Cited by 76Tuberculosis Research and EpidemiologyMycobacterium research and diagnosisBacterial Genetics and Biotechnology

Phosphorylation of KasB Regulates Virulence and Acid-Fastness in Mycobacterium tuberculosis

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Vilchèze, Catherine, Molle, Virginie, Carrère-Kremer, Séverine, Leiba, Jade, Mourey, Lionel, Shenai, Shubhada, Baronian, Grégory, Tufariello, Joann +9 more·2014·PLoS Pathogens

Abstract

Mycobacterium tuberculosis bacilli display two signature features: acid-fast staining and the capacity to induce long-term latent infections in humans. However, the mechanisms governing these two important processes remain largely unknown. Ser/Thr phosphorylation has recently emerged as an important regulatory mechanism allowing mycobacteria to adapt their cell wall structure/composition in response to their environment. Herein, we evaluated whether phosphorylation of KasB, a crucial mycolic acid biosynthetic enzyme, could modulate acid-fast staining and virulence. Tandem mass spectrometry and site-directed mutagenesis revealed that phosphorylation of KasB occurred at Thr334 and Thr336 both in vitro and in mycobacteria. Isogenic strains of M. tuberculosis with either a deletion of the kasB gene or a kasB_T334D/T336D allele, mimicking constitutive phosphorylation of KasB, were constructed by specialized linkage transduction. Biochemical and structural analyses comparing these mutants to the parental strain revealed that both mutant strains had mycolic acids that were shortened by 4-6 carbon atoms and lacked trans-cyclopropanation. Together, these results suggested that in M. tuberculosis, phosphorylation profoundly decreases the condensing activity of KasB. Structural/modeling analyses reveal that Thr334 and Thr336 are located in the vicinity of the catalytic triad, which indicates that phosphorylation of these amino acids would result in loss of enzyme activity. Importantly, the kasB_T334D/T336D phosphomimetic and deletion alleles, in contrast to the kasB_T334A/T336A phosphoablative allele, completely lost acid-fast staining. Moreover, assessing the virulence of these strains indicated that the KasB phosphomimetic mutant was attenuated in both immunodeficient and immunocompetent mice following aerosol infection. This attenuation was characterized by the absence of lung pathology. Overall, these results highlight for the first time the role of Ser/Thr kinase-dependent KasB phosphorylation in regulating the later stages of mycolic acid elongation, with important consequences in terms of acid-fast staining and pathogenicity.

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Crossref · 10.1371/journal.ppat.1004115

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  • The FAS-II enzymes are all inhibited through phosphorylation by PknA, PknB and other STPKs.

    “The FAS-​II enzymes are all inhibited through phosphorylation by PknA, PknB and other STPKs89–93.”

    From The mycobacterial cell envelope — a moving target (2020) · cites this paper as [90]

    The Introduction (page not provided) says that most essential enzymes in the FASII central core are phosphorylated by STPKs and that phosphorylation inhibits their activity at least in vitro. The Results (page not provided) show that KasB can be phosphorylated by PknA, PknB and other kinases, but the paper does not establish that all FASII enzymes are inhibited by those kinases. (LLM, conf=0.88)

    Experimental — accuracy not yet measured
  • PknH, PknD, PknL and PknF can also phosphorylate various FAS-II enzymes.

    “PknH, PknD, PknL and PknF can also phosphorylate various FAS-​II enzymes.”

    From The mycobacterial cell envelope — a moving target (2020) · cites this paper as [90]

    The Results section ('KasB is phosphorylated in vivo and in vitro on Thr334 and Thr336'; page unavailable) shows that PknH, PknD, PknL and PknF can phosphorylate KasB, a FAS-II enzyme. The Introduction names several other phosphorylated FAS-II enzymes, but does not identify these four kinases as phosphorylating those enzymes, so 'various FAS-II enzymes' is not fully supported. (LLM, conf=0.86)

    Experimental — accuracy not yet measured
  • When KasB is inhibited by phosphorylation through PknF, M. tuberculosis loses its acid-fastness, has shorter meromycolate chains and a more permeable wall, and exhibits decreased uptake by macrophages and decreased growth and virulence in the mouse.

    “When KasB is inhibited by phosphorylation through PknF90, M. tuberculosis loses its acid-​fastness, has shorter mero- mycolate chains and a more permeable wall, and exhib- its decreased uptake by macrophages and decreased growth and virulence in the mouse90.”

    From The mycobacterial cell envelope — a moving target (2020) · cites this paper as [90]

    Split into 2 atoms — 0 confirmed, 2 partially supported, 0 disputed, 0 misattributed, 0 unverifiable. Expand the claim to see per-atom verdicts.

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Research works printed but not linked: 53

  1. [1]Zhou P, Long Q, Zhou Y, Wang H, Xie J (2012) Mycobacterium tuberculosis two-component systems and implications in novel vaccines and drugs. Crit Rev Eukaryot Gene Expr 22: 37– 52. 22339658
  2. [2]Cole ST, Brosch R, Parkhill J, Garnier T, Churcher C, et al (1998) Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence. Nature 393: 537– 544. 9634230
  3. [3]Av-Gay Y, Everett M (2000) The eukaryotic-like Ser/Thr protein kinases of Mycobacterium tuberculosis. Trends Microbiol 8: 238– 244. 10785641
  4. [4]Prisic S, Dankwa S, Schwartz D, Chou MF, Locasale JW, et al (2010) Extensive phosphorylation with overlapping specificity by Mycobacterium tuberculosis serine/threonine protein kinases. Proc Natl Acad Sci U S A 107: 7521– 7526. 20368441 PMC2867705
  5. [5]Chao J, Wong D, Zheng X, Poirier V, Bach H, et al (2010) Protein kinase and phosphatase signaling in Mycobacterium tuberculosis physiology and pathogenesis. Biochim Biophys Acta 1804: 620– 627. 19766738
  6. [6]Molle V, Kremer L (2010) Division and cell envelope regulation by Ser/Thr phosphorylation: Mycobacterium shows the way. Mol Microbiol 75: 1064– 1077. 20487298
  7. [7]Wehenkel A, Bellinzoni M, Grana M, Duran R, Villarino A, et al (2008) Mycobacterial Ser/Thr protein kinases and phosphatases: physiological roles and therapeutic potential. Biochim Biophys Acta 1784: 193– 202. 17869195
  8. [8]Molle V, Brown AK, Besra GS, Cozzone AJ, Kremer L (2006) The condensing activities of the Mycobacterium tuberculosis type II fatty acid synthase are differentially regulated by phosphorylation. J Biol Chem 281: 30094– 30103. 16873379
  9. [9]Veyron-Churlet R, Zanella-Cleon I, Cohen-Gonsaud M, Molle V, Kremer L (2010) Phosphorylation of the Mycobacterium tuberculosis beta-ketoacyl-acyl carrier protein reductase MabA regulates mycolic acid biosynthesis. J Biol Chem 285: 12714– 12725. 20178986 PMC2857119
  10. [10]Molle V, Gulten G, Vilcheze C, Veyron-Churlet R, Zanella-Cleon I, et al (2010) Phosphorylation of InhA inhibits mycolic acid biosynthesis and growth of Mycobacterium tuberculosis. Mol Microbiol 78: 1591– 1605. 21143326
  11. [11]Khan S, Nagarajan SN, Parikh A, Samantaray S, Singh A, et al (2010) Phosphorylation of enoyl-acyl carrier protein reductase InhA impacts mycobacterial growth and survival. J Biol Chem 285: 37860– 37871. 20864541 PMC2988389
  12. [12]Slama N, Leiba J, Eynard N, Daffe M, Kremer L, et al (2011) Negative regulation by Ser/Thr phosphorylation of HadAB and HadBC dehydratases from Mycobacterium tuberculosis type II fatty acid synthase system. Biochem Biophys Res Commun 412: 401– 406. 21819969
  13. [13]Lacave C, Laneelle MA, Daffe M, Montrozier H, Laneelle G (1989) Mycolic acid metabolic filiation and location in Mycobacterium aurum and Mycobacterium phlei. Eur J Biochem 181: 459– 466. 2714297
  14. [14]Bhatt A, Fujiwara N, Bhatt K, Gurcha SS, Kremer L, et al (2007) Deletion of kasB in Mycobacterium tuberculosis causes loss of acid-fastness and subclinical latent tuberculosis in immunocompetent mice. Proc Natl Acad Sci U S A 104: 5157– 5162. 17360388 PMC1829279
  15. [15]Veyron-Churlet R, Molle V, Taylor RC, Brown AK, Besra GS, et al (2009) The Mycobacterium tuberculosis beta-ketoacyl-acyl carrier protein synthase III activity is inhibited by phosphorylation on a single threonine residue. J Biol Chem 284: 6414– 6424. 19074144 PMC2649087
  16. [16]Canova MJ, Kremer L, Molle V (2009) The Mycobacterium tuberculosis GroEL1 chaperone is a substrate of Ser/Thr protein kinases. J Bacteriol 191: 2876– 2883. 19201798 PMC2668390
  17. [17]Corrales RM, Molle V, Leiba J, Mourey L, de Chastellier C, et al (2012) Phosphorylation of mycobacterial PcaA inhibits mycolic acid cyclopropanation: consequences for intracellular survival and for phagosome maturation block. J Biol Chem 287: 26187– 26199. 22621931 PMC3406704
  18. [18]Molle V, Leiba J, Zanella-Cleon I, Becchi M, Kremer L (2010) An improved method to unravel phosphoacceptors in Ser/Thr protein kinase-phosphorylated substrates. Proteomics 10: 3910– 3915. 20925060
  19. [19]Sridharan S, Wang L, Brown AK, Dover LG, Kremer L, et al (2007) X-Ray Crystal Structure of Mycobacterium tuberculosis beta-Ketoacyl Acyl Carrier Protein Synthase II (mtKasB). J Mol Biol 366: 469– 480. 17174327 PMC2590929
  20. [20]Luckner SR, Machutta CA, Tonge PJ, Kisker C (2009) Crystal structures of Mycobacterium tuberculosis KasA show mode of action within cell wall biosynthesis and its inhibition by thiolactomycin. Structure 17: 1004– 1013. 19604480 PMC2734888
  21. [22]Cottin V, Van Linden A, Riches DW (1999) Phosphorylation of tumor necrosis factor receptor CD120a (p55) by p42(mapk/erk2) induces changes in its subcellular localization. J Biol Chem 274: 32975– 32987. 10551865
  22. [23]Vilcheze C, Wang F, Arai M, Hazbon MH, Colangeli R, et al (2006) Transfer of a point mutation in Mycobacterium tuberculosis inhA resolves the target of isoniazid. Nat Med 12: 1027– 1029. 16906155
  23. [24]Gao LY, Laval F, Lawson EH, Groger RK, Woodruff A, et al (2003) Requirement for kasB in Mycobacterium mycolic acid biosynthesis, cell wall impermeability and intracellular survival: implications for therapy. Mol Microbiol 49: 1547– 1563. 12950920
  24. [25]Glickman MS, Cahill SM, Jacobs WR Jr (2001) The Mycobacterium tuberculosis cmaA2 gene encodes a mycolic acid trans-cyclopropane synthetase. J Biol Chem 276: 2228– 2233. 11092877
  25. [26]Veyron-Churlet R, Bigot S, Guerrini O, Verdoux S, Malaga W, et al (2005) The biosynthesis of mycolic acids in Mycobacterium tuberculosis relies on multiple specialized elongation complexes interconnected by specific protein-protein interactions. J Mol Biol 353: 847– 858. 16213523
  26. [27]Veyron-Churlet R, Guerrini O, Mourey L, Daffe M, Zerbib D (2004) Protein-protein interactions within the Fatty Acid Synthase-II system of Mycobacterium tuberculosis are essential for mycobacterial viability. Mol Microbiol 54: 1161– 1172. 15554959
  27. [28]Novo DJ, Perlmutter NG, Hunt RH, Shapiro HM (2000) Multiparameter flow cytometric analysis of antibiotic effects on membrane potential, membrane permeability, and bacterial counts of Staphylococcus aureus and Micrococcus luteus. Antimicrob Agents Chemother 44: 827– 834. 10722477 PMC89778
  28. [29]Shapiro HM (2008) Flow cytometry of bacterial membrane potential and permeability. Methods Mol Med 142: 175– 186. 18437314
  29. [30]Camacho LR, Ensergueix D, Perez E, Gicquel B, Guilhot C (1999) Identification of a virulence gene cluster of Mycobacterium tuberculosis by signature-tagged transposon mutagenesis. Mol Microbiol 34: 257– 267. 10564470
  30. [31]Domenech P, Reed MB, Barry CE 3rd (2005) Contribution of the Mycobacterium tuberculosis MmpL protein family to virulence and drug resistance. Infect Immun 73: 3492– 3501. 15908378 PMC1111821
  31. [32]Deshayes C, Bach H, Euphrasie D, Attarian R, Coureuil M, et al (2010) MmpS4 promotes glycopeptidolipids biosynthesis and export in Mycobacterium smegmatis. Mol Microbiol 78: 989– 1003. 21062372
  32. [33]Singh A, Jain S, Gupta S, Das T, Tyagi AK (2003) mymA operon of Mycobacterium tuberculosis: its regulation and importance in the cell envelope. FEMS Microbiol Lett 227: 53– 63. 14568148
  33. [34]Hatzios SK, Schelle MW, Holsclaw CM, Behrens CR, Botyanszki Z, et al (2009) PapA3 is an acyltransferase required for polyacyltrehalose biosynthesis in Mycobacterium tuberculosis. J Biol Chem 284: 12745– 12751. 19276083 PMC2676004
  34. [35]Fernandez P, Saint-Joanis B, Barilone N, Jackson M, Gicquel B, et al (2006) The Ser/Thr protein kinase PknB is essential for sustaining mycobacterial growth. J Bacteriol 188: 7778– 7784. 16980473 PMC1636329
  35. [37]Papavinasasundaram KG, Chan B, Chung JH, Colston MJ, Davis EO, et al (2005) Deletion of the Mycobacterium tuberculosis pknH gene confers a higher bacillary load during the chronic phase of infection in BALB/c mice. J Bacteriol 187: 5751– 5760. 16077122 PMC1196067
  36. [38]Cowley S, Ko M, Pick N, Chow R, Downing KJ, et al (2004) The Mycobacterium tuberculosis protein serine/threonine kinase PknG is linked to cellular glutamate/glutamine levels and is important for growth in vivo. Mol Microbiol 52: 1691– 1702. 15186418
  37. [39]Slayden RA, Barry CE 3rd (2002) The role of KasA and KasB in the biosynthesis of meromycolic acids and isoniazid resistance in Mycobacterium tuberculosis. Tuberculosis (Edinb) 82: 149– 160. 12464486
  38. [40]Cantaloube S, Veyron-Churlet R, Haddache N, Daffe M, Zerbib D (2011) The Mycobacterium tuberculosis FAS-II dehydratases and methyltransferases define the specificity of the mycolic acid elongation complexes. PLoS One 6: e29564. 22216317 PMC3245277
  39. [41]Yamada H, Bhatt A, Danev R, Fujiwara N, Maeda S, et al (2012) Non-acid-fastness in Mycobacterium tuberculosis DeltakasB mutant correlates with the cell envelope electron density. Tuberculosis (Edinb) 92: 351– 357. 22516756
  40. [42]Rousseau C, Neyrolles O, Bordat Y, Giroux S, Sirakova TD, et al (2003) Deficiency in mycolipenate- and mycosanoate-derived acyltrehaloses enhances early interactions of Mycobacterium tuberculosis with host cells. Cell Microbiol 5: 405– 415. 12780778
  41. [43]Trebucq A (2004) Revisiting sputum smear microscopy. Int J Tuberc Lung Dis 8: 805. 15260269
  42. [45]Jackson M, Crick DC, Brennan PJ (2000) Phosphatidylinositol is an essential phospholipid of mycobacteria. J Biol Chem 275: 30092– 30099. 10889206
  43. [46]Canova MJ, Kremer L, Molle V (2008) pETPhos: a customized expression vector designed for further characterization of Ser/Thr/Tyr protein kinases and their substrates. Plasmid 60: 149– 153. 18597845
  44. [47]Bardarov S, Bardarov S Jr, Jr, Pavelka MS Jr, Jr, Sambandamurthy V, Larsen M, et al (2002) Specialized transduction: an efficient method for generating marked and unmarked targeted gene disruptions in Mycobacterium tuberculosis, M. bovis BCG and M. smegmatis. Microbiology 148: 3007– 3017. 12368434
  45. [48]Vilcheze C, Baughn AD, Tufariello J, Leung LW, Kuo M, et al (2011) Novel Inhibitors of InhA Efficiently Kill Mycobacterium tuberculosis under Aerobic and Anaerobic Conditions. Antimicrob Agents Chemother 55: 3889– 3898. 21628538 PMC3147652
  46. [49]Li L, Mahan CS, Palaci M, Horter L, Loeffelholz L, et al (2010) Sputum Mycobacterium tuberculosis mRNA as a marker of bacteriologic clearance in response to antituberculosis therapy. J Clin Microbiol 48: 46– 51. 19923475 PMC2812283
  47. [50]Menendez MC, Garcia MJ, Navarro MC, Gonzalez-y-Merchand JA, Rivera-Gutierrez S, et al (2002) Characterization of an rRNA operon (rrnB) of Mycobacterium fortuitum and other mycobacterial species: implications for the classification of mycobacteria. J Bacteriol 184: 1078– 1088. 11807068 PMC134815
  48. [51]Nunez MC, Menendez MC, Rebollo MJ, Garcia MJ (2008) Transcriptional analysis of Mycobacterium fortuitum cultures upon hydrogen peroxide treatment using the novel standard rrnA-P1. BMC Microbiol 8: 100. 18565220 PMC2443159
  49. [52]Vilcheze C, Weinrick B, Wong KW, Chen B, Jacobs WR Jr (2010) NAD+ auxotrophy is bacteriocidal for the tubercle bacilli. Mol Microbiol 76: 365– 377. 20199601 PMC2945688
  50. [53]Molle V, Kremer L, Girard-Blanc C, Besra GS, Cozzone AJ, et al (2003) An FHA phosphoprotein recognition domain mediates protein EmbR phosphorylation by PknH, a Ser/Thr protein kinase from Mycobacterium tuberculosis. Biochemistry 42: 15300– 15309. 14690440
  51. [54]Kremer L, Guerardel Y, Gurcha SS, Locht C, Besra GS (2002) Temperature-induced changes in the cell-wall components of Mycobacterium thermoresistibile. Microbiology 148: 3145– 3154. 12368448
  52. [55]Pawelczyk J, Brzostek A, Kremer L, Dziadek B, Rumijowska-Galewicz A, et al (2011) AccD6, a key carboxyltransferase essential for mycolic acid synthesis in Mycobacterium tuberculosis, is dispensable in a nonpathogenic strain. J Bacteriol 193: 6960– 6972. 21984794 PMC3232849
  53. [56]Kremer L, Dover LG, Carrere S, Nampoothiri KM, Lesjean S, et al (2002) Mycolic acid biosynthesis and enzymic characterization of the beta-ketoacyl-ACP synthase A-condensing enzyme from Mycobacterium tuberculosis. Biochem J 364: 423– 430. 12023885 PMC1222587

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Authors
Vilchèze, C., Molle, V., Carrère-Kremer, S., Leiba, J., Mourey, L., Shenai, S., Baronian, G., Tufariello, J., Hartman, T., Veyron-Churlet, R., Trivelli, X., Tiwari, S., Weinrick, B., Alland, D., Guérardel, Y., Jacobs, W. R., & Kremer, L.
Affiliations
  • Albert Einstein College of Medicine (US)
  • Centre National de la Recherche Scientifique (FR)
  • Rutgers Health (US)
Corresponding author
Kremer, Laurent
Venue
PLoS Pathogens
Published
2014-05-08
Volume
10
Issue
5
Pages
e1004115
ISSN
  • 1553-7366 (ISSN-L)
  • 1553-7374
OpenAlex
W2025963602
Cited by
76
References
3
Citations by year
2026: 4 · 2025: 3 · 2024: 3 · 2023: 7 · 2022: 3 · 2021: 5 · 2020: 10 · 2019: 7 · 2018: 6 · 2017: 12 · 2016: 8 · 2015: 6 · 2014: 2
FWCI
6.56
Type
journal article
Language
en
Open access
Locations
  • PLoS Pathogens (publishedVersion, cc-by)
  • Europe PMC (PubMed Central) (publishedVersion, cc-by)
  • PubMed Central (publishedVersion, cc-by)
  • PubMed (publishedVersion)
  • Rutgers University Community Repository (Rutgers University) (submittedVersion)
  • HAL (submittedVersion, cc-by)
  • HAL (submittedVersion, other-oa)
  • DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
  • LillOA (Université de Lille (University Of Lille)) (submittedVersion, cc-by)
Funders
  • Howard Hughes Medical Institute
  • Agence Nationale de la Recherche (ANR-09-MIEN-0004)
  • Inha University
  • Centre National de la Recherche Scientifique (IR-RMN-THC FR3050 CNRS, Fr3050, IR-RMN-THC Fr3050)
  • Université de Montpellier
  • National Institutes of Health (AI0-51519, AI26170)
  • National Institute of Allergy and Infectious Diseases (R01AI026170, AI-26170, P30AI051519, AI 051519, P01AI063537, R01AI098925, R37AI026170)
Topics
  • Health Sciences › Medicine › Infectious Diseases › Tuberculosis Research and Epidemiology
  • Health Sciences › Medicine › Epidemiology › Mycobacterium research and diagnosis
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Bacterial Genetics and Biotechnology
Keywords
Mycobacterium tuberculosis, kasb, serine/threonine phosphorylation, mycolic acid biosynthesis, acid-fast staining, bacterial virulence, phosphomimetic mutant, catalytic triad, latent tuberculosis infection, aerosol infection, mouse model
MeSH terms
Animals, Bacterial Proteins, Cell Wall, Mice, Inbred C57BL, Microbiological Techniques, Models, Molecular, Mycobacterium tuberculosis, Mycolic Acids, Phosphorylation, Staining and Labeling, Tuberculosis, Virulence, 3-Oxoacyl-(Acyl-Carrier-Protein) Synthase, Mice, SCID, Protein Serine-Threonine Kinases, Catalytic Domain, Lipid Metabolism, Mice

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