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Genetic Architecture of Flowering Time in Maize As Inferred From Quantitative Trait Loci Meta-analysis and Synteny Conservation With the Rice Genome
Abstract
Genetic architecture of flowering time in maize was addressed by synthesizing a total of 313 quantitative trait loci (QTL) available for this trait. These were analyzed first with an overview statistic that highlighted regions of key importance and then with a meta-analysis method that yielded a synthetic genetic model with 62 consensus QTL. Six of these displayed a major effect. Meta-analysis led in this case to a twofold increase in the precision in QTL position estimation, when compared to the most precise initial QTL position within the corresponding region. The 62 consensus QTL were compared first to the positions of the few flowering-time candidate genes that have been mapped in maize. We then projected rice candidate genes onto the maize genome using a synteny conservation approach based on comparative mapping between the maize genetic map and japonica rice physical map. This yielded 19 associations between maize QTL and genes involved in flowering time in rice and in Arabidopsis. Results suggest that the combination of meta-analysis within a species of interest and synteny-based projections from a related model plant can be an efficient strategy for identifying new candidate genes for trait variation.
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Statistical significance for genomewide studies
Storey, J. D., & Tibshirani, R. (2003) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1530509100 · Cited by 9,692
Cited by
The Genetic Architecture of Maize Flowering Time
Buckler, E. S., Holland, J. B., Bradbury, P. J., Acharya, C. B., Brown, P. J., Browne, C., Ersoz, E., Flint-Garcia, S., Garcia, A., Glaubitz, J. C., et al. (2009) · Science · doi:10.1126/science.1174276 · Cited by 1,457
ZmCCT9 enhances maize adaptation to higher latitudes
Huang, C., Sun, H., Xu, D., Chen, Q., Liang, Y., Wang, X., Xu, G., Tian, J., Wang, C., Li, D., et al. (2018) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1718058115 · Cited by 292
Rice Root Genetic Architecture: Meta-analysis from a Drought QTL Database
Courtois, B., Ahmadi, N., Khowaja, F., Price, A. H., Rami, J.-F., Frouin, J., Hamelin, C., & Ruiz, M. (2009) · Rice · doi:10.1007/s12284-009-9028-9 · Cited by 284
Dell’Acqua, M., Gatti, D. M., Pea, G., Cattonaro, F., Coppens, F., Magris, G., Hlaing, A. L., Aung, H. H., Nelissen, H., Baute, J., et al. (2015) · Genome Biology · doi:10.1186/s13059-015-0716-z · Cited by 272
Genome-wide analysis of yield in Europe: allelic effects as functions of drought and heat scenarios
Millet, E., Welcker, C., Kruijer, W., Negro, S., Nicolas, S., Praud, S., Ranc, N., Presterl, T., Tuberosa, R., Bedo, Z., et al. (2016) · Plant Physiology · doi:10.1104/pp.16.00621 · Cited by 160
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Metadata
- Authors
- Chardon, F., Virlon, B., Moreau, L., Falque, M., Joets, J., Decousset, L., Murigneux, A., & Charcosset, A.
- Venue
- Genetics
- Publisher
- Oxford University Press (OUP)
- Published
- 2004-12-01
- Volume
- 168
- Issue
- 4
- Pages
- 2169-2185
- ISSN
- 0016-6731 (ISSN-L)
- 1943-2631
- OpenAlex
- W2165278024
- Cited by
- 393
- References
- 1
- FWCI
- 6.73
- Type
- journal article
- Language
- en
- Open access
- closed
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- CoChat. (2026). Citation check: Genetic Architecture of Flowering Time in Maize As Inferred From Quantitative Trait Loci Meta-analysis and Synteny Conservation With the Rice Genome. https://app.cochat.ai/papers/10.1534/genetics.104.032375
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- Chardon, F., Virlon, B., Moreau, L., Falque, M., Joets, J., Decousset, L., Murigneux, A., & Charcosset, A. (2004). Genetic Architecture of Flowering Time in Maize As Inferred From Quantitative Trait Loci Meta-analysis and Synteny Conservation With the Rice Genome. Genetics. https://doi.org/10.1534/genetics.104.032375
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