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The Two Isoforms of the Caenorhabditis elegans Leukocyte-Common Antigen Related Receptor Tyrosine Phosphatase PTP-3 Function Independently in Axon Guidance and Synapse Formation
Open accessAbstract
Leukocyte-common antigen related (LAR)-like phosphatase receptors are conserved cell adhesion molecules that function in multiple developmental processes. The Caenorhabditis elegans ptp-3 gene encodes two LAR family isoforms that differ in the extracellular domain. We show here that the long isoform, PTP-3A, localizes specifically at synapses and that the short isoform, PTP-3B, is extrasynaptic. Mutations in ptp-3 cause defects in axon guidance that can be rescued by PTP-3B but not by PTP-3A. Mutations that specifically affect ptp-3A do not affect axon guidance but instead cause alterations in synapse morphology. Genetic double-mutant analysis is consistent with ptp-3A acting with the extracellular matrix component nidogen,nid-1, and the intracellular adaptor α-liprin,syd-2.nid-1 and syd-2 are required for the recruitment and stability of PTP-3A at synapses, and mutations in ptp-3 or nid-1 result in aberrant localization of SYD-2. Overexpression of PTP-3A is able to bypass the requirement for nid-1 for the localization of SYD-2 and RIM. We propose that PTP-3A acts as a molecular link between the extracellular matrix and α-liprin during synaptogenesis.
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“Together, these data established that active zone formation with recruitment of synaptic vesicles and of LAR-type receptor phosphotyrosine phosphatases requires α-liprin, possibly by simultaneous binding of α-liprin to the receptor phosphotyrosine phosphatase, RIM, ELKS, Syd-1, and itself.”
From The Presynaptic Active Zone (2012) · cites this paper as Ackley et al., 2005
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THE GENETICS OF CAENORHABDITIS ELEGANS
Brenner, S. (1974) · Genetics · doi:10.1093/genetics/77.1.71 · Cited by 15,220
C. elegans : des neurones et des gènes
Gally, C., & Bessereau, J. (2003) · médecine/sciences · doi:10.1051/medsci/20031967725 · Cited by 3,260
Mello, C. C., Kramer, J. M., Stinchcomb, D. T., & Ambros, V. (1991) · The EMBO Journal · doi:10.1002/j.1460-2075.1991.tb04966.x · Cited by 3,095
The unc-86 gene product couples cell lineage and cell identity in C. elegans
Finney, M., & Ruvkun, G. (1990) · Cell · doi:10.1016/0092-8674(90)90493-x · Cited by 590
Kinesin-related gene unc-104 is required for axonal transport of synaptic vesicles in C. elegans
Hall, D. H., & Hedgecock, E. M. (1991) · Cell · doi:10.1016/0092-8674(91)90391-b · Cited by 564
Synaptic function is impaired but not eliminated in C. elegans mutants lacking synaptotagmin
Nonet, M. L., Grundahl, K. M., Meyer, B. J., & Rand, J. B. (1993) · Cell · doi:10.1016/0092-8674(93)90357-v · Cited by 537
Debant, A., Serra‐Pages, C., Seipel, K., O'Brien, S., Tang, M. H. Y., Park, S. H., & Streuli, M. (1996) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.93.11.5466 · Cited by 467
The liprin protein SYD-2 regulates the differentiation of presynaptic termini in C. elegans
Zhen, M., & Jin, Y. (1999) · Nature · doi:10.1038/43886 · Cited by 379
Self-citationNonet, M. L., Staunton, J. E., Kilgard, M. P., Fergestad, T., Hartwieg, E. A., Horvitz, H. R., Jørgensen, E. M., & Meyer, B. J. (1997) · Journal of Neuroscience · doi:10.1523/jneurosci.17-21-08061.1997 · Cited by 354
The Transmembrane Tyrosine Phosphatase DLAR Controls Motor Axon Guidance in Drosophila
Krueger, N. X., Vactor, D. V., Wan, H., Gelbart, W. M., Goodman, C. S., & Saito, H. (1996) · Cell · doi:10.1016/s0092-8674(00)81036-3 · Cited by 328
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- 10.1038/43889 · DOI
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Items 101–113 of 113
The Role of Receptor Protein Tyrosine Phosphatases in Axonal Pathfinding
Stoker, A. W. (2010) · Elsevier eBooks · doi:10.1016/b978-0-12-374145-5.00238-2
The F-box Protein FSN-1 Governs Presynaptic Development in Caenorhabditis elegans
Watkins, N. A. (2011) · TSpace (University of Toronto)
Shanmugam, M. M., Barmaver, S. N., Huang, H., & Wagner, O. I. (2019) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/723288
Presynaptic PTPσ organizes neurotransmitter release machinery at excitatory synapsesPreprint
Han, K. A., Lee, H., Lim, D., Shin, J., Yoon, T. H., Lee, C., Rhee, J., Liu, X., Um, J. W., Choi, S., et al. (2020) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2020.01.10.901546
Gupton, S. L., & Menon, S. (2018) · Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature · doi:10.3410/f.727742711.793552053
Mizumoto, K. (2018) · Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature · doi:10.3410/f.733205067.793552278
Extracellular matrix of the nervous system
Nazir, S., Feresten, A. H., Lin, L. D., Hutter, H., & Julian, L. M. (2024) · Elsevier eBooks · doi:10.1016/b978-0-323-95730-4.00002-0
McNeill, E. M., Thompson, C., Berke, B., Chou, V., Rusch, J., Duckworth, A. M., DeProto, J., Taylor, A., Gates, J., Gertler, F. B., et al. (2020) · Figshare · doi:10.6084/m9.figshare.11998752
McNeill, E. M., Thompson, C., Berke, B., Chou, V., Rusch, J., Duckworth, A. M., DeProto, J., Taylor, A., Gates, J., Gertler, F. B., et al. (2020) · Figshare · doi:10.6084/m9.figshare.11998749
The claudin-like molecule CLC-3 regulates cholinergic neurotransmission in Caenorhabditis elegans
Ahuja, A., Rastogi, A., Liu, H., Sahu, A. R., Kumar, H., Jayaraj, J., Hu, Z., & Babu, K. (2026) · Genetics · doi:10.1093/genetics/iyag070
Pathophysiological consequences of a Fragile X missense mutation
Garcia, M. P. (2020) · theses.fr (ABES) · doi:10.70675/b8e86263z5926z4a83zbaf6z0f61bf2d15f9
Macrocyclic and linear peptides promote LAR dimerization and neurite outgrowth
Yasumura, M., Zhang, Y., Iguchi, T., Fujimura, N., Colas, K., Oka, Y., Oshikane, H., Tsuyoshi Inoue, A., Suga, H., & Sato, M. (2026) · Journal of Biological Chemistry · doi:10.1016/j.jbc.2026.113340
Development of the Drosophila and C. Elegans Neuromuscular Junctions
Epps, H. V., & Jin, Y. (2006) · Springer eBooks · doi:10.1007/978-0-387-32562-0_4
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Metadata
- Authors
- Ackley, B. D., Harrington, R. J., Hudson, M. L., Williams, L., Kenyon, C. J., Chisholm, A. D., & Jin, Y.
- Affiliations
- University of California, Santa Cruz (US)
- University of California, San Francisco (US)
- Howard Hughes Medical Institute (US)
- Corresponding author
- Jin, Yishi
- Venue
- The Journal of Neuroscience
- Publisher
- Society for Neuroscience
- Published
- 2005-08-17
- Volume
- 25
- Issue
- 33
- Pages
- 7517-7528
- ISSN
- 0270-6474 (ISSN-L)
- 1529-2401
- PMC
- PMC6725402
- OpenAlex
- W1984882339
- Cited by
- 113
- References
- 48
- Citations by year
- 2026: 2 · 2025: 3 · 2024: 4 · 2023: 4 · 2022: 5 · 2021: 6 · 2020: 12 · 2019: 6 · 2018: 10 · 2017: 3 · 2015: 7 · 2014: 4 · 2013: 4 · 2012: 4
- FWCI
- 2.66
- Type
- journal article
- Language
- en
- Open access
- hybrid
- doi.org
- Licence
- Locations
- Journal of Neuroscience (publishedVersion, cc-by-nc-sa)
- Europe PMC (PubMed Central) (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- Funders
- Howard Hughes Medical Institute (NS35546)
- Muscular Dystrophy Association
- National Institutes of Health (GM54657)
- National Institute of General Medical Sciences (GM54657, R01GM054657)
- National Institute of Neurological Disorders and Stroke (R37NS035546, R01NS035546, NS35546)
- Topics
- Life Sciences › Neuroscience › Cellular and Molecular Neuroscience › Axon Guidance and Neuronal Signaling
- Life Sciences › Neuroscience › Cellular and Molecular Neuroscience › Neuroscience and Neuropharmacology Research
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Developmental Biology and Gene Regulation
- Keywords
- Caenorhabditis elegans, isoform-specific function, axon guidance, synaptogenesis, synaptic morphology, nidogen, RIM, extracellular matrix, synaptic localization, adhesion molecules
- MeSH terms
- Animals, Axons, Mutation, Nerve Tissue Proteins, Receptors, Cell Surface, Synapses, Protein Tyrosine Phosphatases, Caenorhabditis elegans, Protein Isoforms, Caenorhabditis elegans Proteins, Animals, Genetically Modified, Intracellular Signaling Peptides and Proteins, Protein Tyrosine Phosphatase, Non-Receptor Type 11, Receptor-Like Protein Tyrosine Phosphatases, Class 2
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