The DOI matches its Crossref record; 5 of the 5 references it cites were found in a registry or an index.
Natural Whisker-Guided Behavior by Head-Fixed Mice in Tactile Virtual Reality
Open accessAbstract
During many natural behaviors the relevant sensory stimuli and motor outputs are difficult to quantify. Furthermore, the high dimensionality of the space of possible stimuli and movements compounds the problem of experimental control. Head fixation facilitates stimulus control and movement tracking, and can be combined with techniques for recording and manipulating neural activity. However, head-fixed mouse behaviors are typically trained through extensive instrumental conditioning. Here we present a whisker-based, tactile virtual reality system for head-fixed mice running on a spherical treadmill. Head-fixed mice displayed natural movements, including running and rhythmic whisking at 16 Hz. Whisking was centered on a set point that changed in concert with running so that more protracted whisking was correlated with faster running. During turning, whiskers moved in an asymmetric manner, with more retracted whisker positions in the turn direction and protracted whisker movements on the other side. Under some conditions, whisker movements were phase-coupled to strides. We simulated a virtual reality tactile corridor, consisting of two moveable walls controlled in a closed-loop by running speed and direction. Mice used their whiskers to track the walls of the winding corridor without training. Whisker curvature changes, which cause forces in the sensory follicles at the base of the whiskers, were tightly coupled to distance from the walls. Our behavioral system allows for precise control of sensorimotor variables during natural tactile navigation.
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“Whisking during CL straight run (t < 0) is executed at 15 ± 2 Hz (mean ± SD) with an amplitude of just 39 ± 5° (mean ± SD) around a set point of 58 ± 5° (mean ± SD), typical for “foveal” whisking during fast locomotion (8, 28).”
From Neural correlates of perceptual decision-making in the primary somatosensory cortex (2026) · cites this paper as [28]
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“Better threshold clearance is achieved by steeper turn angles (Fig. 2D) at closer wall distances (28) reflecting the stronger evidence for the animal to turn faster to avoid anticipated collisions (29).”
From Neural correlates of perceptual decision-making in the primary somatosensory cortex (2026) · cites this paper as [28]
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Sorted by citations
Items 101–139 of 139
Meso-Py: Dual Brain Cortical Calcium Imaging in Mice during Head-Fixed Social Stimulus Presentation
Michelson, N. J., Bolaños, F., Bolaños, L. A., Balbi, M., LeDue, J. M., & Murphy, T. H. (2023) · eNeuro · doi:10.1523/eneuro.0096-23.2023 · Cited by 12
“Detailed analyses of whisker movements in mice typically use camera acquisition rates of ; 500 fps (Sofroniew et al., 2014; Mayrhofer al., 2019).”
MethodAn Intranet of Things approach for adaptable control of behavioral and navigation-based experiments
Bowler, J. C., Zakka, G., Yong, H. C., Li, W., Rao, B. Y., Liao, Z., Priestley, J. B., & Losonczy, A. (2024) · eLife · doi:10.7554/elife.97433 · Cited by 5
“The observed differences in the properties of VR and TM place cells may be the result of the absence of proximal visual cues and tactile cues (which are speculated to be more salient than visual cues) during VR tasks ( Knierim and Rao, 2003 ; Renaudineau et al., 2007 ; Sofroniew et al., 2014 ).”
Behavioral adaptations after unilateral whisker denervation
Wright, P., McCall, E. C., Collier, S., Johnson, F. R., Iyer, L., Koretsky, A. P., & Petrus, E. (2025) · Behavioural Brain Research · doi:10.1016/j.bbr.2025.115435 · Cited by 2
“Headfixed mice use their whiskers [25,56] to identify differences in object texture [13], object locations [22,43], and aperture distances [35].”
Quantum Brain Dynamics and Virtual Reality
Nishiyama, A., Tanaka, S., & Tuszyński, J. A. (2024) · Biosystems · doi:10.1016/j.biosystems.2024.105259 · Cited by 3
Pre-neuronal processing of haptic sensory cues via dispersive high-frequency vibrational modes
Ding, Y., & Vlasov, Y. A. (2023) · Scientific Reports · doi:10.1038/s41598-023-40675-8 · Cited by 2
“Active back and forth rhythmic movement of whiskers over objects (whisking) is used to produce a neural representation of a complex tactile scenes enabling rodents to locate objects (1-3), to perform object recognition (4), to guide their locomotion along walls (5, 6), and to navigate in their natural habitat of dark…”
BackgroundMethodPersistent Firing Neurons in the Medial Septum Drive Arousal and LocomotionPreprint
Marosi, E. L., Korvasová, K., Ludwig, F., Kaneko, H., Sosulina, L., Tetzlaff, T., Remy, S., & Mikulovic, S. (2021) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2021.04.23.441122 · Cited by 2
“In rodents, for example, whisking—a tactile sensory behavior—emerges several milliseconds before locomotion and correlates with locomotor speed 1 .”
EyeLoop: An open-source, high-speed eye-tracker designed for dynamic experimentsPreprint
Arvin, S., Rasmussen, R., & Yonehara, K. (2020) · bioRxiv · doi:10.1101/2020.07.03.186387 · Cited by 2
“, by head movements directed by attention 31 [4], whiskers scanning the immediate proximity [5], the nose sniffing aromas [6], or by deformation of 32 the ears [7].”
BackgroundMazeMaster: an open-source Python-based software package for controlling virtual reality experimentsPreprint
Bexter, A., & Kampa, B. (2020) · bioRxiv · doi:10.1101/2020.01.27.921148 · Cited by 2
“A study by [11] studied whisker-guided locomotion by using movable walls on both sides of the animal to simulate tunnel walls.”
BackgroundA spherical treadmill system to train head-fixed adult rats
Fernández, A. M. M. M., Burman, A., Cáceres, A. I. M., Mininni, C. J., Zanutto, B. S., & Lew, S. E. (2017) · Journal of Neuroscience Methods · doi:10.1016/j.jneumeth.2017.12.018 · Cited by 3
Recording Identified Neurons in Awake and Anesthetized Rodents
Tukker, J. J. (2018) · Springer series in computational neuroscience · doi:10.1007/978-3-319-99103-0_9 · Cited by 2
Neural correlates of perceptual decision-making in the primary somatosensory cortex
Armstrong, A. G., & Vlasov, Y. (2026) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2514107123 · Cited by 1
“…characteristic coordinated sequence of diagonal LH-RF and RH-LF strides observed corresponds to trotting, the natural gait that mice produce (37) to accommodate speeds faster than 20 cm/s. Individual strides of all limbs are also detected as periodic oscillations (28) in lateral acceleration (Fig.”
InfluentialCortical circuits for whisker sensory perception—From barrel columns to brain-wide interactions
Petersen, C. C. H. (2026) · Current Opinion in Neurobiology · doi:10.1016/j.conb.2026.103196 · Cited by 1
A hybrid micro-ECoG for functionally targeted multi-site and multi-scale investigation
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“31,32 40 However the field-of-view of most microscopes is still limited to imaging one local population (but see, Sofroniew et al., 41 Yu et al., 42 and Chen et al. 43 ), and population imaging does not yet permit the reliable recording of single action potentials at the millisecond temporal scale.”
Cerebellar activity is triggered by reach endpoint during learning of a complex locomotor task
Andrianarivelo, A., Stein, H., Gabillet, J., Batifol, C., Jalil, A., Cayco-Gajic, N. A., & Graupner, M. (2026) · Nature Communications · doi:10.1038/s41467-026-74823-1 · Cited by 2
“Experimental procedures were approved by the French Ministry of Higher Education, Research and Innovation (APA-FIS#11158-2017041316199 v8) in agreement with the European Directive 86/609/EEC and by the ethical committee of the Université Paris Cité.”
A Whisker-Like 2-D Contact Sensor for Environmental Perception of Mobile Robots
Luo, J., Yao, S., Yu, T., Wang, Y., Wang, H., & Chen, G. (2025) · IEEE Transactions on Industrial Electronics · doi:10.1109/tie.2025.3598187
“Among these different sensing methods, contact sensing through whiskers plays a pivotal role for certain species, such as rodents and pin-nipeds, enabling obstacle detection and navigation, particularly under conditions where other sensory inputs are limited [1], [2], [3], [4].”
Bauer, S., Zhai, P., van Wingerden, N., Zhao, H., & Romano, V. (2026) · Frontiers in Neural Circuits · doi:10.3389/fncir.2025.1706704 · Cited by 1
Neural Correlates of Perceptual Decision Making in Primary Somatosensory Cortex
Armstrong, A. G., & Vlasov, Y. D. (2025) · bioRxiv · doi:10.1101/2025.03.29.646003 · Cited by 1
“Whisking during the CL straight run (t 0) is executed at 18±4Hz (mean ± s.d.) with an amplitude of just 20° ± 5 (mean ± s.d.) around a set point of 58° ± 5 (mean ± s.d.) that is typical for a “foveal” whisking generated during fast locomotion 14,20 .”
InfluentialSridhar, S., Lowet, E., Gritton, H., Freire, J., Zhou, C., Liang, F., & Han, X. (2024) · Nature Communications · doi:10.1038/s41467-024-52664-0 · Cited by 1
“…rhythmicity and improved the coupling between stepping and LFP beta Since locomotion in mice and humans occurs in the delta frequency range 1 , we calculated the spectral power of the treadmill speed, as treadmill speed fl uctuations closely track animals stepping cycles during running 8,60 .”
Jost-Mousseau, T., Chalabi, M., Shulz, D., & Férézou, I. (2023) · Neurophotonics · doi:10.1117/1.nph.10.1.015009 · Cited by 1
Liu, J., Maximov, K., & Kanold, P. (2022) · bioRxiv · doi:10.1371/journal.pone.0323114 · Cited by 1
“Head-fixation training combined with modern electrophysiology and imaging techniques has provided a wealth of new knowledge on how the brain functions to support an assortment of behaviors [5–10].”
Sensory adaptation in the barrel cortex during active sensation in the awake, behaving mouse
Rodriguez, A. C., Loft, M. S. E., Schiessl, I., Maravall, M., & Petersen, R. (2022) · bioRxiv · doi:10.1101/2022.07.07.499259 · Cited by 1
“…is also consistent with extensive evidence for active sensing in animals with mobile whiskers, including rats, mice and aquatic mammals (Arkley et al., 2014; Campagner et al., 2019; Grant et al., 2013; Mitchinson et al., 2007; O’Connor et al., 2010; Sofroniew et al., 2014; Towal & Hartmann, 2006).”
BackgroundThe RIFF: an automated environment for studying the neural basis of auditory-guided complex behaviorPreprint
Jankowski, M. M., Polterovich, A., Kazakov, A., Niediek, J., & Nelken, I. (2021) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2021.05.25.445564 · Cited by 1
“Virtual reality setups have been developed to flexibly study neural activity during behavior (Aghajan et al., 2015; Dombeck et al., 2007, 2010; Go et al., 2021; Harvey et al., 2009; Hölscher et al., 2005; Keller et al., 2012; Minderer et al., 2016; Radvansky & Dombeck, 2018; Sofroniew et al., 2014).”
Predicting behavior from eye movement and whisking asymmetry
Bergmann, R., Sehara, K., Dominiak, S. E., Kremkow, J., Larkum, M., & Sachdev, R. N. (2021) · bioRxiv · doi:10.1101/2021.02.11.430785 · Cited by 1
“In rodents, exploration of the environment is often linked to movement of the head and whiskers (Arkley et al., 2014; Towel and Hartmann, 2006; Hartmann et al., 2003; Sofroniew et al., 2014), with facial movements linked to activity observed in widespread areas of cortex (Churchland et al.”
BackgroundInfluentialDual brain cortical calcium imaging reveals social interaction-specific correlated activity in micePreprint
Michelson, N. J., Bolaños, F., Bolaños, L. A., Balbi, M., LeDue, J. M., & Murphy, T. H. (2018) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.20383/101.0303 · Cited by 4
Prediction of primary somatosensory neuron activity during active tactile exploration
Campagner, D., Evans, M. H., Bale, M., Erskine, A., & Petersen, R. (2015) · bioRxiv · doi:10.1101/024364 · Cited by 1
“Bending moment can permit wall following (Sofroniew et al., 2014) and, if integrated across whiskers, can in principle be used both to infer object shape (Solomon and Hartmann, 2006) and to map the spatial structure of the environment (Fox et al.”
Armstrong, A. G., & Vlasov, Y. (2026) · The Journal of Neuroscience · doi:10.1523/jneurosci.0930-25.2026 · Cited by 1
Arden, F., Henneken, P., Turi, Z., & Vlachos, A. (2026) · bioRxiv · doi:10.64898/2026.08.11.744141
Peri-head distance coding in the mouse brainstem
Xiao, W., Severson, K. S., Zheng, H., Chen, K., Thompson, P. M., Levy, M. S., Choi, S., Zhao, S., Takatoh, J., Prevosto, V., et al. (2026) · Neuron · doi:10.1016/j.neuron.2026.05.027
Paranjape, P. S., Ghohaki, T. M., & Inayat, S. (2026) · bioRxiv · doi:10.1038/s41598-026-52322-z
Learnable Diffusion Framework for Mouse V1 Neural Decoding
Deng, K., Schwendeman, P. S., & Guan, Y. (2026) · Advancement of science · doi:10.1002/advs.202520220
“In particular, mice have long served as model organisms for non-primate visual systems [ 12, 13 ], and advances in two-photon calcium imaging with craniotomy now allow researchers to record activity from individual neurons, providing a level of detail not accessible with population-level measures […”
Distinct brain regions map olfactory and visual spaces
Davoudi, H., Climer, J. R., Issa, J. B., & Dombeck, D. A. (2026) · Neuron · doi:10.1016/j.neuron.2026.03.008 · Cited by 1
Pattern separation in cerebellar-targeted whisking pre-motor nuclei
Bauer, S., Zhai, P., van Wingerden, N., & Romano, V. (2025) · bioRxiv · doi:10.1101/2025.09.16.676487
“In addition, whisker behaviour can consist of non-periodic movements that precede head and body movements (Dominiak et al., 2019; Sofroniew, Cohen, Lee, & Svoboda, 2014; Towal & Hartmann, 2006).”
Object detection through dynamic motor-sensory convergencePreprint
Nelinger, G., Saraf-Sinik, I., & Ahissar, E. (2025) · bioRxiv · doi:10.1101/2025.07.16.665117
Response and sample bridging in a primate short-term memory task
Sloin, H. E., & Stark, E. (2019) · Neurobiology of Learning and Memory · doi:10.1016/j.nlm.2019.107106
Tyler, T. (2019) · Parallax · doi:10.1080/13534645.2020.1731011
What can facial mechanoreceptors tell the mouse brain about whisking?
Severson, K. S., Xu, D., Yang, H.-D., & O'Connor, D. H. (2018) · bioRxiv · doi:10.1101/402883
Behavioral and electrophysiological study of spatial pattern discrimination in the rat
Kerekes, P. (2017) · doi:10.70675/493321cbzeb7cz4538z8939z0efbfc13f5b2
“Recently, a walltracking task in virtual environments has been carried out (Sofroniew et al. 2014), allowing a precise control of the stimulus radial distance freely-running mice.”
BackgroundWu, P. (2016) · International Congress on Information and Communication Technology · doi:10.1109/inventive.2016.7823249
“Set of audio, video, and share data interactive multimedia communication is a kind of distributed real-time multimedia communication application, it not only with real-time audio and video that is nearly continuous media, but also make full use of other multimedia information [1-2].”
BackgroundVisually induced and spontaneous behavior in the zebrafish larva
Jouary, A. (2015) · theses.fr (ABES) · doi:10.70675/8b593f38z6c91z4070z8affz7bfe85caee25
“VR has been used for decades to study the neural basis of behavior and has been adapted to several animal models and different sensory modalities (Dombeck and Reiser (2012), Sofroniew et al. (2014)).”
Method
Metadata
- Authors
- Sofroniew, N. J., Cohen, J. D., Lee, A. K., & Svoboda, K.
- Affiliations
- Howard Hughes Medical Institute (US)
- Venue
- The Journal of Neuroscience
- Publisher
- Society for Neuroscience
- Published
- 2014-07-16
- Volume
- 34
- Issue
- 29
- Pages
- 9537-9550
- ISSN
- 0270-6474 (ISSN-L)
- 1529-2401
- PMC
- PMC4099538
- OpenAlex
- W2051361380
- Cited by
- 165
- References
- 55
- Citations by year
- 2026: 11 · 2025: 9 · 2024: 12 · 2023: 31 · 2022: 10 · 2021: 11 · 2020: 10 · 2019: 23 · 2018: 7 · 2017: 15 · 2016: 17 · 2015: 7 · 2014: 2
- FWCI
- 7.56
- Type
- journal article
- Language
- en
- Open access
- hybrid
- doi.org
- Licence
- Locations
- Journal of Neuroscience (publishedVersion, cc-by-nc-sa)
- Europe PMC (PubMed Central) (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- Funders
- Howard Hughes Medical Institute
- Topics
- Life Sciences › Neuroscience › Cognitive Neuroscience › Tactile and Sensory Interactions
- Life Sciences › Neuroscience › Cognitive Neuroscience › Motor Control and Adaptation
- Social Sciences › Psychology › Experimental and Cognitive Psychology › Multisensory perception and integration
- Keywords
- head-fixed mice, whisking, running speed, turning behavior, tactile navigation, sensorimotor coupling, treadmill running, natural behavior
- MeSH terms
- Channelrhodopsins, Afferent Pathways, Animals, Female, Male, Mice, Inbred C57BL, Mice, Transgenic, Motor Activity, Psychomotor Performance, Sensory Deprivation, Touch, User-Computer Interface, Vibrissae, Video Recording, Visual Perception, Head Movements, Vesicular Inhibitory Amino Acid Transport Proteins, Mice, Epithelial Sodium Channels, Optogenetics
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Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
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