Distinct Roles for Somatically and Dendritically Synthesized Brain-Derived Neurotrophic Factor in Morphogenesis of Dendritic Spines
Open accessAbstract
Dendritic spines undergo the processes of formation, maturation, and pruning during development. Molecular mechanisms controlling spine maturation and pruning remain largely unknown. The gene for brain-derived neurotrophic factor (BDNF) produces two pools of mRNA, with either a short or long 3' untranslated region (3' UTR). Our previous results show that short 3' UTR Bdnf mRNA is restricted to cell bodies, whereas long 3' UTR Bdnf mRNA is also trafficked to dendrites for local translation. Mutant mice lacking long 3' UTR Bdnf mRNA display normal spines at 3 weeks of age, but thinner and denser spines in adults compared to wild-type littermates. These observations suggest that BDNF translated from long 3' UTR Bdnf mRNA, likely in dendrites, is required for spine maturation and pruning. In this study, using rat hippocampal neuronal cultures, we found that knocking down long 3' UTR Bdnf mRNA blocked spine head enlargement and spine elimination, whereas overexpressing long 3' UTR Bdnf mRNA had the opposite effect. The effect of long 3' UTR Bdnf mRNA on spine head enlargement and spine elimination was diminished by a human single-nucleotide polymorphism (SNP, rs712442) in its 3' UTR that inhibited dendritic localization of Bdnf mRNA. Furthermore, we found that overexpression of either Bdnf mRNA increased spine density at earlier time points. Spine morphological alterations were associated with corresponding changes in density, size, and function of synapses. These results indicate that somatically synthesized BDNF promotes spine formation, whereas dendritically synthesized BDNF is a key regulator of spine head growth and spine pruning.
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
mBDNF-TrkB-signaling pathways regulate multiple events, such as apoptosis and survival of neurons, dendritic growth, spine maturation and stabilization, development of synapses, and learning- and memory-processes-dependent synaptic plasticity.
“mBDNF-TrkB-signaling pathways regulate multiple events, such as apoptosis and survival of neurons [90,91,92], dendritic growth [93,94,95,96], spine maturation and stabilization, development of synapses [96,97,98], learning- and memory-processes-dependent synaptic plasticity [99,100].”
From Neurotrophic Factor BDNF, Physiological Functions and Therapeutic Potential in Depression, Neurodegeneration and Brain Cancer (2020) · cites this paper as [95]
The Introduction and Discussion report that BDNF synthesized in dendrites regulates spine maturation and pruning, and the section on corresponding synaptic changes reports effects on excitatory synapse number and size. Those findings support the spine-maturation and synapse-development portions associated with this citation. Our copy does not establish dendritic growth or spine stabilization, or identify TrkB signaling as the mechanism for these effects; the citations attached to apoptosis and learning-dependent plasticity are different references. (LLM, conf=0.86)
Experimental — accuracy not yet measuredPrimary cultures of hippocampal neurons have been used as an in vitro system to investigate formation, maturation, and pruning of dendritic spines, with spine density increasing between DIV6-10, peaking at DIV14-21, and decreasing after weeks 3 or 4.
“Primary cultures of hippocampal neurons have been used as an in vitro system to investigate the formation, maturation and pruning of dendritic spines, in which dendritic spines are formed and pruned during a developmental period similar to that in vivo in mouse brain (Orefice et al., 2013; Ko et al., 2011; Papa et al., 1995), with spine density increases between 6-10 days in vitro (DIV6-10), peaks”
From Loss of mTOR-Dependent Macroautophagy Causes Autistic-like Synaptic Pruning Deficits (2014) · cites this paper as Orefice et al., 2013
BDNF-TrkB signaling pathways regulate dendritic growth, synapse development, learning- and memory-processes-dependent synaptic plasticity, apoptosis, and survival of neurons.
“BDNF-TrkB signaling pathways regulate multiple events, such as dendritic growth, pine maturation and stabilization [41,42,43], development of synapses [44,45], learning- and memory-processes-dependent synaptic plasticity [40,46,47], apoptosis, and survival of neurons [48,49,50,51].”
From BDNF as a Promising Therapeutic Agent in Parkinson’s Disease (2020) · cites this paper as [43]
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Cites
Structural basis of long-term potentiation in single dendritic spines
Matsuzaki, M., Honkura, N., Ellis-Davies, G. C. R., & Kasai, H. (2004) · Nature · doi:10.1038/nature02617 · Cited by 2,500 · see citing works
Experience-dependent structural synaptic plasticity in the mammalian brain
Holtmaat, A., & Svoboda, K. (2009) · Nature Reviews Neuroscience · doi:10.1038/nrn2699 · Cited by 1,934 · see citing works
Matsuzaki, M., Ellis-Davies, G. C. R., Nemoto, T., Miyashita, Y., Iino, M., & Kasai, H. (2001) · Nature Neuroscience · doi:10.1038/nn736 · Cited by 1,563 · cited 1× · see citing works
“Previous studies have shown that GluA1 intensity correlates with spine head size (Matsuzaki et al., 2001, 2004).”
BackgroundLong-term dendritic spine stability in the adult cortex
Grutzendler, J., Kasthuri, N., & Gan, W.-B. (2002) · Nature · doi:10.1038/nature01276 · Cited by 1,198 · see citing works
Concurrent overproduction of synapses in diverse regions of the primate cerebral cortex
Rakic, P., Bourgeois, J.-P., Eckenhoff, M. F., Zecevic, N., & Goldman-Rakic, P. S. (1986) · Science · doi:10.1126/science.3952506 · Cited by 1,133 · cited 2× · see citing works
“During the pruning phase, up to 40% of spines are selectively eliminated, while the remaining spines mature, changing in morphology from long and thin to short and stubby (Marin-Padilla, 1967; Huttenlocher, 1979; Rakic et al., 1986; Grutzendler et al., 2002; Zuo et al., 2005b).”
BackgroundAbnormal dendritic spines in fragile X knockout mice: Maturation and pruning deficits
Comery, T. A., Harris, J. B., Willems, P. J., Oostra, B. A., Irwin, S. A., Weiler, I. J., & Greenough, W. T. (1997) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.94.10.5401 · Cited by 1,046 · see citing works
Rapid Actin-Based Plasticity in Dendritic Spines
Fischer, M., Kaech, S., Knutti, D., & Matus, A. (1998) · Neuron · doi:10.1016/s0896-6273(00)80467-5 · Cited by 905 · see citing works
NMDA Receptor Content of Synapses in Stratum Radiatum of the Hippocampal CA1 Area
Racca, C., Stephenson, F. A., Streit, P., Roberts, J. D. B., & Somogyi, P. (2000) · The Journal of Neuroscience · doi:10.1523/jneurosci.20-07-02512.2000 · Cited by 304 · see citing works
Flagged first, then by citations
Research works printed but not linked: 28
- Adachi N, Kohara K, Tsumoto T (2005) Difference in trafficking of brain- derived neurotrophic factor between axons and dendrites of cortical neu- rons, revealed by live-cell imaging. BMC Neurosci 6:42. CrossRef Medline · DOI
- An JJ, Gharami K, Liao GY, Woo NH, Lau AG, Vanevski F, Torre ER, Jones KR, Feng Y, Lu B, Xu B (2008) Distinct role of long 3Ј UTR BDNF mRNA in spine morphology and synaptic plasticity in hippocampal neu- rons. Cell 134:175-187. CrossRef Medline · DOI
- Bhatt DH, Zhang S, Gan WB (2009) Dendritic spine dynamics. Annu Rev Physiol 71:261-282. CrossRef Medline · DOI · Paper page
- Brummelkamp TR, Bernards R, Agami R (2002) A system for stable expres- sion of short interfering RNAs in mammalian cells. Science 296:550 -553. CrossRef Medline · DOI
- Churchill JD, Grossman AW, Irwin SA, Galvez R, Klintsova AY, Weiler IJ, Greenough WT (2002) A converging-methods approach to fragile X syndrome. Dev Psychobiol 40:323-338. CrossRef Medline · DOI
- Dean C, Liu H, Dunning FM, Chang PY, Jackson MB, Chapman ER (2009) Synaptotagmin-IV modulates synaptic function and long-term potentia- tion by regulating BDNF release. Nat Neurosci 12:767-776. CrossRef Medline · DOI
- Dieni S, Matsumoto T, Dekkers M, Rauskolb S, Ionescu MS, Deogracias R, Gundelfinger ED, Kojima M, Nestel S, Frotscher M, Barde YA (2012) BDNF and its pro-peptide are stored in presynaptic dense core vesicles in brain neurons. J Cell Biol 196:775-788. CrossRef Medline · DOI
- CN, Vigers AJ, Jones KR (2012) Genetic evidence that brain-derived neurotrophic factor mediates competitive interactions between individ- ual cortical neurons. Proc Natl Acad Sci U S A 109:19456 -19461. CrossRef Medline · DOI
- Ethell IM, Pasquale EB (2005) Molecular mechanisms of dendritic spine development and remodeling. Prog Neurobiol 75:161-205. CrossRef Medline · DOI
- Ethell IM, Irie F, Kalo MS, Couchman JR, Pasquale EB, Yamaguchi Y (2001) EphB/syndecan-2 signaling in dendritic spine morphogenesis. Neuron 31:1001-1013. CrossRef Medline · DOI · Paper page
- Harris KM (1999) Structure, development, and plasticity of dendritic spines. Curr Opin Neurobiol 9:343-348. CrossRef Medline · DOI
- Huttenlocher PR (1979) Synaptic density in human frontal cortex -devel- opmental changes and effects of aging. Brain Res 163:195-205. CrossRef Medline · DOI · Paper page
- Kaneko M, Xie Y, An JJ, Stryker MP, Xu B (2012) Dendritic BDNF synthesis is required for late-phase spine maturation and recovery of cortical re- sponses following sensory deprivation. J Neurosci 32:4790 -4802. CrossRef Medline · DOI · Paper page
- Marin-Padilla M (1967) Number and distribution of the apical dendritic spines of the layer V pyramidal cells in man. J Comp Neurol 131:475-490. CrossRef Medline · DOI
- Mataga N, Mizuguchi Y, Hensch TK (2004) Experience-dependent pruning of dendritic spines in visual cortex by tissue plasminogen activator. Neu- ron 44:1031-1041. CrossRef Medline · DOI · Paper page
- Matsuda N, Lu H, Fukata Y, Noritake J, Gao H, Mukherjee S, Nemoto T, Fukata M, Poo MM (2009) Differential activity-dependent secretion of brain-derived neurotrophic factor from axon and dendrite. J Neurosci 29:14185-14198. CrossRef Medline · DOI
- Murase K, Ryu PD, Randic M (1989) Excitatory and inhibitory amino acids and peptide-induced responses in acutely isolated rat spinal dorsal horn neurons. Neurosci Lett 103:56 -63. CrossRef Medline · DOI
- Murthy VN, Sejnowski TJ, Stevens CF (1997) Heterogeneous release properties of visualized individual hippocampal synapses. Neuron 18:599 -612. CrossRef Medline · DOI
- Nusser Z, Lujan R, Laube G, Roberts JD, Molnar E, Somogyi P (1998) Cell type and pathway dependence of synaptic AMPA receptor number and variability in the hippocampus. Neuron 21:545-559. CrossRef Medline · DOI · Paper page
- Rostami E, Krueger F, Zoubak S, Dal Monte O, Raymont V, Pardini M, Hodgkinson CA, Goldman D, Risling M, Grafman J (2011) BDNF poly- morphism predicts general intelligence after penetrating traumatic brain injury. PLoS One 6:e27389. CrossRef Medline · DOI
- Sala C, Pie ¨ch V, Wilson NR, Passafaro M, Liu G, Sheng M (2001) Regulation of dendritic spine morphology and synaptic function by Shank and Homer. Neuron 31:115-130. CrossRef Medline · DOI · Paper page
- Timmusk T, Palm K, Metsis M, Reintam T, Paalme V, Saarma M, Persson H (1993) Multiple promoters direct tissue-specific expression of the rat BDNF gene. Neuron 10:475-489. CrossRef Medline · DOI · Paper page
- Tolias KF, Bikoff JB, Kane CG, Tolias CS, Hu L, Greenberg ME (2007) The Rac1 guanine nucleotide exchange factor Tiam1 mediates EphB receptor- dependent dendritic spine development. Proc Natl Acad Sci U S A 104: 7265-7270. CrossRef Medline · DOI
- Waterhouse EG, Xu B (2009) New insights into the role of brain-derived neurotrophic factor in synaptic plasticity. Mol Cell Neurosci 42:81-89. CrossRef Medline · DOI
- Weickert CS, Hyde TM, Lipska BK, Herman MM, Weinberger DR, Kleinman JE (2003) Reduced brain-derived neurotrophic factor in prefrontal cor- tex of patients with schizophrenia. Mol Psychiatry 8:592-610. CrossRef Medline · DOI
- Yoshihara Y, De Roo M, Muller D (2009) Dendritic spine formation and stabilization. Curr Opin Neurobiol 19:146 -153. CrossRef Medline · DOI · Paper page
- Zuo Y, Lin A, Chang P, Gan WB (2005a) Development of long-term dendritic spine stability in diverse regions of cerebral cortex. Neuron 46:181-189. CrossRef Medline · DOI · Paper page
- Zuo Y, Yang G, Kwon E, Gan WB (2005b) Long-term sensory deprivation prevents dendritic spine loss in primary somatosensory cortex. Nature 436:261-265. CrossRef Medline · DOI · Paper page
Cited by
Sorted by citations
Loss of mTOR-Dependent Macroautophagy Causes Autistic-like Synaptic Pruning Deficits
Tang, G., Gudsnuk, K., Kuo, S.-H., Cotrina, M. L., Rosoklija, G., Sosunov, A., Sonders, M. S., Kanter, E., Castagna, C., Yamamoto, A., et al. (2014) · Neuron · doi:10.1016/j.neuron.2014.07.040 · Cited by 1,146 · see citing works
Colucci-D’Amato, L., Speranza, L., & Volpicelli, F. (2020) · International Journal of Molecular Sciences · doi:10.3390/ijms21207777 · Cited by 991 · see citing works
BDNF as a Promising Therapeutic Agent in Parkinson’s Disease
Palasz, E., Wysocka, A., Gasiorowska, A., Chalimoniuk, M., Niewiadomski, W., & Niewiadomska, G. (2020) · International Journal of Molecular Sciences · doi:10.3390/ijms21031170 · Cited by 504 · see citing works
De Vincenti, A. P., Ríos, A. S., Paratcha, G., & Ledda, F. (2019) · Frontiers in Cellular Neuroscience · doi:10.3389/fncel.2019.00135 · Cited by 157 · see citing works
BDNF signaling during the lifetime of dendritic spines
Zagrebelsky, M., Tacke, C., & Korte, M. (2020) · Cell and Tissue Research · doi:10.1007/s00441-020-03226-5 · Cited by 147 · see citing works
Hing, B., Sathyaputri, L., & Potash, J. B. (2018) · American Journal of Medical Genetics Part B: Neuropsychiatric Genetics · doi:10.1002/ajmg.b.32616 · Cited by 137 · see citing works
High abundance of BDNF within glutamatergic presynapses of cultured hippocampal neurons
Andreska, T., Aufmkolk, S., Sauer, M., & Blum, R. (2014) · Frontiers in Cellular Neuroscience · doi:10.3389/fncel.2014.00107 · Cited by 100 · see citing works
Darcq, E., Warnault, V, Phamluong, K., Besserer, G. M., Liu, F., & Ron, D. (2015) · Molecular Psychiatry · doi:10.1038/mp.2014.155 · Cited by 87 · see citing works
Diniz, C. R. A. F., Casarotto, P. C., Resstel, L., & Joca, S. R. L. (2018) · Neuroscience & Biobehavioral Reviews · doi:10.1016/j.neubiorev.2018.04.001 · Cited by 58 · see citing works
Gan, K. J., & Silverman, M. A. (2015) · Molecular Biology of the Cell · doi:10.1091/mbc.e14-12-1612 · Cited by 41 · see citing works
- Authors
- Orefice, L. L., Waterhouse, E. G., Partridge, J. G., Lalchandani, R. R., Vicini, S., & Xu, B.
- Affiliations
- Georgetown University Medical Center (US)
- Venue
- Journal of Neuroscience
- Publisher
- Society for Neuroscience
- Published
- 2013-07-10
- Volume
- 33
- Issue
- 28
- Pages
- 11618-11632
- ISSN
- 0270-6474 (ISSN-L)
- 1529-2401
- PMC
- PMC3724547
- OpenAlex
- W2046866871
- Cited by
- 87
- References
- 8
- Citations by year
- 2026: 1 · 2025: 3 · 2024: 3 · 2023: 6 · 2022: 3 · 2021: 2 · 2020: 9 · 2019: 5 · 2018: 7 · 2017: 11 · 2016: 6 · 2015: 11 · 2014: 17 · 2013: 3
- FWCI
- 6.05
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Locations
- Journal of Neuroscience (publishedVersion)
- Europe PMC (PubMed Central) (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- Funders
- National Institutes of Health
- National Institute of Diabetes and Digestive and Kidney Diseases (F30DK084717)
- National Institute of Neurological Disorders and Stroke (R01NS050596, R01NS073930, F31NS074840, NS074840)
- Topics
- Life Sciences › Neuroscience › Cellular and Molecular Neuroscience › Neuroscience and Neuropharmacology Research
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genetics and Neurodevelopmental Disorders
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › RNA Research and Splicing
- Keywords
- brain-derived neurotrophic factor, dendritic spines, dendritic spine morphogenesis, 3' untranslated region, hippocampal neurons, synaptic density, synaptic function
- MeSH terms
- Animals, Cells, Cultured, Dendrites, Female, Hippocampus, Humans, Male, Morphogenesis, Rats, Sprague-Dawley, Brain-Derived Neurotrophic Factor, Dendritic Spines, Mice, Rats, HEK293 Cells
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review