The DOI matches its Crossref record; 3 of the 3 references it cites were found in a registry or an index.
Peptides: A Package for Data Mining of Antimicrobial Peptides
Open accessAbstract
Antimicrobial peptides (AMP) are a promising source of antibiotics with a broad spectrum activity against bacteria and low incidence of developing resistance.The mechanism by which an AMP executes its function depends on a set of computable physicochemical properties from the amino acid sequence.The Peptides package was designed to allow the quick and easy computation of ten structural characteristics own of the antimicrobial peptides, with the aim of generating data to increase the accuracy in classification and design of new amino acid sequences.Moreover, the options to read and plot XVG output files from GROMACS molecular dynamics package are included.
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Citations
Cites
Cationic peptides: effectors in innate immunity and novel antimicrobials
Hancock, R. E. (2001) · The Lancet Infectious Diseases · doi:10.1016/s1473-3099(01)00092-5 · Cited by 978 · cited 1×
“Antimicrobial peptides are a promising source of antibiotics with a broad spectrum activity against bacteria and low incidence of developing resistance (Hancock, 2001).”
BackgroundMolecular code for transmembrane-helix recognition by the Sec61 translocon.
Hessa, T., Meindl-Beinker, N. M., Bernsel, A., Kim, H., Sato, Y., Lerch-Bader, M., Nilsson, I., White, S. H., & von Heijne, G. (2007) · Nature · doi:10.1038/nature06387 · Cited by 708
The protein data bank: A computer-based archival file for macromolecular structures
Bernstein, F. C., Koetzle, T. F., Williams, G. J. B., Meyer, E. F., Brice, M. D., Rodgers, J. R., Kennard, O., Shimanouchi, T., & Tasumi, M. (1978) · Archives of Biochemistry and Biophysics · doi:10.1016/0003-9861(78)90204-7 · Cited by 359
Cited by
Meher, P. K., Sahu, T. K., Saini, V., & Rao, A. R. (2017) · Scientific Reports · doi:10.1038/srep42362 · Cited by 516
Cross-protein transfer learning substantially improves disease variant prediction
(2023) · doi:10.1186/s13059-023-03024-6 · Cited by 68
Ahmad Izaham, A. R., Ang, C.-S., Nie, S., Bird, L. E., Williamson, N. A., & Scott, N. E. (2021) · Journal of Proteome Research · doi:10.1021/acs.jproteome.0c00565 · Cited by 62
DEGRONOPEDIA: a web server for proteome-wide inspection of degrons
Szulc, N. A., Stefaniak, F., Piechota, M., Soszyńska, A., Piórkowska, G., Cappannini, A., Bujnicki, J. M., Maniaci, C., & Pokrzywa, W. (2024) · Nucleic Acids Research · doi:10.1093/nar/gkae238 · Cited by 35
Aggregation and disaggregation features of the human proteome
Määttä, T. A., Rettel, M., Sridharan, S., Helm, D., Kurzawa, N., Stein, F., & Savitski, M. M. (2020) · Molecular Systems Biology · doi:10.15252/msb.20209500 · Cited by 34
Metadata
- Authors
- Osorio, D., Rondón-Villarreal, P., & Torres, R.
- Venue
- The R Journal
- Publisher
- The R Foundation
- Published
- 2015
- Volume
- 7
- Issue
- 1
- Pages
- 4
- ISSN
- 2073-4859 (ISSN-L)
- OpenAlex
- W2789857505
- Cited by
- 430
- References
- 3
- FWCI
- 3.92
- Type
- journal article
- Language
- en
- Open access
- hybrid
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