Root Cause Analysis in Microservice Using Neural Granger Causal Discovery
Open accessAbstract
In recent years, microservices have gained widespread adoption in IT operations due to their scalability, maintenance, and flexibility. However, it becomes challenging for site reliability engineers (SREs) to pinpoint the root cause due to the complex relationship in microservices when facing system malfunctions. Previous research employed structure learning methods (e.g., PC-algorithm) to establish causal relationships and derive root causes from causal graphs. Nevertheless, they ignored the temporal order of time series data and failed to leverage the rich information inherent in the temporal relationships. For instance, in cases where there is a sudden spike in CPU utilization, it can lead to an increase in latency for other microservices. However, in this scenario, the anomaly in CPU utilization occurs before the latency increases, rather than simultaneously. As a result, the PC-algorithm fails to capture such characteristics. To address these challenges, we propose RUN, a novel approach for root cause analysis using neural Granger causal discovery with contrastive learning. RUN enhances the backbone encoder by integrating contextual information from time series and leverages a time series forecasting model to conduct neural Granger causal discovery. In addition, RUN incorporates Pagerank with a personalization vector to efficiently recommend the top-k root causes. Extensive experiments conducted on the synthetic and real-world microservice-based datasets demonstrate that RUN noticeably outperforms the state-of-the-art root cause analysis methods. Moreover, we provide an analysis scenario for the sock-shop case to showcase the practicality and efficacy of RUN in microservice-based applications. Our code is publicly available at https://github.com/zmlin1998/RUN.
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Existing RCA studies typically evaluate their methods on only 1-2 systems with 2-3 fault types.
“For example, existing studies [8,10,13] typically evaluate their methods on only 1-2 systems with 2-3 fault types.”
From RCAEval: A Benchmark for Root Cause Analysis of Microservice Systems with Telemetry Data (2025) · cites this paper as [13]
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Cites
Adam: A Method for Stochastic Optimization
Kingma, D. P., & Ba, J. (2014) · arXiv · doi:10.48550/arxiv.1412.6980 · Cited by 98,946 · see citing works
AutoMAP: Diagnose Your Microservice-based Web Applications Automatically
Ma, M., Xu, J., Wang, Y., Chen, P., Zhang, Z., & Wang, P. (2020) · Proceedings of The Web Conference 2020 · doi:10.1145/3366423.3380111 · Cited by 129 · see citing works
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Research works printed but not linked: 18
- Chen, B.; Yu, L.; Luo, W.; Wu, C.; Li, M.; Tan, H.; Huang, J.; and Wan, Z. 2022. Hybrid tree model for root cause analysis of wireless network fault localization. Web Intell., 20(3): 213-223.
- Chen, X.; and He, K. 2021. Exploring Simple Siamese Rep- resentation Learning. In CVPR, 15750-15758.
- Cheng, Y.; Yang, R.; Xiao, T.; Li, Z.; Suo, J.; He, K.; and Dai, Q. 2023. CUTS: Neural Causal Discovery from Irreg- ular Time-Series Data. In ICLR. OpenReview.net.
- Fan, C.; Wang, Y.; Zhang, Y.; and Ouyang, W. 2023. Inter- pretable Multi-Scale Neural Network for Granger Causal- ity Discovery. In ICASSP 2023-2023 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP), 1-5. IEEE.
- Gao, T.; Yao, X.; and Chen, D. 2021. SimCSE: Simple Con- trastive Learning of Sentence Embeddings. In EMNLP (1), 6894-6910. Association for Computational Linguistics.
- Granger, C. W. 1969. Investigating causal relations by econometric models and cross-spectral methods. Economet- rica: journal of the Econometric Society, 424-438.
- Grill, J.; Strub, F.; Altché, F.; Tallec, C.; Richemond, P. H.; Buchatskaya, E.; Doersch, C.; Pires, B. Á.; Guo, Z.; Azar, M. G.; Piot, B.; Kavukcuoglu, K.; Munos, R.; and Valko, M. 2020. Bootstrap Your Own Latent -A New Approach to Self-Supervised Learning. In NeurIPS.
- Ikram, A.; Chakraborty, S.; Mitra, S.; Saini, S. K.; Bagchi, S.; and Kocaoglu, M. 2022. Root Cause Analysis of Failures in Microservices through Causal Discovery. In NeurIPS.
- Liu, D.; He, C.; Peng, X.; Lin, F.; Zhang, C.; Gong, S.; Li, Z.; Ou, J.; and Wu, Z. 2021. MicroHECL: High-Efficient Root Cause Localization in Large-Scale Microservice Sys- tems. In ICSE (SEIP), 338-347. IEEE.
- Mach. Learn. Knowl. Extr., 1(1): 312-340.
- Oliveira, E. E.; Miguéis, V. L.; and de Moura Borges, J. L. C. 2023. Automatic root cause analysis in manufacturing: an overview & conceptualization. J. Intell. Manuf., 34(5): 2061-2078.
- ACM. Soldani, J.; Forti, S.; and Brogi, A. 2022. Failure Root Cause Analysis for Microservices, Explained. In DAIS, vol- ume 13272 of Lecture Notes in Computer Science, 74-91. Springer.
- Tank, A.; Covert, I.; Foti, N. J.; Shojaie, A.; and Fox, E. B. 2022. Neural Granger Causality. IEEE Trans. Pattern Anal. Mach. Intell., 44(8): 4267-4279.
- Wang, D.; Chen, Z.; Ni, J.; Tong, L.; Wang, Z.; Fu, Y.; and Chen, H. 2023. Hierarchical Graph Neural Networks for Causal Discovery and Root Cause Localization. CoRR, abs/2302.01987. · arXiv
- Wang, H.; Wu, Z.; Jiang, H.; Huang, Y.; Wang, J.; Köprü, S.; and Xie, T. 2021. Groot: An Event-graph-based Approach for Root Cause Analysis in Industrial Settings. In ASE, 419- 429. IEEE.
- Yue, Z.; Wang, Y.; Duan, J.; Yang, T.; Huang, C.; Tong, Y.; and Xu, B. 2022. TS2Vec: Towards Universal Representa- tion of Time Series. In AAAI, 8980-8987. AAAI Press.
- Zeng, A.; Chen, M.; Zhang, L.; and Xu, Q. 2023. Are Trans- formers Effective for Time Series Forecasting? In AAAI, 11121-11128. AAAI Press.
- Zhang, C.; Peng, X.; Sha, C.; Zhang, K.; Fu, Z.; Wu, X.; Lin, Q.; and Zhang, D. 2022. DeepTraLog: Trace- Log Combined Microservice Anomaly Detection through Graph-based Deep Learning. In ICSE, 623-634. ACM.
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RCAEval: A Benchmark for Root Cause Analysis of Microservice Systems with Telemetry Data
Pham, L., Zhang, H., Ha, H., Salim, F., & Zhang, X. (2025) · Companion Proceedings of the ACM on Web Conference 2025 · doi:10.1145/3701716.3715290 · Cited by 33 · see citing works
Flow-of-action: SOP-enhanced LLM-based multi-agent system for root cause analysis
Pei, C., Wang, Z., Liu, F., Li, Z., Liu, Y., He, X., Kang, R., Zhang, T., Chen, J., Li, J., et al. (2025) · Companion Proceedings of the ACM on Web Conference 2025 · doi:10.1145/3701716.3715225 · Cited by 33 · see citing works
- Authors
- Lin, C.-M., Chang, C., Wang, W.-Y., Wang, K.-D., & Peng, W.-C.
- Affiliations
- National Yang Ming Chiao Tung University (TW)
- Venue
- Proceedings of the AAAI Conference on Artificial Intelligence
- Published
- 2024-03-24
- Volume
- 38
- Issue
- 1
- Pages
- 206-213
- ISSN
- 2159-5399 (ISSN-L)
- 2374-3468
- OpenAlex
- W4393158607
- Cited by
- 39
- References
- 2
- Citations by year
- 2026: 22 · 2025: 14 · 2024: 3
- FWCI
- 17.07
- Type
- conference paper
- Language
- en
- Open access
- diamond
- doi.org
- Locations
- Proceedings of the AAAI Conference on Artificial Intelligence (publishedVersion)
- arXiv (Cornell University) (submittedVersion, cc-by-sa)
- arXiv (Cornell University)
- Topics
- Physical Sciences › Computer Science › Computer Networks and Communications › Software System Performance and Reliability
- Physical Sciences › Computer Science › Information Systems › Software Engineering Research
- Physical Sciences › Computer Science › Information Systems › Cloud Computing and Resource Management
- Keywords
- root cause analysis, microservices, contrastive learning, temporal order, time series forecasting, IT operations
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