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Microevolution of Monophasic Salmonella Typhimurium during Epidemic, United Kingdom, 2005–2010
Open accessAbstract
Microevolution associated with emergence and expansion of new epidemic clones of bacterial pathogens holds the key to epidemiologic success. To determine microevolution associated with monophasic Salmonella Typhimurium during an epidemic, we performed comparative whole-genome sequencing and phylogenomic analysis of isolates from the United Kingdom and Italy during 2005-2012. These isolates formed a single clade distinct from recent monophasic epidemic clones previously described from North America and Spain. The UK monophasic epidemic clones showed a novel genomic island encoding resistance to heavy metals and a composite transposon encoding antimicrobial drug resistance genes not present in other Salmonella Typhimurium isolates, which may have contributed to epidemiologic success. A remarkable amount of genotypic variation accumulated during clonal expansion that occurred during the epidemic, including multiple independent acquisitions of a novel prophage carrying the sopE gene and multiple deletion events affecting the phase II flagellin locus. This high level of microevolution may affect antigenicity, pathogenicity, and transmission.
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Cites
Roary: rapid large-scale prokaryote pan genome analysis
Page, A. J., Cummins, C. A., Hunt, M., Wong, V. K., Reuter, S., Holden, M. T. G., Fookes, M., Falush, D., Keane, J. A., & Parkhill, J. (2015) · Bioinformatics · doi:10.1093/bioinformatics/btv421 · Cited by 5,736
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Cited by
Multiscale Evolutionary Dynamics of Host-Associated Microbiomes
Ferreiro, A., Crook, N., Gasparrini, A. J., & Dantas, G. (2018) · Cell · doi:10.1016/j.cell.2018.02.015 · Cited by 127
Hurtado, A., Ocejo, M., & Oporto, B. (2017) · Veterinary Microbiology · doi:10.1016/j.vetmic.2017.09.003 · Cited by 49
Source Attribution Study of Sporadic Salmonella Derby Cases in France
Sévellec, Y., Granier, S. A., Le Hello, S., Weill, F.-X., Guillier, L., Mistou, M.-Y., & Cadel-Six, S. (2020) · Frontiers in Microbiology · doi:10.3389/fmicb.2020.00889 · Cited by 41
Metadata
- Authors
- Petrovska, L., Mather, A. E., AbuOun, M., Branchu, P., Harris, S. R., Connor, T., Hopkins, K. L., Underwood, A., Lettini, A. A., Page, A., Bagnall, M., Wain, J., Parkhill, J., Dougan, G., Davies, R., & Kingsley, R. A.
- Venue
- Emerging Infectious Diseases
- Published
- 2016-04
- Volume
- 22
- Issue
- 4
- Pages
- 617-624
- ISSN
- 1080-6040 (ISSN-L)
- 1080-6059
- OpenAlex
- W2300239046
- Cited by
- 182
- References
- 1
- FWCI
- 23.90
- Type
- journal article
- Language
- en
- Open access
- diamond
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- Petrovska, L., Mather, A. E., AbuOun, M., Branchu, P., Harris, S. R., Connor, T., Hopkins, K. L., Underwood, A., Lettini, A. A., Page, A., Bagnall, M., Wain, J., Parkhill, J., Dougan, G., Davies, R., & Kingsley, R. A. (2016). Microevolution of Monophasic Salmonella Typhimurium during Epidemic, United Kingdom, 2005–2010. Emerging Infectious Diseases. https://doi.org/10.3201/eid2204.150531
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Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
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