
- KB Heller, 1980, Substrate specificity and transport properties of the glycerol facilitator of Escherichia coli, J Bacteriol, 144, 274, 10.1128/JB.144.1.274-278.1980 · DOI
- A Froger, 2001, Functional characterization of a microbial aquaglyceroporin, Microbiology, 147, 1129, 10.1099/00221287-147-5-1129 · DOI
- RE Marquis, 2003, Fluoride and organic weak acids as modulators of microbial physiology, FEMS Microbiol Rev, 26, 493, 10.1111/j.1574-6976.2003.tb00627.x · DOI · Paper page
- TM Curran, 1994, Quasi-irreversible inhibition of enolase of Streptococcus mutans by fluoride, FEMS Microbiol Lett, 119, 283, 10.1111/j.1574-6968.1994.tb06902.x · DOI · Paper page
- P MA Bartholmes, 1990, Purification of Streptococcus mutans enzymes and inhibition by fluoride, J Dent Res, 69, 825
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Wackett, L. P. (2022) · Microbial Biotechnology · doi:10.1111/1751-7915.13928 · Cited by 165
Stockbridge, R. B., & Wackett, L. P. (2024) · Nature Communications · doi:10.1038/s41467-024-49018-1 · Cited by 80
Membrane exporters of fluoride ion
McIlwain, B. C., Ruprecht, M. T., & Stockbridge, R. B. (2021) · Annual Review of Biochemistry · doi:10.1146/annurev-biochem-071520-112507 · Cited by 69
Banerjee, A., Kang, C.-Y., An, M., Koff, B. B., Sunder, S., Kumar, A., Tenuta, L. M. A., & Stockbridge, R. B. (2024) · mBio · doi:10.1128/mbio.00184-24 · Cited by 17
Metadata
- Authors
- Liao, Y., Chen, J., Brandt, B. W., Zhu, Y., Li, J., van Loveren, C., & Deng, D. M.
- Venue
- PLOS ONE
- Publisher
- Public Library of Science (PLoS)
- Published
- 2015-04-09
- Volume
- 10
- Issue
- 4
- Pages
- e0122630
- ISSN
- 1932-6203
- PMC
- PMC4391945
- Cited by
- 58
- References
- 0
- Language
- en
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