Discriminating ramos and jurkat cells with image textures from diffraction imaging flow cytometry based on a support vector machine
Abstract
Background: The flow cytometry (FCM) has been widely used in both basic and clinical research applications. However, the conventional noncoherent fluorescence and the bright or dark field images acquired spatially integrated and can only yield limited information. Few 3D morphological features of cells can be unveiled. Objective: Diffraction imaging techniques can be used to improve the flow cytometry system and to reflect some 3D morphological features of cells. Method: The newly developed diffraction imaging flow cytometry system (DIFC) in our previous studies could be used to compensate conventional flow cytometries to reflect a cell's 3D morphological features. In this study, we developed a method based on a Support Vector Machine to classify the diffraction images acquired from human acute leukaemia T (Jurkat) cells and Burkitt lymphoma B (Ramos) cells with the diffraction imaging flow cytometry system technique. Results: As a result, an accuracy of 99.38% with MCC value of 0.9875 was achieved in an independent testing dataset, which indicated that the DIFC system could differentiate the cells. Conclusion: It is indicated by the results that strong correlation exists between the characteristic parameters of the images and the 3D morphological features of cells. Since diffraction images correlate strongly to the 3D morphology of cells, this system could be used for studies concerning cellular morphology. Keywords: Flow cytometry, diffraction imaging, Jurkat, Ramos, support vector machine
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Most works in bioinformatics use SVM for classification.
“Most works in bioinformatics [41,46,47,48,49,50,51,52,53,54,55,56,57,58,59] also use SVM for classification.”
From An Efficient Classifier for Alzheimer’s Disease Genes Identification (2018) · cites this paper as [50]
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Su, R., Wu, H., Xu, B., Liu, X., & Wei, L. (2019) · IEEE/ACM Transactions on Computational Biology and Bioinformatics · doi:10.1109/tcbb.2018.2858756 · Cited by 134 · see citing works
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SeqSVM: A Sequence-Based Support Vector Machine Method for Identifying Antioxidant Proteins
Xu, L., Liang, G., Shi, S., & Liao, C. (2018) · International Journal of Molecular Sciences · doi:10.3390/ijms19061773 · Cited by 95 · see citing works
- Authors
- Zhang, N., Sa, Y., Guo, Y., Lin, W., Wang, P., & Feng, Y.
- Affiliations
- Tianjin University (CN)
- Department of Biomedical Engineering, Tianjin University, Tianjin Key Lab of BME Measurement, Tianjin 300072, China
- Tianjin Medical University Cancer Institute and Hospital (CN)
- Corresponding author
- Wang, Ping
- Feng, Yuanming
- Venue
- Current Bioinformatics
- Publisher
- Bentham Science Publishers Ltd.
- Published
- 2018-02-19
- Volume
- 13
- Issue
- 1
- Pages
- 50-56
- ISSN
- 1574-8936 (ISSN-L)
- OpenAlex
- W2438439291
- Cited by
- 37
- References
- 0
- Citations by year
- 2023: 2 · 2022: 1 · 2021: 2 · 2020: 16 · 2019: 10 · 2018: 6
- FWCI
- 2.52
- Type
- journal article
- Language
- en
- Open access
- closed
- Locations
- Current Bioinformatics (publishedVersion)
- Funders
- Tianjin University
- Tianjin Medical University
- Topics
- Physical Sciences › Physics and Astronomy › Atomic and Molecular Physics, and Optics › Digital Holography and Microscopy
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Biophysics › Cell Image Analysis Techniques
- Physical Sciences › Computer Science › Computer Vision and Pattern Recognition › Digital Imaging for Blood Diseases
- Keywords
- cell classification, Jurkat cells, Ramos cells, support vector machine, image texture features, 3D cell morphology, acute T-cell leukemia, Burkitt lymphoma, cell type discrimination
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