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Recognition of centromere‐specific histone Cse4 by the inner kinetochore Okp1‐Ame1 complex
Open accessPublished version of a preprint
Abstract
Successful mitosis depends on the timely establishment of correct chromosomal attachments to microtubules. The kinetochore, a modular multiprotein complex, mediates this connection by recognizing specialized chromatin containing a histone H3 variant called Cse4 in budding yeast and CENP‐A in vertebrates. Structural features of the kinetochore that enable discrimination between Cse4/CENP‐A and H3 have been identified in several species. How and when these contribute to centromere recognition and how they relate to the overall structure of the inner kinetochore are unsettled questions. More generally, this molecular recognition ensures that only one kinetochore is built on each chromatid and that this happens at the right place on the chromatin fiber. We have determined the crystal structure of a Cse4 peptide bound to the essential inner kinetochore Okp1‐Ame1 heterodimer from budding yeast. The structure and related experiments show in detail an essential point of Cse4 contact and provide information about the arrangement of the inner kinetochore.
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Highly accurate protein structure prediction with AlphaFold
Jumper, J., Evans, R., Pritzel, A., Green, T., Figurnov, M., Ronneberger, O., Tunyasuvunakool, K., Bates, R., Žídek, A., Potapenko, A., et al. (2021) · Nature · doi:10.1038/s41586-021-03819-2 · Cited by 43,764
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Research works printed but not linked: 34
- Adams PD, Afonine PV, Bunkoczi G, Chen VB, Davis IW, Echols N, Headd JJ, Hung LW, Kapral GJ, Grosse‐Kunstleve RW et al (2010) PHENIX: a comprehensive Python‐based system for macromolecular structure solution. Acta Crystallogr D Biol Crystallogr 66: 213–221 · DOI · Paper page
- de Albuquerque CP, Liang J, Gaut NJ, Zhou H (2016) Molecular circuitry of the SUMO (small ubiquitin‐like modifier) pathway in controlling sumoylation homeostasis and suppressing genome rearrangements. J Biol Chem 291: 8825–8835 · DOI
- Anedchenko EA, Samel‐Pommerencke A, Tran Nguyen TM, Shahnejat‐Bushehri S, Popsel J, Lauster D, Herrmann A, Rappsilber J, Cuomo A, Bonaldi T et al (2019) The kinetochore module Okp1(CENP‐Q)/Ame1(CENP‐U) is a reader for N‐terminal modifications on the centromeric histone Cse4(CENP‐A). EMBO J 38: e98991 · DOI
- Boeckmann L, Takahashi Y, Au WC, Mishra PK, Choy JS, Dawson AR, Szeto MY, Waybright TJ, Heger C, McAndrew C et al (2013) Phosphorylation of centromeric histone H3 variant regulates chromosome segregation in Saccharomyces cerevisiae. Mol Biol Cell 24: 2034–2044 · DOI
- Cheeseman IM, Anderson S, Jwa M, Green EM, Kang J, Yates JR 3rd, Chan CS, Drubin DG, Barnes G (2002) Phospho‐regulation of kinetochore‐microtubule attachments by the Aurora kinase Ipl1p. Cell 111: 163–172 · DOI
- Chen Y, Baker RE, Keith KC, Harris K, Stoler S, Fitzgerald‐Hayes M (2000) The N terminus of the centromere H3‐like protein Cse4p performs an essential function distinct from that of the histone fold domain. Mol Cell Biol 20: 7037–7048 · DOI
- De Wulf P, McAinsh AD, Sorger PK (2003) Hierarchical assembly of the budding yeast kinetochore from multiple subcomplexes. Genes Dev 17: 2902–2921 · DOI
- Dendooven T, Zhang Z, Yang J, McLaughlin SH, Schwab J, Scheres SHW, Yatskevich S, Barford D (2023) Cryo‐EM structure of the complete inner kinetochore of the budding yeast point centromere. Sci Adv 9: eadg7480 · DOI · Paper page
- Dimitrova YN, Jenni S, Valverde R, Khin Y, Harrison SC (2016) Structure of the MIND complex defines a regulatory focus for yeast kinetochore assembly. Cell 167: 1014–1027 · DOI
- Emsley P, Lohkamp B, Scott WG, Cowtan K (2010) Features and development of Coot. Acta Crystallogr D Biol Crystallogr 66: 486–501 · DOI · Paper page
- Evans PR, Murshudov GN (2013) How good are my data and what is the resolution? Acta Crystallogr D Biol Crystallogr 69: 1204–1214 · DOI
- Fischbock‐Halwachs J, Singh S, Potocnjak M, Hagemann G, Solis‐Mezarino V, Woike S, Ghodgaonkar‐Steger M, Weissmann F, Gallego LD, Rojas J et al (2019) The COMA complex interacts with Cse4 and positions Sli15/Ipl1 at the budding yeast inner kinetochore. Elife 8: e42879 · DOI
- Guan R, Lian T, Zhou BR, He E, Wu C, Singleton M, Bai Y (2021) Structural and dynamic mechanisms of CBF3‐guided centromeric nucleosome formation. Nat Commun 12: 1763 · DOI
- Hamilton GE, Helgeson LA, Noland CL, Asbury CL, Dimitrova YN, Davis TN (2020) Reconstitution reveals two paths of force transmission through the kinetochore. Elife 9: e56582
- Hewawasam G, Shivaraju M, Mattingly M, Venkatesh S, Martin‐Brown S, Florens L, Workman JL, Gerton JL (2010) Psh1 is an E3 ubiquitin ligase that targets the centromeric histone variant Cse4. Mol Cell 40: 444–454 · DOI
- Hinshaw SM, Harrison SC (2019) The structure of the Ctf19c/CCAN from budding yeast. Elife 8: e44239
- Hinshaw SM, Harrison SC (2020) The structural basis for kinetochore stabilization by Cnn1/CENP‐T. Curr Biol 30: e3423 · DOI
- Hinshaw SM, Quan Y, Cai J, Zhou AL, Zhou H (2023) Multi‐site phosphorylation of yeast Mif2/CENP‐C promotes inner kinetochore assembly. Curr Biol 33: 688–696 · DOI
- Hoffmann G, Samel‐Pommerencke A, Weber J, Cuomo A, Bonaldi T, Ehrenhofer‐Murray AE (2018) A role for CENP‐A/Cse4 phosphorylation on serine 33 in deposition at the centromere. FEMS Yeast Res 18 https://doi.org/10.1093/femsyr/fox094 · DOI
- Hornung P, Troc P, Malvezzi F, Maier M, Demianova Z, Zimniak T, Litos G, Lampert F, Schleiffer A, Brunner M et al (2014) A cooperative mechanism drives budding yeast kinetochore assembly downstream of CENP‐A. J Cell Biol 206: 509–524 · DOI
- Ichikawa Y, Saitoh N, Kaufman PD (2018) An asymmetric centromeric nucleosome. Elife 7: e37911 · DOI
- Lichten M (2014) Tetrad, random spore, and molecular analysis of meiotic segregation and recombination. Methods Mol Biol 1205: 13–28 · DOI
- Migl D, Kschonsak M, Arthur CP, Khin Y, Harrison SC, Ciferri C, Dimitrova YN (2020) Cryoelectron microscopy structure of a yeast centromeric nucleosome at 2.7 a resolution. Structure 28: 363–370 · DOI
- Mishra PK, Wood H, Stanton J, Au WC, Eisenstatt JR, Boeckmann L, Sclafani RA, Weinreich M, Bloom KS, Thorpe PH et al (2021) Cdc7‐mediated phosphorylation of Cse4 regulates high‐fidelity chromosome segregation in budding yeast. Mol Biol Cell 32: ar15 · DOI
- Ohkuni K, Levy‐Myers R, Warren J, Au WC, Takahashi Y, Baker RE, Basrai MA (2018) N‐terminal sumoylation of centromeric histone H3 variant Cse4 regulates its proteolysis to prevent mislocalization to non‐centromeric chromatin. G3 (Bethesda) 8: 1215–1223 · DOI
- Ortiz J, Stemmann O, Rank S, Lechner J (1999) A putative protein complex consisting of Ctf19, Mcm21, and Okp1 represents a missing link in the budding yeast kinetochore. Genes Dev 13: 1140–1155 · DOI
- Pot I, Knockleby J, Aneliunas V, Nguyen T, Ah‐Kye S, Liszt G, Snyder M, Hieter P, Vogel J (2005) Spindle checkpoint maintenance requires Ame1 and Okp1. Cell Cycle 4: 1448–1456 · DOI
- Ranjitkar P, Press MO, Yi X, Baker R, MacCoss MJ, Biggins S (2010) An E3 ubiquitin ligase prevents ectopic localization of the centromeric histone H3 variant via the centromere targeting domain. Mol Cell 40: 455–464 · DOI
- Samel A, Cuomo A, Bonaldi T, Ehrenhofer‐Murray AE (2012) Methylation of CenH3 arginine 37 regulates kinetochore integrity and chromosome segregation. Proc Natl Acad Sci U S A 109: 9029–9034 · DOI
- Schmitzberger F, Richter MM, Gordiyenko Y, Robinson CV, Dadlez M, Westermann S (2017) Molecular basis for inner kinetochore configuration through RWD domain‐peptide interactions. EMBO J 36: 3458–3482 · DOI
- Winter G, Beilsten‐Edmands J, Devenish N, Gerstel M, Gildea RJ, McDonagh D, Pascal E, Waterman DG, Williams BH, Evans G (2022) DIALS as a toolkit. Protein Sci 31: 232–250 · DOI
- Wisniewski J, Hajj B, Chen J, Mizuguchi G, Xiao H, Wei D, Dahan M, Wu C (2014) Imaging the fate of histone Cse4 reveals de novo replacement in S phase and subsequent stable residence at centromeres. Elife 3: e02203 · DOI
- Yan K, Zhang Z, Yang J, McLaughlin SH, Barford D (2018) Architecture of the CBF3‐centromere complex of the budding yeast kinetochore. Nat Struct Mol Biol 25: 1103–1110 · DOI
- Yan K, Yang J, Zhang Z, McLaughlin SH, Chang L, Fasci D, Ehrenhofer‐Murray AE, Heck AJR, Barford D (2019) Structure of the inner kinetochore CCAN complex assembled onto a centromeric nucleosome. Nature 574: 278–282 · DOI
Metadata
- Authors
- Deng, S., Cai, J., Harrison, S. C., Zhou, H., & Hinshaw, S. M.
- Affiliations
- Howard Hughes Medical Institute (US)
- University of California San Diego (US)
- Stanford Medicine (US)
- Corresponding author
- Hinshaw, Stephen M
- Venue
- The EMBO Reports
- Published
- 2023-11-20
- Volume
- 24
- Issue
- 12
- Pages
- e57702-e57702
- ISSN
- 1469-221X (ISSN-L)
- 1469-3178
- PMC
- PMC10702835
- OpenAlex
- W4388852205
- Cited by
- 10
- References
- 1
- Citations by year
- 2026: 4 · 2025: 2 · 2024: 2 · 2023: 2
- FWCI
- 1.44
- Type
- journal article
- Language
- en
- Open access
- hybrid
- doi.org
- Locations
- EMBO Reports (publishedVersion, cc-by)
- bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion, cc-by)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- eScholarship (California Digital Library) (submittedVersion)
- OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information) (submittedVersion)
- Funders
- DOE | NNSA | LDRD | Argonne National Laboratory (DE‐AC02‐06CH11357)
- HHS | NIH | National Institute of General Medical Sciences (GM124165, GM116897)
- Howard Hughes Medical Institute
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Cell Biology › Microtubule and mitosis dynamics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics and Chromatin Dynamics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Nuclear Structure and Function
- Keywords
- Cse4, inner kinetochore, histone H3 variant, CENH3, kinetochore-microtubule attachment, mitosis, Saccharomyces cerevisiae, crystal structure, kinetochore assembly
- MeSH terms
- Centromere Protein A, Centromere, Chromatin, Chromosomal Proteins, Non-Histone, DNA-Binding Proteins, Saccharomycetales, Histones, Microtubule-Associated Proteins, Kinetochores, Cell Cycle Proteins, Saccharomyces cerevisiae Proteins
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