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TreeReview: A Dynamic Tree of Questions Framework for Deep and Efficient LLM-based Scientific Peer Review

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Chang, Yuan, Li, Ziyue, Zhang, Hengyuan, Kong, Yuanbo, Wu, Yanru, So, Hayden Kwok-Hay, Guo, Zhijiang, Zhu, Liya +1 more·2025·Proceedings of the 2025 Conference on Empirical Methods in Natural Language Processing

Abstract

Yuan Chang, Ziyue Li, Hengyuan Zhang, Yuanbo Kong, Yanru Wu, Hayden Kwok-Hay So, Zhijiang Guo, Liya Zhu, Ngai Wong. Proceedings of the 2025 Conference on Empirical Methods in Natural Language Processing. 2025.

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Crossref · 10.18653/v1/2025.emnlp-main.790

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  • The annotation is bidirectional: AI and human review items are subject to the same scrutiny rather than human reviews being treated as the implicit reference for AI.

    “The annotation is bidirectional, in that AI and human review items are subject to the same scrutiny rather than human reviews being treated as the implicit reference for AI [Chang et al., 2025, Garg et al., 2025, Idahl and Ahmadi, 2025, Bougie and Watanabe, 2025].”

    From On the limits and opportunities of AI reviewers: Reviewing the reviews of Nature-family papers with 45 expert scientists (2026) · cites this paper as Chang et al., 2025

    Section 4.3 treats human reviewer comments as the reference for evaluating AI-generated feedback: it merges them into a 'comprehensive ground truth.' Section 4.4 describes human evaluators comparing reviews generated by different methods, not subjecting human and AI review items to the same scrutiny. The paper therefore describes the opposite of the claimed bidirectional annotation. (LLM, conf=0.90)

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  • TreeReview models peer review as a hierarchical question-answering process, beginning with top-down decomposition into a tree of sub-questions.

    “TreeReview (Chang et al., 2025) models peer review as a hierarchical question-answering process.The process begins with a top-down decomposition stage, where a high-level review task is recursively broken down into a tree of more finegrained sub-questions.”
  • TreeReview evaluates individual feedback comments through embedding-based and LLM-based matching for coverage and specificity.

    “TreeReview evaluates individual feedback comments through embedding-based and LLM-based matching for coverage and specificity [Chang et al., 2025]”

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Research works printed but not linked: 13

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  2. Ziyue Li, Yuan Chang, and Xiaoqiu Le. 2024d. Simulat- ing expert discussions with multi-agent for enhanced scientific problem solving. In Proceedings of the Fourth Workshop on Scholarly Document Process- ing (SDP 2024), pages 243-256, Bangkok, Thailand. Association for Computational Linguistics.
  3. Chin-Yew Lin. 2004. ROUGE: A package for auto- matic evaluation of summaries. In Text Summariza- tion Branches Out, pages 74-81, Barcelona, Spain. Association for Computational Linguistics.
  4. Renze Lou, Hanzi Xu, Sijia Wang, Jiangshu Du, Ryo Kamoi, Xiaoxin Lu, Jian Xie, Yuxuan Sun, Yusen Zhang, Jihyun Janice Ahn, Hongchao Fang, Zhuoyang Zou, Wenchao Ma, Xi Li, Kai Zhang, Con- gying Xia, Lifu Huang, and Wenpeng Yin. 2024. AAAR-1.0: Assessing AI's potential to assist re- search. In 2nd AI4Research Workshop: Towards a Knowledge-grounded Scientific Research Lifecycle.
  5. Qusay H Mahmoud and 1 others. 2024. Evaluating the efficacy of large language models in automat- ing academic peer reviews. In 2024 International Conference on Machine Learning and Applications (ICMLA), pages 1208-1213. IEEE.
  6. Guanchao Wang, Pawin Taechoyotin, Tong Zeng, Bradley Sides, and Daniel Acuna. 2024a. MAMORX: Multi-agent multi-modal scien- tific review generation with external knowledge. In Neurips 2024 Workshop Foundation Models for Science: Progress, Opportunities, and Challenges.
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  10. PMLR.
  11. Denny Zhou, Nathanael Schärli, Le Hou, Jason Wei, Nathan Scales, Xuezhi Wang, Dale Schuurmans, Claire Cui, Olivier Bousquet, Quoc V Le, and Ed H. Chi. 2023. Least-to-most prompting enables com- plex reasoning in large language models. In The Eleventh International Conference on Learning Rep- resentations.
  12. You specialize in providing precise, evidence-based answers to review questions for submitted paper. You operate at the leaf-node level of a peer-review question tree. Your answers will directly support higher-level critique synthesis. TASK REQUIREMENTS:
  13. Provide Detailed Evidence: For each comment, include specific evidence from the given context (e.g., quotes, section references, or data points) to justify your point. INPUT: -Review Question: {QUESTION} -Relevant Context: {CONTEXT} OUTPUT FORMAT: A single string containing only the answer to the review question. Your final answer: Figure 14: Prompt for the Answer Synthesizer in answering leaf questions.

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Authors
Chang, Y., Li, Z., Zhang, H., Kong, Y., Wu, Y., So, H. K.-H., Guo, Z., Zhu, L., & Wong, N.
Affiliations
  • Chinese Academy of Sciences (CN)
  • University of Hong Kong (HK)
  • Tsinghua University (CN)
  • The Hong Kong University of Science and Technology (Guangzhou) (CN)
Venue
Proceedings of the 2025 Conference on Empirical Methods in Natural Language Processing
Published
2025
Pages
15662-15693
OpenAlex
W4416036292
Cited by
2
References
0
Citations by year
2026: 2
FWCI
1.91
Type
conference paper
Language
en
Open access
Licence
cc-by
Locations
Conference on Empirical Methods in Natural Language Processing (EMNLP) (publishedVersion, cc-by)
Funders
Chinese Academy of Sciences
Topics
  • Physical Sciences › Computer Science › Artificial Intelligence › Topic Modeling
  • Social Sciences › Arts and Humanities › History and Philosophy of Science › Academic Writing and Publishing
  • Physical Sciences › Computer Science › Information Systems › Expert finding and Q&A systems
Keywords
scientific peer review, large language models, question generation

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