The DOI matches its Crossref record; 1 of the 1 references it cites were found in a registry or an index.
Spinocerebellar ataxia 38: structure-function analysis shows ELOVL5 G230V is proteotoxic, conformationally altered and a mutational hotspot
Open accessPreprint — published as 10.1007/s00439-023-02572-y · Paper page
Abstract
Fatty acid elongase ELOVL5 is part of a protein family of multipass transmembrane proteins that reside in the endoplasmic reticulum where they regulate long-chain fatty acid elongation. A missense variant (c.689G > T p.Gly230Val) in ELOVL5 causes Spinocerebellar Ataxia subtype 38 (SCA38), a neurodegenerative disorder characterized by autosomal dominant inheritance, cerebellar Purkinje cell demise and adult-onset ataxia. Having previously showed aberrant accumulation of p.G230V in the Golgi complex, here we further investigated the pathogenic mechanisms triggered by p.G230V, integrating functional studies with bioinformatic analyses of protein sequence and structure. Biochemical analysis showed that p.G230V enzymatic activity was normal. In contrast, SCA38-derived fibroblasts showed reduced expression of ELOVL5, Golgi complex enlargement and increased proteasomal degradation with respect to controls. By heterologous overexpression, p.G230V was significantly more active than wild-type ELOVL5 in triggering the unfolded protein response and in decreasing viability in mouse cortical neurons. By homology modelling, we generated native and p.G230V protein structures whose superposition revealed a shift in Loop 6 in p.G230V that altered a highly conserved intramolecular disulfide bond. The conformation of this bond, connecting Loop 2 and Loop 6, appears to be elongase-specific. Alteration of this intramolecular interaction was also observed when comparing wild-type ELOVL4 and the p.W246G variant which causes SCA34. We demonstrate by sequence and structure analyses that ELOVL5 p.G230V and ELOVL4 p.W246G are position-equivalent missense variants. We conclude that SCA38 is a conformational disease and propose combined loss of function by mislocalization and gain of toxic function by ER/Golgi stress as early events in SCA38 pathogenesis.
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
Highly accurate protein structure prediction with AlphaFold
Jumper, J., Evans, R., Pritzel, A., Green, T., Figurnov, M., Ronneberger, O., Tunyasuvunakool, K., Bates, R., Žídek, A., Potapenko, A., et al. (2021) · Nature · doi:10.1038/s41586-021-03819-2 · Cited by 43,764
Flagged first, then by citations
Research works printed but not linked: 119
- Agbaga MP, Stiles MA, Brush RS, Sullivan MT, Machalinski A, Jones KL, Anderson RE, Sherry DM (2020) The Elovl4 Spinocerebellar Ataxia-34 Mutation 736T > G (p.W246G) Impairs Retinal Function in the Absence of Photoreceptor Degeneration. Mol Neurobiol 57:4735–4753. 10.1007/s12035-020-02052-8 · DOI
- Ashizawa T, Oz G, Paulson HL (2018) Spinocerebellar ataxias: prospects and challenges for therapy development. Nat Rev Neurol 14:590–605. 10.1038/s41582-018-0051-6 · DOI
- Atkinson R, Leung J, Bender J, Kirkcaldie M, Vickers J, King A (2021) TDP-43 mislocalization drives neurofilament changes in a novel model of TDP-43 proteinopathy. Dis Model Mech. 10.1242/dmm.047548 · DOI
- Balbo I, Montarolo F, Boda E, Tempia F, Hoxha E (2021) Elovl5 Expression in the Central Nervous System of the Adult Mouse. Front Neuroanat 15:669073. 10.3389/fnana.2021.669073 · DOI
- Balchin D, Hayer-Hartl M, Hartl FU (2016) In vivo aspects of protein folding and quality control. Science 353:aac4354. 10.1126/science.aac4354 · DOI
- Barnes MR, Gray IC (2003) Bioinformatics for Geneticists. Wiley · DOI
- Basso M, Berlin J, Xia L, Sleiman SF, Ko B, Haskew-Layton R, Kim E, Antonyak MA, Cerione RA, Iismaa SE, Willis D, Cho S, Ratan RR (2012) Transglutaminase inhibition protects against oxidative stress-induced neuronal death downstream of pathological ERK activation. J Neurosci 32:6561–6569. 10.1523/JNEUROSCI.3353-11.2012 · DOI
- Bazinet RP, Laye S (2014) Polyunsaturated fatty acids and their metabolites in brain function and disease. Nat Rev Neurosci 15:771–785. 10.1038/nrn3820 · DOI
- Bechtel TJ, Weerapana E (2017) From structure to redox: The diverse functional roles of disulfides and implications in disease. Proteomics 17. 10.1002/pmic.201600391 · DOI
- Bernstein PS, Tammur J, Singh N, Hutchinson A, Dixon M, Pappas CM, Zabriskie NA, Zhang K, Petrukhin K, Leppert M, Allikmets R (2001) Diverse macular dystrophy phenotype caused by a novel complex mutation in the ELOVL4 gene. Invest Ophthalmol Vis Sci 42:3331–3336
- Boot A, Oosting J, van Eendenburg JDH, Kuppen PJK, Morreau H, van Wezel T (2017) Methylation associated transcriptional repression of ELOVL5 in novel colorectal cancer cell lines. PLoS ONE 12:e0184900. 10.1371/journal.pone.0184900 · DOI
- Borroni B, Di Gregorio E, Orsi L, Vaula G, Costanzi C, Tempia F, Mitro N, Caruso D, Manes M, Pinessi L, Padovani A, Brusco A, Boccone L (2016) Clinical and neuroradiological features of spinocerebellar ataxia 38 (SCA38). Parkinsonism Relat Disord 28:80–86. 10.1016/j.parkreldis.2016.04.030 · DOI
- Brenna JT, Kothapalli KSD (2021) New understandings of the pathway of long-chain polyunsaturated fatty acid biosynthesis. Curr Opin Clin Nutr Metab Care. 10.1097/MCO.0000000000000810 · DOI
- Briant K, Johnson N, Swanton E (2017) Transmembrane domain quality control systems operate at the endoplasmic reticulum and Golgi apparatus. PLoS ONE 12:e0173924. 10.1371/journal.pone.0173924 · DOI
- Bushart DD, Murphy GG, Shakkottai VG (2016) Precision medicine in spinocerebellar ataxias: treatment based on common mechanisms of disease. Ann Transl Med 4:25. 10.3978/j.issn.2305-5839.2016.01.06 · DOI
- Cadieux-Dion M, Turcotte-Gauthier M, Noreau A, Martin C, Meloche C, Gravel M, Drouin CA, Rouleau GA, Nguyen DK, Cossette P (2014) Expanding the clinical phenotype associated with ELOVL4 mutation: study of a large French-Canadian family with autosomal dominant spinocerebellar ataxia and erythrokeratodermia. JAMA Neurol 71:470–475. 10.1001/jamaneurol.2013.6337 · DOI · Paper page
- Capriotti E, Fariselli P, Casadio R (2005) I-Mutant2.0: predicting stability changes upon mutation from the protein sequence or structure. Nucleic Acids Res 33:W306–W310. 10.1093/nar/gki375 · DOI
- Capriotti E, Fariselli P, Rossi I, Casadio R (2008) A three-state prediction of single point mutations on protein stability changes. BMC Bioinformatics 9 Suppl 2: S6. doi: 10.1186/1471-2105-9-S2-S6 · DOI
- Centenera MM, Scott JS, Machiels J, Nassar ZD, Miller DC, Zininos I, Dehairs J, Burvenich IJG, Zadra G, Chetta P, Bango C, Evergren E, Ryan NK, Gillis JL, Mah CY, Tieu T, Hanson AR, Carelli R, Bloch K, Panagopoulos V, Waelkens E, Derua R, Williams ED, Evdokioou A, Cifuentes-Rius A, Voelcker NH, Mills IG, Tilley WD, Scott AM, Loda M, Selth LA, Swinnen JV, Butler LM (2021) ELOVL5 is a critical and targetable fatty acid elongase in prostate cancer. Cancer Res. 10.1158/0008-5472.CAN-20-2511 · DOI
- Ciechanover A, Kwon YT (2015) Degradation of misfolded proteins in neurodegenerative diseases: therapeutic targets and strategies. Exp Mol Med 47:e147. 10.1038/emm.2014.117 · DOI · Paper page
- Conn PM, Ulloa-Aguirre A (2011) Pharmacological chaperones for misfolded gonadotropin-releasing hormone receptors. Adv Pharmacol 62: 109 – 41. doi: 10.1016/B978-0-12-385952-5.00008-7 · DOI
- Cosson P, Perrin J, Bonifacino JS (2013) Anchors aweigh: protein localization and transport mediated by transmembrane domains. Trends Cell Biol 23:511–517. 10.1016/j.tcb.2013.05.005 · DOI
- Creedican S, Talty A, Fitzgerald SP, Samali A, Richardson C, Gorman AM, Martin K (2019) Application of a New Multiplexed Array for Rapid, Sensitive, Simultaneous and Quantitative Assessment of Spliced and Unspliced XBP1. Biol Proced Online 21:22. 10.1186/s12575-019-0111-3 · DOI
- Deak F, Anderson RE, Fessler JL, Sherry DM (2019) Novel Cellular Functions of Very Long Chain-Fatty Acids: Insight From ELOVL4 Mutations. Front Cell Neurosci 13:428. 10.3389/fncel.2019.00428 · DOI
- Denic V, Weissman JS (2007) A molecular caliper mechanism for determining very long-chain fatty acid length. Cell 130:663–677. 10.1016/j.cell.2007.06.031 · DOI
- DePristo MA, Weinreich DM, Hartl DL (2005) Missense meanderings in sequence space: a biophysical view of protein evolution. Nat Rev Genet 6:678–687. 10.1038/nrg1672 · DOI
- Di Gregorio E, Borroni B, Giorgio E, Lacerenza D, Ferrero M, Lo Buono N, Ragusa N, Mancini C, Gaussen M, Calcia A, Mitro N, Hoxha E, Mura I, Coviello DA, Moon YA, Tesson C, Vaula G, Couarch P, Orsi L, Duregon E, Papotti MG, Deleuze JF, Imbert J, Costanzi C, Padovani A, Giunti P, Maillet-Vioud M, Durr A, Brice A, Tempia F, Funaro A, Boccone L, Caruso D, Stevanin G, Brusco A (2014) ELOVL5 mutations cause spinocerebellar ataxia 38. Am J Hum Genet 95:209–217. 10.1016/j.ajhg.2014.07.001 · DOI
- Dombkowski AA, Sultana KZ, Craig DB (2014) Protein disulfide engineering. FEBS Lett 588: 206 – 12. doi: 10.1016/j.febslet.2013.11.024 · DOI
- Gasteiger E, Gattiker A, Hoogland C, Ivanyi I, Appel RD, Bairoch A (2003) ExPASy: The proteomics server for in-depth protein knowledge and analysis. Nucleic Acids Res 31:3784–3788. 10.1093/nar/gkg563 · DOI
- Gazulla J, Orduna-Hospital E, Benavente I, Rodriguez-Valle A, Osorio-Caicedo P, Alvarez-de Andres S, Garcia-Gonzalez E, Fraile-Rodrigo J, Fernandez-Tirado FJ, Berciano J (2020) Contributions to the study of spinocerebellar ataxia type 38 (SCA38). J Neurol 267:2288–2295. 10.1007/s00415-020-09840-1 · DOI
- Giroux JM, Barbeau A (1972) Erythrokeratodermia with ataxia. Arch Dermatol 106:183–188 · DOI
- Gregory MK, Cleland LG, James MJ (2013) Molecular basis for differential elongation of omega-3 docosapentaenoic acid by the rat Elovl5 and Elovl2. J Lipid Res 54:2851–2857. 10.1194/jlr.M041368 · DOI · Paper page
- Gyening YK, Chauhan NK, Tytanic M, Ea V, Brush RS, Agbaga MP (2023) ELOVL4 Mutations That Cause Spinocerebellar Ataxia-34 Differentially Alter Very Long Chain Fatty Acid Biosynthesis. J Lipid Res 64:100317. 10.1016/j.jlr.2022.100317 · DOI
- Hachem M, Belkouch M, Lo Van A, Picq M, Bernoud-Hubac N, Lagarde M (2020) Brain targeting with docosahexaenoic acid as a prospective therapy for neurodegenerative diseases and its passage across blood brain barrier. Biochimie 170:203–211. 10.1016/j.biochi.2020.01.013 · DOI
- Hartl FU (2017) Protein Misfolding Diseases. Annu Rev Biochem 86:21–26. 10.1146/annurev-biochem-061516-044518 · DOI
- Hayashi YY, Kono M, Arai N, Fujiwara H, Ichi Y, I (2020) Phosphorylation of Elovl5 changes its substrate preference to synthesize Mead acid in response to essential fatty acid deficiency. BioArchive. 10.1101/2020.01.31.929224 · DOI
- Hoxha E, Gabriele RMC, Balbo I, Ravera F, Masante L, Zambelli V, Albergo C, Mitro N, Caruso D, Di Gregorio E, Brusco A, Borroni B, Tempia F (2017) Motor Deficits and Cerebellar Atrophy in Elovl5 Knock Out Mice. Front Cell Neurosci 11:343. 10.3389/fncel.2017.00343 · DOI
- Huang M, Verbeek DS (2019) Why do so many genetic insults lead to Purkinje Cell degeneration and spinocerebellar ataxia? Neurosci Lett 688:49–57. 10.1016/j.neulet.2018.02.004 · DOI
- Hwang JY, Lee HJ, Go MJ, Jang HB, Choi NH, Bae JB, Castillo-Fernandez JE, Bell JT, Spector TD, Lee HJ, Kim BJ (2018) Genome-wide methylation analysis identifies ELOVL5 as an epigenetic biomarker for the risk of type 2 diabetes mellitus. Sci Rep 8:14862. 10.1038/s41598-018-33238-9 · DOI
- Iqbal S, Perez-Palma E, Jespersen JB, May P, Hoksza D, Heyne HO, Ahmed SS, Rifat ZT, Rahman MS, Lage K, Palotie A, Cottrell JR, Wagner FF, Daly MJ, Campbell AJ, Lal D (2020) Comprehensive characterization of amino acid positions in protein structures reveals molecular effect of missense variants. Proc Natl Acad Sci U S A 117:28201–28211. 10.1073/pnas.2002660117 · DOI
- Jacquemyn J, Cascalho A, Goodchild RE (2017) The ins and outs of endoplasmic reticulum-controlled lipid biosynthesis. EMBO Rep 18:1905–1921. 10.15252/embr.201643426 · DOI
- Jakobsson A, Westerberg R, Jacobsson A (2006) Fatty acid elongases in mammals: their regulation and roles in metabolism. Prog Lipid Res 45:237–249. 10.1016/j.plipres.2006.01.004 · DOI · Paper page
- Jump DB (2009) Mammalian fatty acid elongases. Methods Mol Biol 579: 375 – 89. doi: 10.1007/978-1-60761-322-0_19 · DOI · Paper page
- Karczewski KJ, Francioli LC, Tiao G, Cummings BB, Alfoldi J, Wang Q, Collins RL, Laricchia KM, Ganna A, Birnbaum DP, Gauthier LD, Brand H, Solomonson M, Watts NA, Rhodes D, Singer-Berk M, England EM, Seaby EG, Kosmicki JA, Walters RK, Tashman K, Farjoun Y, Banks E, Poterba T, Wang A, Seed C, Whiffin N, Chong JX, Samocha KE, Pierce-Hoffman E, Zappala Z, O'Donnell-Luria AH, Minikel EV, Weisburd B, Lek M, Ware JS, Vittal C, Armean IM, Bergelson L, Cibulskis K, Connolly KM, Covarrubias M, Donnelly S, Ferriera S, Gabriel S, Gentry J, Gupta N, Jeandet T, Kaplan D, Llanwarne C, Munshi R, Novod S, Petrillo N, Roazen D, Ruano-Rubio V, Saltzman A, Schleicher M, Soto J, Tibbetts K, Tolonen C, Wade G, Talkowski ME, Database GA, Neale C, Daly BM, MacArthur MJ DG (2020) The mutational constraint spectrum quantified from variation in 141,456 humans. Nature 581:434–443. 10.1038/s41586-020-2308-7 · DOI · Paper page
- Katoh K, Rozewicki J, Yamada KD (2019) MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization. Brief Bioinform 20:1160–1166. 10.1093/bib/bbx108 · DOI · Paper page
- Kelley LA, Mezulis S, Yates CM, Wass MN, Sternberg MJ (2015) The Phyre2 web portal for protein modeling, prediction and analysis. Nat Protoc 10:845–858. 10.1038/nprot.2015.053 · DOI · Paper page
- Kerdiles OL, Calon S, F (2017) Omega-3 polyunsaturated fatty acids and brain health: Preclinical evidence for the prevention of neurodegenerative diseases. Trends Food Sci Technol 69:203–213. 10.1016/j.tifs.2017.09.003 · DOI
- Kihara A (2012) Very long-chain fatty acids: elongation, physiology and related disorders. J Biochem 152:387–395. 10.1093/jb/mvs105 · DOI
- Klockgether T, Mariotti C, Paulson HL (2019) Spinocerebellar ataxia. Nat Rev Dis Primers 5:24. 10.1038/s41572-019-0074-3 · DOI
- Kokubun H, Jin H, Aoe T (2019) Pathogenic Effects of Impaired Retrieval between the Endoplasmic Reticulum and Golgi Complex. Int J Mol Sci 20. 10.3390/ijms20225614 · DOI
- Kopanos C, Tsiolkas V, Kouris A, Chapple CE, Albarca Aguilera M, Meyer R, Massouras A (2019) VarSome: the human genomic variant search engine. Bioinformatics 35:1978–1980. 10.1093/bioinformatics/bty897 · DOI
- Kovacs GG (2019) Molecular pathology of neurodegenerative diseases: principles and practice. J Clin Pathol 72:725–735. 10.1136/jclinpath-2019-205952 · DOI
- Laimer J, Hofer H, Fritz M, Wegenkittl S, Lackner P (2015) MAESTRO–multi agent stability prediction upon point mutations. BMC Bioinformatics 16:116. 10.1186/s12859-015-0548-6 · DOI
- Lal D, May P, Perez-Palma E, Samocha KE, Kosmicki JA, Robinson EB, Moller RS, Krause R, Nurnberg P, Weckhuysen S, De Jonghe P, Guerrini R, Niestroj LM, Du J, Marini C, Euro E-RESC, Ware JS, Kurki M, Gormley P, Tang S, Wu S, Biskup S, Poduri A, Neubauer BA, Koeleman BPC, Helbig KL, Weber YG, Helbig I, Majithia AR, Palotie A, Daly MJ (2020) Gene family information facilitates variant interpretation and identification of disease-associated genes in neurodevelopmental disorders. Genome Med 12:28. 10.1186/s13073-020-00725-6 · DOI
- Lee JY, Nam M, Son HY, Hyun K, Jang SY, Kim JW, Kim MW, Jung Y, Jang E, Yoon SJ, Kim J, Kim J, Seo J, Min JK, Oh KJ, Han BS, Kim WK, Bae KH, Song J, Kim J, Huh YM, Hwang GS, Lee EW, Lee SC (2020) Polyunsaturated fatty acid biosynthesis pathway determines ferroptosis sensitivity in gastric cancer. Proc Natl Acad Sci U S A 117:32433–32442. 10.1073/pnas.2006828117 · DOI
- Li G, Panday SK, Alexov E (2021) SAAFEC-SEQ: A Sequence-Based Method for Predicting the Effect of Single Point Mutations on Protein Thermodynamic Stability. Int J Mol Sci 22. 10.3390/ijms22020606 · DOI
- Li W, Sandhoff R, Kono M, Zerfas P, Hoffmann V, Ding BC, Proia RL, Deng CX (2007) Depletion of ceramides with very long chain fatty acids causes defective skin permeability barrier function, and neonatal lethality in ELOVL4 deficient mice. Int J Biol Sci 3:120–128. 10.7150/ijbs.3.120 · DOI
- Liu C, Mei M, Li Q, Roboti P, Pang Q, Ying Z, Gao F, Lowe M, Bao S (2017) Loss of the golgin GM130 causes Golgi disruption, Purkinje neuron loss, and ataxia in mice. Proc Natl Acad Sci U S A 114:346–351. 10.1073/pnas.1608576114 · DOI
- Liu J, Huang Y, Li T, Jiang Z, Zeng L, Hu Z (2021) The role of the Golgi apparatus in disease (Review). Int J Mol Med 47. 10.3892/ijmm.2021.4871 · DOI
- Logan S, Agbaga MP, Chan MD, Brush RS, Anderson RE (2014) Endoplasmic reticulum microenvironment and conserved histidines govern ELOVL4 fatty acid elongase activity. J Lipid Res 55:698–708. 10.1194/jlr.M045443 · DOI
- Lowe SL, Peter F, Subramaniam VN, Wong SH, Hong W (1997) A SNARE involved in protein transport through the Golgi apparatus. Nature 389:881–884. 10.1038/39923 · DOI
- Luck K, Kim DK, Lambourne L, Spirohn K, Begg BE, Bian W, Brignall R, Cafarelli T, Campos-Laborie FJ, Charloteaux B, Choi D, Cote AG, Daley M, Deimling S, Desbuleux A, Dricot A, Gebbia M, Hardy MF, Kishore N, Knapp JJ, Kovacs IA, Lemmens I, Mee MW, Mellor JC, Pollis C, Pons C, Richardson AD, Schlabach S, Teeking B, Yadav A, Babor M, Balcha D, Basha O, Bowman-Colin C, Chin SF, Choi SG, Colabella C, Coppin G, D'Amata C, De Ridder D, De Rouck S, Duran-Frigola M, Ennajdaoui H, Goebels F, Goehring L, Gopal A, Haddad G, Hatchi E, Helmy M, Jacob Y, Kassa Y, Landini S, Li R, van Lieshout N, MacWilliams A, Markey D, Paulson JN, Rangarajan S, Rasla J, Rayhan A, Rolland T, San-Miguel A, Shen Y, Sheykhkarimli D, Sheynkman GM, Simonovsky E, Tasan M, Tejeda A, Tropepe V, Twizere JC, Wang Y, Weatheritt RJ, Weile J, Xia Y, Yang X, Yeger-Lotem E, Zhong Q, Aloy P, Bader GD, De Las Rivas J, Gaudet S, Hao T, Rak J, Tavernier J, Hill DE, Vidal M, Roth FP, Calderwood MA (2020) A reference map of the human binary protein interactome. Nature 580:402–408. 10.1038/s41586-020-2188-x · DOI · Paper page
- Lukiw WJ, Bazan NG (2008) Docosahexaenoic acid and the aging brain. J Nutr 138:2510–2514. 10.3945/jn.108.096016 · DOI
- Machamer CE (2015) The Golgi complex in stress and death. Front Neurosci 9:421. 10.3389/fnins.2015.00421 · DOI
- Mallucci GR, Klenerman D, Rubinsztein DC (2020) Developing Therapies for Neurodegenerative Disorders: Insights from Protein Aggregation and Cellular Stress Responses. Annu Rev Cell Dev Biol 36:165–189. 10.1146/annurev-cellbio-040320-120625 · DOI · Paper page
- Manes M, Alberici A, Di Gregorio E, Boccone L, Premi E, Mitro N, Pasolini MP, Pani C, Paghera B, Orsi L, Costanzi C, Ferrero M, Tempia F, Caruso D, Padovani A, Brusco A, Borroni B (2019) Long-term efficacy of docosahexaenoic acid (DHA) for Spinocerebellar Ataxia 38 (SCA38) treatment: An open label extension study. Parkinsonism Relat Disord 63:191–194. 10.1016/j.parkreldis.2019.02.040 · DOI
- Manes M, Alberici A, Di Gregorio E, Boccone L, Premi E, Mitro N, Pasolini MP, Pani C, Paghera B, Perani D, Orsi L, Costanzi C, Ferrero M, Zoppo A, Tempia F, Caruso D, Grassi M, Padovani A, Brusco A, Borroni B (2017) Docosahexaenoic acid is a beneficial replacement treatment for spinocerebellar ataxia 38. Ann Neurol 82:615–621. 10.1002/ana.25059 · DOI
- Matias Rodrigues JF, Wagner A (2009) Evolutionary plasticity and innovations in complex metabolic reaction networks. PLoS Comput Biol 5:e1000613. 10.1371/journal.pcbi.1000613 · DOI
- Matsusaki M, Kanemura S, Kinoshita M, Lee YH, Inaba K, Okumura M (2020) The Protein Disulfide Isomerase Family: from proteostasis to pathogenesis. Biochim Biophys Acta Gen Subj 1864:129338. 10.1016/j.bbagen.2019.04.003 · DOI
- Matus S, Valenzuela V, Medinas DB, Hetz C (2013) ER Dysfunction and Protein Folding Stress in ALS. Int J Cell Biol 2013: 674751. doi: 10.1155/2013/674751 · DOI
- Maugeri A, Meire F, Hoyng CB, Vink C, Van Regemorter N, Karan G, Yang Z, Cremers FP, Zhang K (2004) A novel mutation in the ELOVL4 gene causes autosomal dominant Stargardt-like macular dystrophy. Invest Ophthalmol Vis Sci 45:4263–4267. 10.1167/iovs.04-0078 · DOI
- Monroig O, Lopes-Marques M, Navarro JC, Hontoria F, Ruivo R, Santos MM, Venkatesh B, Tocher DR, Castro LF (2016) Evolutionary functional elaboration of the Elovl2/5 gene family in chordates. Sci Rep 6:20510. 10.1038/srep20510 · DOI
- Moon YA, Hammer RE, Horton JD (2009) Deletion of ELOVL5 leads to fatty liver through activation of SREBP-1c in mice. J Lipid Res 50:412–423. 10.1194/jlr.M800383-JLR200 · DOI
- Moon YA, Shah NA, Mohapatra S, Warrington JA, Horton JD (2001) Identification of a mammalian long chain fatty acyl elongase regulated by sterol regulatory element-binding proteins. J Biol Chem 276:45358–45366. 10.1074/jbc.M108413200 · DOI
- Moore KA, Hollien J (2012) The unfolded protein response in secretory cell function. Annu Rev Genet 46:165–183. 10.1146/annurev-genet-110711-155644 · DOI
- Nie L, Pascoa TC, Pike ACW, Bushell SR, Quigley A, Ruda GF, Chu A, Cole V, Speedman D, Moreira T, Shrestha L, Mukhopadhyay SMM, Burgess-Brown NA, Love JD, Brennan PE, Carpenter EP (2021) The structural basis of fatty acid elongation by the ELOVL elongases. Nat Struct Mol Biol 28:512–520. 10.1038/s41594-021-00605-6 · DOI
- Ohno Y, Suto S, Yamanaka M, Mizutani Y, Mitsutake S, Igarashi Y, Sassa T, Kihara A (2010) ELOVL1 production of C24 acyl-CoAs is linked to C24 sphingolipid synthesis. Proc Natl Acad Sci U S A 107:18439–18444. 10.1073/pnas.1005572107 · DOI · Paper page
- Oka OB, Bulleid NJ (2013) Forming disulfides in the endoplasmic reticulum. Biochim Biophys Acta 1833:2425–2429. 10.1016/j.bbamcr.2013.02.007 · DOI
- Okuda A, Naganuma T, Ohno Y, Abe K, Yamagata M, Igarashi Y, Kihara A (2010) Hetero-oligomeric interactions of an ELOVL4 mutant protein: implications in the molecular mechanism of Stargardt-3 macular dystrophy. Mol Vis 16:2438–2445
- Omasits U, Ahrens CH, Muller S, Wollscheid B (2014) Protter: interactive protein feature visualization and integration with experimental proteomic data. Bioinformatics 30:884–886. 10.1093/bioinformatics/btt607 · DOI
- Ori-McKenney KM, Jan LY, Jan YN (2012) Golgi outposts shape dendrite morphology by functioning as sites of acentrosomal microtubule nucleation in neurons. Neuron 76:921–930. 10.1016/j.neuron.2012.10.008 · DOI
- Ozaki K, Doi H, Mitsui J, Sato N, Iikuni Y, Majima T, Yamane K, Irioka T, Ishiura H, Doi K, Morishita S, Higashi M, Sekiguchi T, Koyama K, Ueda N, Miura Y, Miyatake S, Matsumoto N, Yokota T, Tanaka F, Tsuji S, Mizusawa H, Ishikawa K (2015) A Novel Mutation in ELOVL4 Leading to Spinocerebellar Ataxia (SCA) With the Hot Cross Bun Sign but Lacking Erythrokeratodermia: A Broadened Spectrum of SCA34. JAMA Neurol 72:797–805. 10.1001/jamaneurol.2015.0610 · DOI · Paper page
- Patthy L (2008) Protein Evolution, Second Edition edn. Blackwell Publishing
- Peden AH, Ironside JW (2012) Molecular pathology in neurodegenerative diseases. Curr Drug Targets 13:1548–1559. 10.2174/138945012803530134 · DOI
- Pettersen EF, Goddard TD, Huang CC, Couch GS, Greenblatt DM, Meng EC, Ferrin TE (2004) UCSF Chimera–a visualization system for exploratory research and analysis. J Comput Chem 25:1605–1612. 10.1002/jcc.20084 · DOI
- Pfenninger KH (2009) Plasma membrane expansion: a neuron's Herculean task. Nat Rev Neurosci 10:251–261. 10.1038/nrn2593 · DOI
- Praschberger R, Lowe SA, Malintan NT, Giachello CNG, Patel N, Houlden H, Kullmann DM, Baines RA, Usowicz MM, Krishnakumar SS, Hodge JJL, Rothman JE, Jepson JEC (2017) Mutations in Membrin/GOSR2 Reveal Stringent Secretory Pathway Demands of Dendritic Growth and Synaptic Integrity. Cell Rep 21:97–109. 10.1016/j.celrep.2017.09.004 · DOI
- Pulvirenti T, Giannotta M, Capestrano M, Capitani M, Pisanu A, Polishchuk RS, San Pietro E, Beznoussenko GV, Mironov AA, Turacchio G, Hsu VW, Sallese M, Luini A (2008) A traffic-activated Golgi-based signalling circuit coordinates the secretory pathway. Nat Cell Biol 10:912–922. 10.1038/ncb1751 · DOI
- Ricca I, Tessa A, Trovato R, Bacci GM, Santorelli FM (2020) Docosahexaenoic acid in ARSACS: observations in two patients. BMC Neurol 20:215. 10.1186/s12883-020-01803-3 · DOI
- Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL, Committee ALQA (2015) Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology. Genet Med 17:405–424. 10.1038/gim.2015.30 · DOI · Paper page
- Ruggiero C, Cancino J, Giannotta M, Sallese M (2014) Signaling initiated by the secretory compartment. Methods Enzymol 534: 133 – 54. doi: 10.1016/B978-0-12-397926-1.00008-1 · DOI
- Savojardo C, Fariselli P, Martelli PL, Casadio R (2016) INPS-MD: a web server to predict stability of protein variants from sequence and structure. Bioinformatics 32:2542–2544. 10.1093/bioinformatics/btw192 · DOI · Paper page
- Scheper W, Hoozemans JJ (2015) The unfolded protein response in neurodegenerative diseases: a neuropathological perspective. Acta Neuropathol 130:315–331. 10.1007/s00401-015-1462-8 · DOI
- Schmidt O, Weyer Y, Baumann V, Widerin MA, Eising S, Angelova M, Schleiffer A, Kremser L, Lindner H, Peter M, Frohlich F, Teis D (2019) Endosome and Golgi-associated degradation (EGAD) of membrane proteins regulates sphingolipid metabolism. EMBO J 38:e101433. 10.15252/embj.2018101433 · DOI
- Schneider CA, Rasband WS, Eliceiri KW (2012) NIH Image to ImageJ: 25 years of image analysis. Nat Methods 9:671–675. 10.1038/nmeth.2089 · DOI · Paper page
- Schroder M, Kaufman RJ (2005) The mammalian unfolded protein response. Annu Rev Biochem 74: 739 – 89. doi: 10.1146/annurev.biochem.73.011303.074134 · DOI
- Sherry DM, Hopiavuori BR, Stiles MA, Rahman NS, Ozan KG, Deak F, Agbaga MP, Anderson RE (2017) Distribution of ELOVL4 in the Developing and Adult Mouse Brain. Front Neuroanat 11:38. 10.3389/fnana.2017.00038 · DOI · Paper page
- Shikama A, Shinozaki H, Takeuchi Y, Matsuzaka T, Aita Y, Murayama T, Sawada Y, Piao X, Toya N, Oya Y, Takarada A, Masuda Y, Nishi M, Kubota M, Izumida Y, Nakagawa Y, Iwasaki H, Kobayashi K, Yatoh S, Suzuki H, Yagyu H, Kawakami Y, Yamada N, Shimano H, Yahagi N (2015) Identification of human ELOVL5 enhancer regions controlled by SREBP. Biochem Biophys Res Commun 465:857–863. 10.1016/j.bbrc.2015.08.101 · DOI
- Soto C, Pritzkow S (2018) Protein misfolding, aggregation, and conformational strains in neurodegenerative diseases. Nat Neurosci 21:1332–1340. 10.1038/s41593-018-0235-9 · DOI · Paper page
- Suk TR, Rousseaux MWC (2020) The role of TDP-43 mislocalization in amyotrophic lateral sclerosis. Mol Neurodegener 15:45. 10.1186/s13024-020-00397-1 · DOI
- Sun Z, Brodsky JL (2019) Protein quality control in the secretory pathway. J Cell Biol 218:3171–3187. 10.1083/jcb.201906047 · DOI
- Tabas I, Ron D (2011) Integrating the mechanisms of apoptosis induced by endoplasmic reticulum stress. Nat Cell Biol 13:184–190. 10.1038/ncb0311-184 · DOI
- Tao YX, Conn PM (2018) Pharmacoperones as Novel Therapeutics for Diverse Protein Conformational Diseases. Physiol Rev 98:697–725. 10.1152/physrev.00029.2016 · DOI
- Tripathy D, Vignoli B, Ramesh N, Polanco MJ, Coutelier M, Stephen CD, Canossa M, Monin ML, Aeschlimann P, Turberville S, Aeschlimann D, Schmahmann JD, Hadjivassiliou M, Durr A, Pandey UB, Pennuto M, Basso M (2017) Mutations in TGM6 induce the unfolded protein response in SCA35. Hum Mol Genet 26:3749–3762. 10.1093/hmg/ddx259 · DOI
- Tripathy S, Lytle KA, Stevens RD, Bain JR, Newgard CB, Greenberg AS, Huang LS, Jump DB (2014) Fatty acid elongase-5 (Elovl5) regulates hepatic triglyceride catabolism in obese C57BL/6J mice. J Lipid Res 55:1448–1464. 10.1194/jlr.M050062 · DOI
- Veitia RA (2007) Exploring the molecular etiology of dominant-negative mutations. Plant Cell 19:3843–3851. 10.1105/tpc.107.055053 · DOI
- Veitia RA, Caburet S, Birchler JA (2018) Mechanisms of Mendelian dominance. Clin Genet 93:419–428. 10.1111/cge.13107 · DOI
- Vihinen M (2021) Functional effects of protein variants. Biochimie 180:104–120. 10.1016/j.biochi.2020.10.009 · DOI
- Wallis JG, Watts JL, Browse J (2002) Polyunsaturated fatty acid synthesis: what will they think of next? Trends Biochem Sci 27:467. 10.1016/s0968-0004(02)02168-0 · DOI · Paper page
- Walter P, Ron D (2011) The unfolded protein response: from stress pathway to homeostatic regulation. Science 334:1081–1086. 10.1126/science.1209038 · DOI
- Waterhouse A, Bertoni M, Bienert S, Studer G, Tauriello G, Gumienny R, Heer FT, de Beer TAP, Rempfer C, Bordoli L, Lepore R, Schwede T (2018) SWISS-MODEL: homology modelling of protein structures and complexes. Nucleic Acids Res 46:W296–W303. 10.1093/nar/gky427 · DOI
- Wiedemann C, Kumar A, Lang A, Ohlenschlager O (2020) Cysteines and Disulfide Bonds as Structure-Forming Units: Insights From Different Domains of Life and the Potential for Characterization by NMR. Front Chem 8:280. 10.3389/fchem.2020.00280 · DOI
- Wilkie AO (1994) The molecular basis of genetic dominance. J Med Genet 31:89–98. 10.1136/jmg.31.2.89 · DOI
- Yang G, Miton CM, Tokuriki N (2020) A mechanistic view of enzyme evolution. Protein Sci 29:1724–1747. 10.1002/pro.3901 · DOI
- Yang H, Hu HY (2016) Sequestration of cellular interacting partners by protein aggregates: implication in a loss-of-function pathology. FEBS J 283:3705–3717. 10.1111/febs.13722 · DOI
- Yang J, Yan R, Roy A, Xu D, Poisson J, Zhang Y (2015) The I-TASSER Suite: protein structure and function prediction. Nat Methods 12:7–8. 10.1038/nmeth.3213 · DOI · Paper page
- Yang M, Luo S, Wang X, Li C, Yang J, Zhu X, Xiao L, Sun L (2021) ER-Phagy: A New Regulator of ER Homeostasis. Front Cell Dev Biol 9:684526. 10.3389/fcell.2021.684526 · DOI
- Yue P, Li Z, Moult J (2005) Loss of protein structure stability as a major causative factor in monogenic disease. J Mol Biol 353:459–473. 10.1016/j.jmb.2005.08.020 · DOI
- Zhang K, Kniazeva M, Han M, Li W, Yu Z, Yang Z, Li Y, Metzker ML, Allikmets R, Zack DJ, Kakuk LE, Lagali PS, Wong PW, MacDonald IM, Sieving PA, Figueroa DJ, Austin CP, Gould RJ, Ayyagari R, Petrukhin K (2001) A 5-bp deletion in ELOVL4 is associated with two related forms of autosomal dominant macular dystrophy. Nat Genet 27:89–93. 10.1038/83817 · DOI
Metadata
- Authors
- Ferrero, E., Gregorio, E. D., Ferrero, M., Ortolan, E., Moon, Y.-A., Campli, A. D., Pavinato, L., Mancini, C., Tripathy, D., Manes, M., Hoxha, E., Costanzi, C., Pozzi, E., Sebastiano, M. R., Mitro, N., Tempia, F., Caruso, D., Borroni, B., Basso, M., Sallese, M., & Brusco, A.
- Affiliations
- University of Turin (IT)
- Azienda Ospedaliera Citta' della Salute e della Scienza di Torino (IT)
- Istituto Zooprofilattico Sperimentale del Piemonte Liguria e Valle d'Aosta
- Inha University (KR)
- University of Chieti-Pescara (IT)
- Bambino Gesù Children's Hospital (IT)
- University of Trento (IT)
- University of Brescia (IT)
- Neuroscience Institute Cavalieri Ottolenghi (IT)
- Istituti Ospitalieri di Cremona (IT)
- University of Milan (IT)
- Corresponding author
- Brusco, Alfredo
- ORCID
- Venue
- Human Genetics
- Published
- 2023-02-28
- Volume
- 142
- Issue
- 8
- Pages
- 1055-1076
- ISSN
- 0018-7348 (ISSN-L)
- PMC
- PMC10449689
- OpenAlex
- W4377010964
- Cited by
- 9
- References
- 1
- Citations by year
- 2026: 1 · 2025: 5 · 2024: 1 · 2023: 2
- FWCI
- 1.09
- Type
- journal article
- Language
- en
- Open access
- hybrid
- doi.org
- Locations
- Human Genetics (publishedVersion, cc-by)
- Research Square (acceptedVersion, cc-by)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- Archivio Istituzionale della Ricerca (Universita Degli Studi Di Milano) (submittedVersion, other-oa)
- Iris (University of Trento) (submittedVersion, cc-by)
- Institutional Research Information System University of Turin (University of Turin) (submittedVersion, other-oa)
- Funders
- Dipartimento di Scienze Mediche, Università degli Studi di Torino
- Fondazione Telethon (GGP12220, GGP14225)
- National Research Foundation of Korea (2021R1A2C1012480)
- Ministry of Education, Science and Technology (2021R1A2C1012480)
- Università degli Studi di Torino
- Ministero dell'Università e della Ricerca (20203P8C3X)
- Ministerio de Universidades
- Topics
- Life Sciences › Neuroscience › Cellular and Molecular Neuroscience › Genetic Neurodegenerative Diseases
- Life Sciences › Neuroscience › Cellular and Molecular Neuroscience › Hereditary Neurological Disorders
- Health Sciences › Medicine › Genetics (clinical) › Lysosomal Storage Disorders Research
- Keywords
- ELOVL5, ELOVL4, missense mutations, proteotoxicity, conformational diseases, Golgi apparatus, unfolded protein response, endoplasmic reticulum stress, Purkinje cell degeneration, neurodegeneration, protein mislocalization
- MeSH terms
- Fatty Acid Elongases, Amino Acid Sequence, Animals, Ataxia, Mutation, Spinocerebellar Ataxias, Mice
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review