Significant Effects of Antiretroviral Therapy on Global Gene Expression in Brain Tissues of Patients with HIV-1-Associated Neurocognitive Disorders
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Intersection of the microglia signature gene list with 46 publicly available data sets for differentially regulated genes in neurodegenerative and behavioral disorders revealed significant enrichment or depletion of microglia signature genes in 28 of the 46 data sets.
“We then intersected this gene list with 46 publicly available data sets for differentially regulated genes in neurodegenerative and behavioral disorders derived from microarray or RNA-seq analysis of intact tissue (39–53). Two-sided Fisher’s exact tests revealed significant enrichment or depletion of microglia signature genes in 28 of the 46 data sets (Table S3).”
From An environment-dependent transcriptional network specifies human microglia identity (2017) · cites this paper as [48]
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Updated research nosology for HIV-associated neurocognitive disorders
Antinori, A., Arendt, G., Becker, J. T., Brew, B. J., Byrd, D. A., Cherner, M., Clifford, D. B., Cinque, P., Epstein, L. G., Goodkin, K., et al. (2007) · Neurology · doi:10.1212/01.wnl.0000287431.88658.8b · Cited by 2,630 · see citing works
Heaton, R. K., Clifford, D. B., Franklin, D. R., Woods, S. P., Ake, C., Vaida, F., Ellis, R. J., Letendre, S. L., Marcotte, T. D., Atkinson, J. H., et al. (2010) · Neurology · doi:10.1212/wnl.0b013e318200d727 · Cited by 2,353 · see citing works
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Research works printed but not linked: 101
- [2]Chang L Ernst T Leonido-Yee M Witt M Speck O 1999 Highly active antiretroviral therapy reverses brain metabolite abnormalities in mild HIV dementia. Neurology 53 782 789 10489041
- [3]Robertson KR Robertson WT Ford S Watson D Fiscus S 2004 Highly active antiretroviral therapy improves neurocognitive functioning. J Acquir Immune Defic Syndr 36 562 566 15097298
- [4]Robertson KR Smurzynski M Parsons TD Wu K Bosch RJ 2007 The prevalence and incidence of neurocognitive impairment in the HAART era. AIDS 21 1915 1921 17721099
- [5]Sacktor N McDermott MP Marder K Schifitto G Selnes OA 2002 HIV-associated cognitive impairment before and after the advent of combination therapy. J Neurovirol 8 136 142 11935465
- [6]Tozzi V Balestra P Bellagamba R Corpolongo A Salvatori MF 2007 Persistence of neuropsychologic deficits despite long-term highly active antiretroviral therapy in patients with HIV-related neurocognitive impairment: prevalence and risk factors. J Acquir Immune Defic Syndr 45 174 182 17356465
- [7]Ellis R Langford D Masliah E 2007 HIV and antiretroviral therapy in the brain: neuronal injury and repair. Nat Rev Neurosci 8 33 44 17180161
- [8]Harezlak J Buchthal S Taylor M Schifitto G Zhong J 2011 Persistence of HIV-associated cognitive impairment, inflammation, and neuronal injury in era of highly active antiretroviral treatment. AIDS 25 625 633 21297425 PMC4326227
- [9]Simioni S Cavassini M Annoni JM Rimbault Abraham A Bourquin I 2010 Cognitive dysfunction in HIV patients despite long-standing suppression of viremia. AIDS 24 1243 1250 19996937
- [11]McArthur JC 2004 HIV dementia: an evolving disease. J Neuroimmunol 157 3 10 15579274
- [12]Chang L Ernst T St Hillaire C Conant K 2004 Antiretroviral treatment alters relationship between MCP-1 and neurometabolites in HIV patients. Antivir Ther 9 431 440 15259906
- [13]Cysique L Brew BJ Halman M Catalan J Sacktor N 2005 Undetectable cerebrospinal fluid HIV RNA and beta-2 microglobulin do not indicate inactive AIDS dementia complex in highly active antiretroviral therapy-treated patients. J Acquir Immune Defic Syndr 39 426 429 16010165
- [14]Edén A Price RW Spudich S Fuchs D Hagberg L 2007 Immune activation of the central nervous system is still present after >4 years of effective highly active antiretroviral therapy. J Infect Dis 196 1779 1783 18190258
- [15]McArthur JC McDermott MP McClernon D St Hillaire C Conant K 2004 Attenuated central nervous system infection in advanced HIV/AIDS with combination antiretroviral therapy. Arch Neurol 61 1687 1696 15534180
- [16]Neuenburg JK Furlan S Bacchetti P Price RW Grant RM 2005 Enrichment of activated monocytes in cerebrospinal fluid during antiretroviral therapy. AIDS 19 1351 1359 16103765
- [17]Anthony IC Ramage SN Carnie FW Simmonds P Bell JE 2005 Influence of HAART on HIV-related CNS disease and neuroinflammation. J Neuropathol Exp Neurol 64 529 536 15977645
- [18]Bild AH Yao G Chang JT Wang Q Potti A 2006 Oncogenic pathway signatures in human cancers as a guide to targeted therapies. Nature 439 353 357 16273092
- [19]Golub TR Slonim DK Tamayo P Huard C Gaasenbeek M 1999 Molecular classification of cancer: class discovery and class prediction by gene expression monitoring. Science 286 531 537 10521349
- [20]Köbel M Kalloger SE Boyd N McKinney S Mehl E 2008 Ovarian carcinoma subtypes are different diseases: implications for biomarker studies. PLoS Med 5 e232 19053170 PMC2592352
- [21]Parmigiani G Garrett-Mayer ES Anbazhagan R Gabrielson E 2004 A cross-study comparison of gene expression studies for the molecular classification of lung cancer. Clin Cancer Res 10 2922 2927 15131026
- [22]Rhodes DR Yu J Shanker K Deshpande N Varambally R 2004 Large-scale meta-analysis of cancer microarray data identifies common transcriptional profiles of neoplastic transformation and progression. Proc Natl Acad Sci USA 101 9309 9314 15184677 PMC438973
- [23]Stratford JK Bentrem DJ Anderson JM Fan C Volmar KA 2010 A six-gene signature predicts survival of patients with localized pancreatic ductal adenocarcinoma. PLoS Med 7 e1000307 20644708 PMC2903589
- [24]Li Q Schacker T Carlis J Beilman G Nguyen P 2004 Functional genomic analysis of the response of HIV-1-infected lymphatic tissue to antiretroviral therapy. J Infect Dis 189 572 582 14767808
- [25]Li Q Smith AJ Schacker TW Carlis JV Duan L 2009 Microarray analysis of lymphatic tissue reveals stage-specific, gene expression signatures in HIV-1 infection. J Immunol 183 1975 1982 19596987 PMC3552354
- [26]Smith AJ Li Q Wietgrefe SW Schacker TW Reilly CS 2010 Host genes associated with HIV-1 replication in lymphatic tissue. J Immunol 185 5417 5424 20935203 PMC2959144
- [27]Rotger M Dang KK Fellay J Heinzen EL Feng S 2010 Genome-wide mRNA expression correlates of viral control in CD4+ T-cells from HIV-1-infected individuals. PLoS Pathog 6 e1000781 20195503 PMC2829051
- [28]Wu JQ Dwyer DE Dyer WB Yang YH Wang B 2008 Transcriptional profiles in CD8+ T cells from HIV+ progressors on HAART are characterized by coordinated up-regulation of oxidative phosphorylation enzymes and interferon responses. Virology 380 124 135 18692859
- [29]Van den Bergh R Florence E Vlieghe E Boonefaes T Grooten J 2010 Transcriptome analysis of monocyte-HIV interactions. Retrovirology 7 53 20546557 PMC2900222
- [30]Richard Y Amiel C Jeantils V Mestivier D Portier A 2010 Changes in blood B cell phenotypes and Epstein-Barr virus load in chronically human immunodeficiency virus-infected patients before and after antiretroviral therapy. J Infect Dis 202 1424 1434 20874514
- [31]Guadalupe M Sankaran S George MD Reay E Verhoeven D 2006 Viral suppression and immune restoration in the gastrointestinal mucosa of human immunodeficiency virus type 1-infected patients initiating therapy during primary or chronic infection. J Virol 80 8236 8247 16873279 PMC1563811
- [32]Sun B Abadjian L Rempel H Calosing C Rothlind J 2010 Peripheral biomarkers do not correlate with cognitive impairment in highly active antiretroviral therapy-treated subjects with human immunodeficiency virus type 1 infection. J Neurovirol 16 115 124 20307252
- [33]Glanzer JG Haydon PG Eberwine JH 2004 Expression profile analysis of neurodegenerative disease: advances in specificity and resolution. Neurochem Res 29 1161 1168 15176473
- [34]Blalock EM Geddes JW Chen KC Porter NM Markesbery WR 2004 Incipient Alzheimer's disease: microarray correlation analyses reveal major transcriptional and tumor suppressor responses. Proc Natl Acad Sci USA 101 2173 2178 14769913 PMC357071
- [35]Lukiw WJ 2004 Gene expression profiling in fetal, aged, and Alzheimer hippocampus: a continuum of stress-related signaling. Neurochem Res 29 1287 1297 15176485
- [36]Miller RM Federoff HJ 2006 Microarrays in Parkinson's disease: a systematic approach. NeuroRx 3 319 326 16815215 PMC3593377
- [37]Sutherland GT Matigian NA Chalk AM Anderson MJ Silburn PA 2009 A cross-study transcriptional analysis of Parkinson's disease. PLoS One 4 e4955 19305504 PMC2654916
- [38]Hakak Y Walker JR Li C Wong WH Davis KL 2001 Genome-wide expression analysis reveals dysregulation of myelination-related genes in chronic schizophrenia. Proc Natl Acad Sci USA 98 4746 4751 11296301 PMC31905
- [39]Lock C Hermans G Pedotti R Brendolan A Schadt E 2002 Gene-microarray analysis of multiple sclerosis lesions yields new targets validated in autoimmune encephalomyelitis. Nat Med 8 500 508 11984595
- [40]Gebicke-Haerter PJ 2005 Microarrays and expression profiling in microglia research and in inflammatory brain disorders. J Neurosci Res 81 327 341 15948185
- [41]Gelman BB Soukup VM Schuenke KW Keherly MJ Holzer C 3rd 2004 Acquired neuronal channelopathies in HIV-associated dementia. J Neuroimmunol 157 111 119 15579287
- [42]Shapshak P Duncan R Torres-Muñoz JE Duran EM Minagar A 2004 Analytic approaches to differential gene expression in AIDS versus control brains. Front Biosci 9 2935 2946 15353327
- [43]Masliah E Roberts ES Langford D Everall I Crews L 2004 Patterns of gene dysregulation in the frontal cortex of patients with HIV encephalitis. J Neuroimmunol 157 163 175 15579294
- [44]Everall I Salaria S Roberts E Corbeil J Sasik R 2005 Methamphetamine stimulates interferon inducible genes in HIV infected brain. J Neuroimmunol 170 158 171 16249037
- [45]Tatro ET Scott ER Nguyen TB Salaria S Banerjee S 2010 Evidence for Alteration of Gene Regulatory Networks through MicroRNAs of the HIV-infected brain: novel analysis of retrospective cases. PLoS One 5 e10337 20436668 PMC2859933
- [46]Lopez-Villegas D Lenkinski RE Frank I 1997 Biochemical changes in the frontal lobe of HIV-infected individuals detected by magnetic resonance spectroscopy. Proc Natl Acad Sci USA 94 9854 9859 9275215 PMC23281
- [47]Sailasuta N Shriner K Ross B 2009 Evidence of reduced glutamate in the frontal lobe of HIV-seropositive patients. NMR Biomed 22 326 331 18988228
- [48]Langford D Marquie-Beck J de Almeida S Lazzaretto D Letendre S 2006 Relationship of antiretroviral treatment to postmortem brain tissue viral load in human immunodeficiency virus-infected patients. J Neurovirol 12 100 107 16798671
- [49]Wang Z Trillo-Pazos G Kim SY Canki M Morgello S 2004 Effects of human immunodeficiency virus type 1 on astrocyte gene expression and function: potential role in neuropathogenesis. J Neurovirol 10 Suppl 1 25 32 14982736
- [50]Kim S-B Yang S Kim S-K Kim SC Woo HG 2007 GAzer: gene set analyzer. Bioinformatics 23 1697 1699 17468122
- [51]Kim SY Volsky DJ 2005 PAGE: parametric analysis of gene set enrichment. BMC Bioinformatics 6 144 15941488 PMC1183189
- [52]Fischer-Smith T Croul S Sverstiuk AE Capini C L'Heureux D 2001 CNS invasion by CD14+/CD16+ peripheral blood-derived monocytes in HIV dementia: perivascular accumulation and reservoir of HIV infection. J Neurovirol 7 528 541 11704885
- [53]McManus CM Weidenheim K Woodman SE Nunez J Hesselgesser J 2000 Chemokine and chemokine-receptor expression in human glial elements: induction by the HIV protein, Tat, and chemokine autoregulation. Am J Pathol 156 1441 1453 10751368 PMC1876886
- [54]Moore DJ Masliah E Rippeth JD Gonzalez R Carey CL 2006 Cortical and subcortical neurodegeneration is associated with HIV neurocognitive impairment. AIDS 20 879 887 16549972
- [55]Yang B Singh S Bressani R Kanmogne GD 2010 Cross-talk between STAT1 and PI3K/AKT signaling in HIV-1-induced blood-brain barrier dysfunction: Role of CCR5 and implications for viral neuropathogenesis. J Neurosci Res 88 3090 3101 20568281 PMC4300945
- [56]Roberts ES Burudi EME Flynn C Madden LJ Roinick KL 2004 Acute SIV infection of the brain leads to upregulation of IL6 and interferon-regulated genes: expression patterns throughout disease progression and impact on neuroAIDS. J Neuroimmunol 157 81 92 15579284
- [57]Logan JMJ Edwards KJ 2009 An overview of PCR platforms. Logan J Edwards K Saunders N Real-Time PCR: Current Technology and Applications Portland, OR Caister Academic Press
- [58]Glass JD Wesselingh SL Selnes OA McArthur JC 1993 Clinical-neuropathologic correlation in HIV-associated dementia. Neurology 43 2230 2237 8232935
- [59]Wohlschlaeger J Wenger E Mehraein P Weis S 2009 White matter changes in HIV-1 infected brains: a combined gross anatomical and ultrastructural morphometric investigation of the corpus callosum. Clin Neurol Neurosurg 111 422 429 19185416
- [60]Power C Kong PA Crawford TO Wesselingh S Glass JD 1993 Cerebral white matter changes in acquired immunodeficiency syndrome dementia: alterations of the blood-brain barrier. Ann Neurol 34 339 350 7689819
- [61]Kapetanovic IM Rosenfeld S Izmirlian G 2004 Overview of commonly used bioinformatics methods and their applications. Ann NY Acad Sci 1020 10 21 15208179
- [62]Chun TW Justement JS Lempicki RA Yang J Dennis G Jr 2003 Gene expression and viral prodution in latently infected, resting CD4+ T cells in viremic versus aviremic HIV-infected individuals. Proc Natl Acad Sci USA 100 1908 1913 12552096 PMC149932
- [63]van't Wout AB Lehrman GK Mikheeva SA O'Keeffe GC Katze MG 2003 Cellular gene expression upon human immunodeficiency virus type 1 infection of CD4+-T-cell lines. J Virol 77 1392 1402 12502855 PMC140827
- [64]Budka H 1991 Neuropathology of human immunodeficiency virus infection. Brain Pathol 1 163 175 1669705
- [65]Everall I Luthert P Lantos P 1993 A review of neuronal damage in human immunodeficiency virus infection: its assessment, possible mechanism and relationship to dementia. J Neuropathol Exp Neurol 52 561 566 8229074
- [66]Kolson DL Pomerantz RJ 1996 AIDS dementia and HIV-1-induced neurotoxicity: possible pathogenic associations and mechanisms. J Biomed Sci 3 389 414 11725121
- [67]Kaul M Garden GA Lipton SA 2001 Pathways to neuronal injury and apoptosis in HIV-associated dementia. Nature 410 988 994 11309629
- [68]Nath A 2002 Human immunodeficiency virus (HIV) proteins in neuropathogenesis of HIV dementia. J Infect Dis 186 Suppl 2 S193 198 12424697
- [69]Kraft-Terry SD Buch SJ Fox HS Gendelman HE 2009 A coat of many colors: neuroimmune crosstalk in human immunodeficiency virus infection. Neuron 64 133 145 19840555 PMC2784686
- [70]Scaravilli F Bazille C Gray F 2007 Neuropathologic contributions to understanding AIDS and the central nervous system. Brain Pathol 17 197 208 17388950 PMC8095617
- [71]Sharer LR Saito Y Epstein LG Blumberg BM 1994 Detection of HIV-1 DNA in pediatric AIDS brain tissue by two-step ISPCR. Adv Neuroimmunol 4 283 285 7874396
- [72]Navia BA Cho ES Petito CK Price RW 1986 The AIDS dementia complex: II. Neuropathology. Ann Neurol 19 525 535 3014994
- [73]Roberts ES Zandonatti MA Watry DD Madden LJ Henriksen SJ 2003 Induction of pathogenic sets of genes in macrophages and neurons in NeuroAIDS. Am J Pathol 162 2041 2057 12759259 PMC1868118
- [74]Bell JE 1998 The neuropathology of adult HIV infection. Rev Neurol (Paris) 154 816 829 9932303
- [75]Gray F Adle-Biassette H Chretien F Lorin de la Grandmaison G Force G 2001 Neuropathology and neurodegeneration in human immunodeficiency virus infection. Pathogenesis of HIV-induced lesions of the brain, correlations with HIV-associated disorders and modifications according to treatments. Clin Neuropathol 20 146 155 11495003
- [76]Kraft-Terry SD Stothert AR Buch S Gendelman HE 2010 HIV-1 neuroimmunity in the era of antiretroviral therapy. Neurobiol Dis 37 542 548 20044002 PMC2840259
- [77]Xing HQ Hayakawa H Gelpi E Kubota R Budka H 2009 Reduced expression of excitatory amino acid transporter 2 and diffuse microglial activation in the cerebral cortex in AIDS cases with or without HIV encephalitis. J Neuropathol Exp Neurol 68 199 209 19151621
- [78]Yadav A Collman RG 2009 CNS inflammation and macrophage/microglial biology associated with HIV-1 infection. J Neuroimmune Pharmacol 4 430 447 19768553 PMC5935112
- [79]D'Agata V Cavallaro S 2004 Genomic portraits of the nervous system in health and disease. Neurochem Res 29 1201 1212 15176477
- [80]Hoheisel JD 2006 Microarray technology: beyond transcript profiling and genotype analysis. Nat Rev Genet 7 200 210 16485019
- [81]Stefani M Liguri G 2009 Cholesterol in Alzheimer's disease: unresolved questions. Curr Alzheimer Res 6 15 29 19199871
- [82]Cutler RG Haughey NJ Tammara A McArthur JC Nath A 2004 Dysregulation of sphingolipid and sterol metabolism by ApoE4 in HIV dementia. Neurology 63 626 630 15326233
- [83]Haughey NJ Bandaru VV Bae M Mattson MP 2010 Roles for dysfunctional sphingolipid metabolism in Alzheimer's disease neuropathogenesis. Biochim Biophys Acta 1801 878 886 20452460 PMC2907186
- [84]Abildayeva K Berbee JF Blokland A Jansen PJ Hoek FJ 2008 Human apolipoprotein C-I expression in mice impairs learning and memory functions. J Lipid Res 49 856 869 18160739
- [85]Hua S Antao ST Corbett A Witting PK 2010 The significance of neuroglobin in the brain. Curr Med Chem 17 160 172 19941472
- [86]Ferrer I Gomez A Carmona M Huesa G Porta S 2011 Neuronal hemoglobin is reduced in Alzheimer's disease, argyrophilic grain disease, Parkinson's disease, and dementia with Lewy bodies. J Alzheimers Dis 23 537 550 21157025
- [87]Valcour V Sithinamsuwan P Letendre S Ances B 2011 Pathogenesis of HIV in the central nervous system. Curr HIV/AIDS Rep 8 54 61 21191673 PMC3035797
- [88]Lipton S Gendelman HE 1995 Dementia associated with the acquired immunodeficiency syndrome. N Engl J Med 233 934 940 7877652
- [89]Jensen LJ Kuhn M Stark M Chaffron S Creevey C 2009 STRING 8–a global view on proteins and their functional interactions in 630 organisms. Nucl Acids Res 37 D412 D416 18940858 PMC2686466
- [90]Piehl F Olsson T 2009 Inflammation and susceptibility to neurodegeneration: the use of unbiased genetics to decipher critical regulatory pathways. Neuroscience 158 1143 1150 18805461
- [91]Stadelmann C Bruck W 2008 Interplay between mechanisms of damage and repair in multiple sclerosis,. J, Neurol 255 Suppl 1 12 18 18317672
- [92]Gongvatana A Schweinsburg BC Taylor MJ Theilmann RJ Letendre SL 2009 White matter tract injury and cognitive impairment in human immunodeficiency virus-infected individuals. J Neurovirol 15 187 195 19306228 PMC3066173
- [93]Barber SA Herbst DS Bullock BT Gama L Clements JE 2004 Innate immune responses and control of acute simian immunodeficiency virus replication in the central nervous system. J Neurovirol 10 Suppl. 1 15 20 14982734
- [94]Sas AR Bimonte-Nelson H Smothers CT Woodward J Tyor WR 2009 Interferon-α causes neuronal dysfunction in encephalitis. J Neurosci 29 3948 3955 19321791 PMC3598587
- [95]Woods SP Rippeth JD Frol AB Levy JK Ryan E 2004 Interrater reliability of clinical ratings and neurocognitive diagnoses in HIV-1. J Clin Exp Neuropsych 26 759 778 15370374
- [96]Report of a Working Group of the American Academy of Neurology AIDS Task Force 1991 Nomenclature and research case definitions for neurologic manifestations of human immunodeficiency virus-type 1 (HIV-1) infection. Neurology 41 778 785 2046917
- [97]Reynolds NR Sun J Nagaraja HN Gifford AL Wu AW 2007 Optimizing measurement of self-reported adherence with the ACTG Adherence Questionnaire: a cross-protocol analysis. J Acquir Immune Defic Syndr 46 402 409 18077832
- [98]Chowdhury IH Chao W Potash MJ Sova P Gendelman HE 1996 vif-negative human immunodeficiency virus type 1 persistently replicates in primary macrophages, producing attenuated progeny virus. J Virol 70 5336 5345 8764044 PMC190491
- [99]Ou C-Y Kwok S Mitchell S Mack D Sninsky J 1988 DNA amplification for direct detection of HIV-1 in DNA of peripheral blood mononuclear cells. Science 239 295 297 3336784
- [100]Hadas E Borjabad A Chao W Saini M Ichiyama K 2007 Testing antiretroviral drug efficacy in conventional mice infected with chimeric HIV-1. AIDS 21 905 909 17457083
- [101]Sturn A Quackenbush J Trajanoski Z 2002 Genesis: cluster analysis of microarray data. Bioinformatics 18 207 208 11836235
- [102]Hosack DA Dennis G Jr Sherman BT Lane HC Lempicki RA 2003 Identifying biological themes within lists of genes with EASE. Genome Biol 4 R70 14519205 PMC328459
- [103]Wu HS Murray J Morgello S 2008 Segmentation of Brain Immunohistochemistry Images Using Clustering of Linear Centroids and Regional Shapes. J Imaging Sci Technol 52 405021 4050211 19756243 PMC2743023
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An environment-dependent transcriptional network specifies human microglia identity
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- Borjabad, A., Morgello, S., Chao, W., Kim, S.-Y., Brooks, A. I., Murray, J., Potash, M. J., & Volsky, D. J.
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- Public Library of Science (PLoS)
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