Cited by 274Microbial bioremediation and biosurfactantsEnzyme-mediated dye degradationMicrobial Fuel Cells and Bioremediation

Construction of microbial consortia for microbial degradation of complex compounds

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Cao, Zhibei, Yan, Wenlong, Ding, Mingzhu, Yuan, Yingjin·2022·Frontiers in Bioengineering and Biotechnology

Abstract

Increasingly complex synthetic environmental pollutants are prompting further research into bioremediation, which is one of the most economical and safest means of environmental restoration. From the current research, using microbial consortia to degrade complex compounds is more advantageous compared to using isolated bacteria, as the former is more adaptable and stable within the growth environment and can provide a suitable catalytic environment for each enzyme required by the biodegradation pathway. With the development of synthetic biology and gene-editing tools, artificial microbial consortia systems can be designed to be more efficient, stable, and robust, and they can be used to produce high-value-added products with their strong degradation ability. Furthermore, microbial consortia systems are shown to be promising in the degradation of complex compounds. In this review, the strategies for constructing stable and robust microbial consortia are discussed. The current advances in the degradation of complex compounds by microbial consortia are also classified and detailed, including plastics, petroleum, antibiotics, azo dyes, and some pollutants present in sewage. Thus, this paper aims to support some helps to those who focus on the degradation of complex compounds by microbial consortia.

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  1. Abbasian F. Lockington R. Mallavarapu M. Naidu R. (2015). A comprehensive review of aliphatic hydrocarbon biodegradation by bacteria. Appl. Biochem. Biotechnol. 176 (3), 670– 699. 10.1007/s12010-015-1603-5 25935219 · DOI
  2. Ahmad F. Zhu D. Sun J. (2020). Bacterial chemotaxis: A way forward to aromatic compounds biodegradation. Environ. Sci. Eur. 32 (1), 52. 10.1186/s12302-020-00329-2 · DOI
  3. An X. Zong Z. Zhang Q. Li Z. Zhong M. Long H. (2022). Novel thermo-alkali-stable cellulase-producing Serratia sp. AXJ-M cooperates with Arthrobacter sp. AXJ-M1 to improve degradation of cellulose in papermaking black liquor. J. Hazard. Mater. 421, 126811. 10.1016/j.jhazmat.2021.126811 34388933 · DOI
  4. Andrady A. L. (2011). Microplastics in the marine environment. Mar. Pollut. Bull. 62 (8), 1596– 1605. 10.1016/j.marpolbul.2011.05.030 21742351 · DOI · Paper page
  5. Azubuike C. C. Chikere C. B. Okpokwasili G. C. (2016). Bioremediation techniques-classification based on site of application: Principles, advantages, limitations and prospects. World J. Microbiol. Biotechnol. 32 (11), 180. 10.1007/s11274-016-2137-x 27638318 PMC5026719 · DOI
  6. Bacosa H. P. Inoue C. (2015). Polycyclic aromatic hydrocarbons (PAHs) biodegradation potential and diversity of microbial consortia enriched from tsunami sediments in Miyagi, Japan. J. Hazard. Mater. 283, 689– 697. 10.1016/j.jhazmat.2014.09.068 25464311 · DOI
  7. Barancheshme F. Munir M. (2018). Strategies to combat antibiotic resistance in the wastewater treatment plants. Front. Microbiol. 8, 2603. 10.3389/fmicb.2017.02603 29387043 PMC5776126 · DOI
  8. Bardají D. K. R. Moretto J. A. S. Furlan J. P. R. Stehling E. G. (2020). A mini-review: Current advances in polyethylene biodegradation. World J. Microbiol. Biotechnol. 36 (2), 32. 10.1007/s11274-020-2808-5 32060663 · DOI
  9. Bayer T. S. Widmaier D. M. Temme K. Mirsky E. A. Santi D. V. Voigt C. A. (2009). Synthesis of methyl halides from biomass using engineered microbes. J. Am. Chem. Soc. 131 (18), 6508– 6515. 10.1021/ja809461u 19378995 · DOI
  10. Biswas A. Mailapalli D. R. Raghuwanshi N. S. (2021). Treated municipal wastewater to fulfil crop water footprints and irrigation demand – A review. Water Supply 21 (4), 1398– 1409. 10.2166/ws.2021.031 · DOI
  11. Bouju H. Ricken B. Beffa T. Corvini P. F. X. Kolvenbach B. A. (2012). Isolation of bacterial strains capable of sulfamethoxazole mineralization from an acclimated membrane bioreactor. Appl. Environ. Microbiol. 78 (1), 277– 279. 10.1128/aem.05888-11 22020509 PMC3255614 · DOI
  12. Costa A. S. Romao L. P. C. Araujo B. R. Lucas S. C. O. Maciel S. T. A. Wisniewski A. Jr. (2012). Environmental strategies to remove volatile aromatic fractions (BTEX) from petroleum industry wastewater using biomass. Bioresour. Technol. 105, 31– 39. 10.1016/j.biortech.2011.11.096 22178487 · DOI
  13. Dhar K. Subashchandrabose S. R. Venkateswarlu K. Krishnan K. Megharaj M. (2020). Anaerobic microbial degradation of polycyclic aromatic hydrocarbons: A comprehensive review. Rev. Environ. Contam. Toxicol. 251, 25– 108. 10.1007/398_2019_29 31011832 · DOI
  14. Embree M. Liu J. K. Al-Bassam M. M. Zengler K. (2015). Networks of energetic and metabolic interactions define dynamics in microbial communities. Proc. Natl. Acad. Sci 112 (50), 15450– 15455. 10.1073/pnas.1506034112 26621749 PMC4687543 · DOI · Paper page
  15. Gan Z. Zhang H. (2019). Pmbd: A comprehensive plastics microbial biodegradation database. Database. 2019, baz119. 10.1093/database/baz119 31738435 PMC6859810 · DOI
  16. Gaytán I. Sánchez-Reyes A. Burelo M. Vargas-Suárez M. Liachko I. Press M. (2020). Degradation of recalcitrant polyurethane and xenobiotic additives by a selected landfill microbial community and its biodegradative potential revealed by proximity ligation-based metagenomic analysis. Front. Microbiol. 10, 2986. 10.3389/fmicb.2019.02986 32038514 PMC6987047 · DOI
  17. Ge C. Yu Z. Sheng H. Shen X. Sun X. Zhang Y. (2022). Redesigning regulatory components of quorum-sensing system for diverse metabolic control. Nat. Commun. 13 (1), 2182. 10.1038/s41467-022-29933-x 35449138 PMC9023504 · DOI
  18. Ghorbannezhad H. Moghimi H. Dastgheib S. M. M. (2018). Evaluation of heavy petroleum degradation using bacterial-fungal mixed cultures. Ecotoxicol. Environ. Saf. 164, 434– 439. 10.1016/j.ecoenv.2018.08.046 30144703 · DOI
  19. Ghosal D. Ghosh S. Dutta T. K. Ahn Y. (2016). Current state of knowledge in microbial degradation of polycyclic aromatic hydrocarbons (PAHs): A review. Front. Microbiol. 7, 1369. 10.3389/fmicb.2016.01369 27630626 PMC5006600 · DOI
  20. Goers L. Freemont P. Polizzi K. M. (2014). Co-Culture systems and technologies: Taking synthetic biology to the next level. J. R. Soc. Interface 11 (96), 20140065. 10.1098/rsif.2014.0065 24829281 PMC4032528 · DOI
  21. Grilli J. Barabas G. Michalska-Smith M. J. Allesina S. (2017). Higher-order interactions stabilize dynamics in competitive network models. Nature 548 (7666), 210– 213. 10.1038/nature23273 28746307 · DOI
  22. Gu H. Lou J. Wang H. Yang Y. Wu L. Wu J. (2016). Biodegradation, biosorption of phenanthrene and its trans-membrane transport by massilia sp WF1 and phanerochaete chrysosporium. Front. Microbiol. 7, 38. 10.3389/fmicb.2016.00038 26858710 PMC4731505 · DOI
  23. Gupta S. Pathak B. Fulekar M. H. (2015). Molecular approaches for biodegradation of polycyclic aromatic hydrocarbon compounds: A review. Rev. Environ. Sci. Biotechnol. 14 (2), 241– 269. 10.1007/s11157-014-9353-3 · DOI
  24. Harcombe W. R. Chacon J. M. Adamowicz E. M. Chubiz L. M. Marx C. J. (2018). Evolution of bidirectional costly mutualism from byproduct consumption. Proc. Natl. Acad. Sci. U. S. A. 115 (47), 12000– 12004. 10.1073/pnas.1810949115 30348787 PMC6255176 · DOI · Paper page
  25. Ho B. T. Roberts T. K. Lucas S. (2017). An overview on biodegradation of polystyrene and modified polystyrene: The microbial approach. Crit. Rev. Biotechnol. 38 (2), 308– 320. 10.1080/07388551.2017.1355293 28764575 · DOI
  26. Ho B. T. Roberts T. K. Lucas S. (2018). An overview on biodegradation of polystyrene and modified polystyrene: The microbial approach. Crit. Rev. Biotechnol. 38 (2), 308– 320. 10.1080/07388551.2017.1355293 28764575 · DOI
  27. Holliger C. Gaspard S. Glod G. Heijman C. Schumacher W. Schwarzenbach R. P. (1997). Contaminated environments in the subsurface and bioremediation: Organic contaminants. FEMS Microbiol. Rev. 20 (3-4), 517– 523. 10.1111/j.1574-6976.1997.tb00334.x 9299718 · DOI
  28. Hu B. Wang M. Geng S. Wen L. Wu M. Nie Y. (2020). Metabolic exchange with non-alkane-consuming Pseudomonas stutzeri slg510a3-8 improves n-alkane biodegradation by the alkane degrader Dietzia sp. strain DQ12-45-1b. Appl. Environ. Microbiol. 86 (8), e02931– e02919. 10.1128/AEM.02931-19 32033953 PMC7117941 · DOI
  29. Ibrar M. Zhang H. (2020). Construction of a hydrocarbon-degrading consortium and characterization of two new lipopeptides biosurfactants. Sci. Total Environ. 714, 136400. 10.1016/j.scitotenv.2019.136400 31982734 · DOI
  30. Jawed K. Yazdani S. S. Koffas M. A. (2019). Advances in the development and application of microbial consortia for metabolic engineering. Metab. Eng. Commun. 9, e00095. 10.1016/j.mec.2019.e00095 31720211 PMC6838517 · DOI
  31. Jiang Y. Lv Y. Wu R. Lu J. Dong W. Zhou J. (2020). Consolidated bioprocessing performance of a two-species microbial consortium for butanol production from lignocellulosic biomass. Biotechnol. Bioeng. 117 (10), 2985– 2995. 10.1002/bit.27464 32946127 · DOI
  32. Johnston T. G. Yuan S.-F. Wagner J. M. Yi X. Saha A. Smith P. (2020). Compartmentalized microbes and co-cultures in hydrogels for on-demand bioproduction and preservation. Nat. Commun. 11 (1), 563. 10.1038/s41467-020-14371-4 32019917 PMC7000784 · DOI
  33. Jones J. A. Vernacchio V. R. Collins S. M. Shirke A. N. Xiu Y. Englaender J. A. (2017). Complete biosynthesis of anthocyanins using E. coli polycultures. Mbio 8 (3), e00621– 17. 10.1128/mBio.00621-17 28588129 PMC5461408 · DOI
  34. Jones J. A. Wang X. (2018). Use of bacterial co-cultures for the efficient production of chemicals. Curr. Opin. Biotechnol. 53, 33– 38. 10.1016/j.copbio.2017.11.012 29207331 · DOI
  35. Joshi T. Iyengar L. Singh K. Garg S. (2008). Isolation, identification and application of novel bacterial consortium TJ-1 for the decolourization of structurally different azo dyes. Bioresour. Technol. 99 (15), 7115– 7121. 10.1016/j.biortech.2007.12.074 18289845 · DOI
  36. Kaeberlein T. Lewis K. Epstein S. S. (2002). Isolating "uncultivable" microorganisms in pure culture in a simulated natural environment. Science 296 (5570), 1127– 1129. 10.1126/science.1070633 12004133 · DOI
  37. Kelsic E. D. Zhao J. Vetsigian K. Kishony R. (2015). Counteraction of antibiotic production and degradation stabilizes microbial communities. Nature 521 (7553), 516– 519. 10.1038/nature14485 25992546 PMC4551410 · DOI · Paper page
  38. Kong Z. Li L. Kurihara R. Kubota K. Li Y.-Y. (2018). Anaerobic treatment of N, N-dimethylformamide-containing wastewater by co-culturing two sources of inoculum. Water Res. 139, 228– 239. 10.1016/j.watres.2018.03.078 29653358 · DOI
  39. Kuhar F. Castiglia V. Levin L. (2015). Enhancement of laccase production and malachite green decolorization by co-culturing Ganoderma lucidum and Trametes versicolor in solid-state fermentation. Int. Biodeterior. Biodegrad. 104, 238– 243. 10.1016/j.ibiod.2015.06.017 · DOI
  40. Kumar A. Ergas S. Yuan X. Sahu A. Zhang Q. Dewulf J. (2010). Enhanced CO2 fixation and biofuel production via microalgae: Recent developments and future directions. Trends Biotechnol. 28 (7), 371– 380. 10.1016/j.tibtech.2010.04.004 20541270 · DOI
  41. Kumar M. Jaiswal S. Sodhi K. K. Shree P. Singh D. K. Agrawal P. K. (2019). Antibiotics bioremediation: Perspectives on its ecotoxicity and resistance. Environ. Int. 124, 448– 461. 10.1016/j.envint.2018.12.065 30684803 · DOI
  42. Larcher S. Yargeau V. (2011). Biodegradation of sulfamethoxazole by individual and mixed bacteria. Appl. Microbiol. Biotechnol. 91 (1), 211– 218. 10.1007/s00253-011-3257-8 21499763 · DOI
  43. Larcher S. Yargeau V. (2013). The effect of ozone on the biodegradation of 17 alpha-ethinylestradiol and sulfamethoxazole by mixed bacterial cultures. Appl. Microbiol. Biotechnol. 97 (5), 2201– 2210. 10.1007/s00253-012-4054-8 22534821 · DOI
  44. Law K. L. (2017). Plastics in the marine environment. Ann. Rev. Mar. Sci. 9 (1), 205– 229. 10.1146/annurev-marine-010816-060409 27620829 · DOI · Paper page
  45. Lawson C. E. Harcombe W. R. Hatzenpichler R. Lindemann S. R. Löffler F. E. O’Malley M. A. (2019). Common principles and best practices for engineering microbiomes. Nat. Rev. Microbiol. 17 (12), 725– 741. 10.1038/s41579-019-0255-9 31548653 PMC8323346 · DOI
  46. Lellis B. Fávaro-Polonio C. Pamphile J. A. Polonio J. C. (2019). Effects of textile dyes on health and the environment and bioremediation potential of living organisms. Biotechnol. Res. Innovation 3 (2), 275– 290. 10.1016/j.biori.2019.09.001 · DOI · Paper page
  47. Li B. Zhang T. Yang Z. (2019a). Immobilizing unicellular microalga on pellet-forming filamentous fungus: Can this provide new insights into the remediation of arsenic from contaminated water? Bioresour. Technol. 284, 231– 239. 10.1016/j.biortech.2019.03.128 30947137 · DOI
  48. Li C. Xiao S. Ju L.-K. (2016). Cultivation of phagotrophic algae with waste activated sludge as a fast approach to reclaim waste organics. Water Res. 91, 195– 202. 10.1016/j.watres.2016.01.021 26799709 · DOI
  49. Li H. Ding M. (2021). Advances in biodegradation of petroleum hydrocarbons. Sheng Wu Gong Cheng Xue Bao 37 (8), 2765– 2778. 10.13345/j.cjb.200611 34472294 · DOI
  50. Li H. L. Lai R. Q. Jin Y. L. Fang X. X. Cui K. Sun S. S. (2020). Directional culture of petroleum hydrocarbon degrading bacteria for enhancing crude oil recovery. J. Hazard. Mater. 390, 122160. 10.1016/j.jhazmat.2020.122160 31999958 · DOI
  51. Li X. Zhou Z. Li W. Yan Y. Shen X. Wang J. (2022). Design of stable and self-regulated microbial consortia for chemical synthesis. Nat. Commun. 13 (1), 1554. 10.1038/s41467-022-29215-6 35322005 PMC8943006 · DOI
  52. Li Z. Wang X. Zhang H. (2019b). Balancing the non-linear rosmarinic acid biosynthetic pathway by modular co-culture engineering. Metab. Eng. 54, 1– 11. 10.1016/j.ymben.2019.03.002 30844431 · DOI
  53. Liao X. Li B. Zou R. Dai Y. Xie S. Yuan B. (2016a). Biodegradation of antibiotic ciprofloxacin: Pathways, influential factors, and bacterial community structure. Environ. Sci. Pollut. Res. 23 (8), 7911– 7918. 10.1007/s11356-016-6054-1 26762935 · DOI
  54. Liao X. Li B. Zou R. Xie S. Yuan B. (2016b). Antibiotic sulfanilamide biodegradation by acclimated microbial populations. Appl. Microbiol. Biotechnol. 100 (5), 2439– 2447. 10.1007/s00253-015-7133-9 26563551 · DOI
  55. Lu H. Villada J. C. Lee P. K. H. (2019). Modular metabolic engineering for biobased chemical production. Trends Biotechnol. 37 (2), 152– 166. 10.1016/j.tibtech.2018.07.003 30064888 · DOI
  56. Luo Q. Ying H. Hou D. Y. Zhang J. G. Shen X. R. (2015a). GPo1 <italic&gt;alkB&lt;/italic&gt; gene expression for improvement of the degradation of diesel oil by a bacterial consortium. Braz. J. Microbiol. 46 (3), 649– 657. 10.1590/S1517-838246320120226 26413044 PMC4568855 · DOI
  57. Luo X. Tsao C. Y. Wu H. C. Quan D. N. Payne G. F. Rubloff G. W. (2015b). Distal modulation of bacterial cell-cell signalling in a synthetic ecosystem using partitioned microfluidics. Lab. Chip 15 (8), 1842– 1851. 10.1039/c5lc00107b 25690330 · DOI
  58. Malik K. Salama E.-S. El-Dalatony M. M. Jalalah M. Harraz F. A. Al-Assiri M. S. (2021). Co-fermentation of immobilized yeasts boosted bioethanol production from pretreated cotton stalk lignocellulosic biomass: Long-term investigation. Industrial Crops Prod. 159, 113122. 10.1016/j.indcrop.2020.113122 · DOI
  59. Mashruwala A. A. Qin B. Bassler B. L. (2022). Quorum-sensing- and type VI secretion-mediated spatiotemporal cell death drives genetic diversity in Vibrio cholerae. Cell 185, 3966– 3979. e13. 10.1016/j.cell.2022.09.003 36167071 PMC9623500 · DOI
  60. Mayfield M. M. Stouffer D. B. (2017). Higher-order interactions capture unexplained complexity in diverse communities. Nat. Ecol. Evol. 1 (3), 0062. 10.1038/s41559-016-0062 28812740 · DOI
  61. McCarty N. S. Ledesma-Amaro R. (2019). Synthetic biology tools to engineer microbial communities for biotechnology. Trends Biotechnol. 37 (2), 181– 197. 10.1016/j.tibtech.2018.11.002 30497870 PMC6340809 · DOI
  62. McDonald I. R. Miguez C. B. Rogge G. Bourque D. Wendlandt K. D. Groleau D. (2006). Diversity of soluble methane monooxygenase-containing methanotrophs isolated from polluted environments. FEMS Microbiol. Lett. 255 (2), 225– 232. 10.1111/j.1574-6968.2005.00090.x 16448499 · DOI
  63. Mujtaba G. Rizwan M. Lee K. (2017). Removal of nutrients and COD from wastewater using symbiotic co-culture of bacterium Pseudomonas putida and immobilized microalga Chlorella vulgaris. J. Industrial Eng. Chem. 49, 145– 151. 10.1016/j.jiec.2017.01.021 · DOI
  64. Park H. Patel A. Hunt K. A. Henson M. A. Carlson R. P. (2020). Artificial consortium demonstrates emergent properties of enhanced cellulosic-sugar degradation and biofuel synthesis. npj Biofilms Microbiomes 6 (1), 59. 10.1038/s41522-020-00170-8 33268782 PMC7710750 · DOI
  65. Patle S. Lal B. (2007). Ethanol production from hydrolysed agricultural wastes using mixed culture of Zymomonas mobilis and Candida tropicalis. Biotechnol. Lett. 29 (12), 1839– 1843. 10.1007/s10529-007-9493-4 17657407 · DOI
  66. Puentes-Tellez P. E. Salles J. F. (2018). Construction of effective minimal active microbial consortia for lignocellulose degradation. Microb. Ecol. 76 (2), 419– 429. 10.1007/s00248-017-1141-5 29392382 PMC6061470 · DOI
  67. Pütz E. Gazanis A. Keltsch N. G. Jegel O. Pfitzner F. Heermann R. (2022). Communication breakdown: Into the molecular mechanism of biofilm inhibition by CeO2 nanocrystal enzyme mimics and how it can Be exploited. ACS Nano 16, 16091– 16108. 10.1021/acsnano.2c04377 36174231 · DOI
  68. Qi X. H. Ma Y. Chang H. C. Li B. Z. Ding M. Z. Yuan Y. J. (2021b). Evaluation of PET degradation using artificial microbial consortia. Front. Microbiol. 12, 778828. 10.3389/fmicb.2021.778828 35003008 PMC8733400 · DOI
  69. Qi X. Ma Y. Chang H. Li B. Ding M. Yuan Y. (2021a). Evaluation of PET degradation using artificial microbial consortia. Front. Microbiol. 12, 778828. 10.3389/fmicb.2021.778828 35003008 PMC8733400 · DOI
  70. Qi X. Yan W. Cao Z. Ding M. Z. Yuan Y. J. (2022). Current advances in the biodegradation and bioconversion of polyethylene terephthalate. Microorganisms 10 (1), 39. 10.3390/microorganisms10010039 PMC8779501 35056486 · DOI
  71. Qian X. Chen L. Sui Y. Chen C. Zhang W. Zhou J. (2020). Biotechnological potential and applications of microbial consortia. Biotechnol. Adv. 40, 107500. 10.1016/j.biotechadv.2019.107500 31862233 · DOI
  72. Qian Y. Xu M. Deng T. Hu W. He Z. Yang X. (2021). Synergistic interactions of Desulfovibrio and Petrimonas for sulfate-reduction coupling polycyclic aromatic hydrocarbon degradation. J. Hazard. Mater. 407, 124385. 10.1016/j.jhazmat.2020.124385 33229269 · DOI
  73. Raja R. Hemaiswarya S. Kumar N. A. Sridhar S. Rengasamy R. (2008). A perspective on the biotechnological potential of microalgae. Crit. Rev. Microbiol. 34 (2), 77– 88. 10.1080/10408410802086783 18568862 · DOI · Paper page
  74. Ramanan R. Kim B.-H. Cho D.-H. Oh H.-M. Kim H.-S. (2016). Algae-bacteria interactions: Evolution, ecology and emerging applications. Biotechnol. Adv. 34 (1), 14– 29. 10.1016/j.biotechadv.2015.12.003 26657897 · DOI · Paper page
  75. Ramsay J. P. Bastholm T. R. Callum J. V. Dinah D. T. John T. S. Liam K. H. (2022). An epigenetic switch activates bacterial quorum sensing and horizontal transfer of an integrative and conjugative element. Nucleic Acids Res. 50 (2), 975– 988. 10.1093/nar/gkab1217 34904658 PMC8789080 · DOI
  76. Roell G. W. Zha J. Carr R. R. Koffas M. A. Fong S. S. Tang Y. J. (2019). Engineering microbial consortia by division of labor. Microb. Cell Fact. 18 (1), 35. 10.1186/s12934-019-1083-3 30736778 PMC6368712 · DOI
  77. Ron E. Z. Rosenberg E. (2014). Enhanced bioremediation of oil spills in the sea. Curr. Opin. Biotechnol. 27, 191– 194. 10.1016/j.copbio.2014.02.004 24657912 · DOI
  78. Ru J. Huo Y. Yang Y. (2020). Microbial degradation and valorization of plastic wastes. Front. Microbiol. 11, 442. 10.3389/fmicb.2020.00442 32373075 PMC7186362 · DOI · Paper page
  79. Said S. B. Or D. (2017). Synthetic microbial ecology: Engineering habitats for modular consortia. Front. Microbiol. 8, 1125. 10.3389/fmicb.2017.01125 28670307 PMC5472676 · DOI
  80. Sajna K. V. Sukumaran R. K. Gottumukkala L. D. Pandey A. (2015). Crude oil biodegradation aided by biosurfactants from Pseudozyma sp NII 08165 or its culture broth. Bioresour. Technol. 191, 133– 139. 10.1016/j.biortech.2015.04.126 25985416 · DOI
  81. Salim S. Kosterink N. R. Wacka N. D. T. Vermue M. H. Wijffels R. H. (2014). Mechanism behind autoflocculation of unicellular green micro algae Ettlia texensis. J. Biotechnol. 174, 34– 38. 10.1016/j.jbiotec.2014.01.026 24480568 · DOI
  82. Samir Ali S. Al-Tohamy R. Khalil M. A. Ho S.-H. Fu Y. Sun J. (2022). Exploring the potential of a newly constructed manganese peroxidase-producing yeast consortium for tolerating lignin degradation inhibitors while simultaneously decolorizing and detoxifying textile azo dye wastewater. Bioresour. Technol. 351, 126861. 10.1016/j.biortech.2022.126861 35183728 · DOI
  83. Sánchez C. (2020). Fungal potential for the degradation of petroleum-based polymers: An overview of macro- and microplastics biodegradation. Biotechnol. Adv. 40, 107501. 10.1016/j.biotechadv.2019.107501 31870825 · DOI
  84. Selim M. T. Salem S. S. Mohamed A. A. El-Gamal M. S. Awad M. F. Fouda A. (2021). Biological treatment of real textile effluent using Aspergillus flavus and Fusarium oxysporium and their consortium along with the evaluation of their phytotoxicity. J. Fungi (Basel). 7 (3), 193. 10.3390/jof7030193 33803129 PMC8001397 · DOI
  85. Sepehri A. Sarrafzadeh M.-H. Avateffazeli M. (2020). Interaction between Chlorella vulgaris and nitrifying-enriched activated sludge in the treatment of wastewater with low C/N ratio. J. Clean. Prod. 247, 119164. 10.1016/j.jclepro.2019.119164 · DOI
  86. Shahab R. L. Brethauer S. Davey M. P. Smith A. G. Vignolini S. Luterbacher J. S. (2020). A heterogeneous microbial consortium producing short-chain fatty acids from lignocellulose. Science 369 (6507), eabb1214. 10.1126/science.abb1214 32855308 · DOI
  87. Shahab R. L. Luterbacher J. S. Brethauer S. Studer M. H. (2018). Consolidated bioprocessing of lignocellulosic biomass to lactic acid by a synthetic fungal-bacterial consortium. Biotechnol. Bioeng. 115 (5), 1207– 1215. 10.1002/bit.26541 29315476 · DOI
  88. Shanmugam B. K. Easwaran S. N. Lakra R. Deepa P. R. Mahadevan S. (2017). Metabolic pathway and role of individual species in the bacterial consortium for biodegradation of azo dye: A biocalorimetric investigation. Chemosphere 188, 81– 89. 10.1016/j.chemosphere.2017.08.138 28869849 · DOI
  89. Shen Y.-P. Niu F.-X. Yan Z.-B. Fong L. S. Huang Y.-B. Liu J.-Z. (2020). Recent advances in metabolically engineered microorganisms for the production of aromatic chemicals derived from aromatic amino acids. Front. Bioeng. Biotechnol. 8, 407. 10.3389/fbioe.2020.00407 32432104 PMC7214760 · DOI
  90. Shi Y. Yang Z. Xing L. Zhang X. Li X. Zhang D. (2021). Recent advances in the biodegradation of azo dyes. World J. Microbiol. Biotechnol. 37 (8), 137. 10.1007/s11274-021-03110-6 34273009 · DOI
  91. Shuang W. U. Liu C. Yang L. Long H. Xuan J. Jiang M. (2019). Screening, identification and degradation characteristics of threephenanthrene-degrading bacteria isolated form mangrove Soil. Environ. Sci. Technol. 42 (3), 73– 79. 10.19672/j.cnki.1003-6504.2019.03.010 · DOI
  92. Sierra J. D. M. Wang W. Cerqueda-Garcia D. Oosterkamp M. J. Spanjers H. van Lier J. B. (2018). Temperature susceptibility of a mesophilic anaerobic membrane bioreactor treating saline phenol-containing wastewater. Chemosphere 213, 92– 102. 10.1016/j.chemosphere.2018.09.023 30216817 · DOI
  93. Song H. Ding M.-Z. Jia X.-Q. Ma Q. Yuan Y.-J. (2014). Synthetic microbial consortia: From systematic analysis to construction and applications. Chem. Soc. Rev. 43 (20), 6954– 6981. 10.1039/C4CS00114A 25017039 · DOI
  94. Striednig B. Hilbi H. (2022). Bacterial quorum sensing and phenotypic heterogeneity: How the collective shapes the individual. Trends Microbiol. 30 (4), 379– 389. 10.1016/j.tim.2021.09.001 34598862 · DOI
  95. Su H. Chen Q. Zhao J. Chi Y. Jia D. Yao K. (2018). Appropriate conditions of beta-cypermethrin degradation by a co-culture of microorganism. Food Ferment. Industries 44 (7), 8– 12. 10.1073/pnas.80.1.178 · DOI
  96. Subashchandrabose S. R. Ramakrishnan B. Megharaj M. Venkateswarlu K. Naidu R. (2013). Mixotrophic cyanobacteria and microalgae as distinctive biological agents for organic pollutant degradation. Environ. Int. 51, 59– 72. 10.1016/j.envint.2012.10.007 23201778 · DOI
  97. Sullivan K. P. Werner A. Z. Ramirez K. J. Ellis L. D. Bussard J. R. Black B. A. (2022). Mixed plastics waste valorization through tandem chemical oxidation and biological funneling. Science 378 (6616), 207– 211. 10.1126/science.abo4626 36227984 · DOI
  98. Tondro H. Musivand S. Zilouei H. Bazarganipour M. Zargoosh K. (2020). Biological production of hydrogen and acetone- butanol-ethanol from sugarcane bagasse and rice straw using co-culture of Enterobacter aerogenes and Clostridium acetobutylicum. Biomass Bioenergy 142, 105818. 10.1016/j.biombioe.2020.105818 · DOI
  99. Tribedi P. Gupta A. D. Sil A. K. (2015). Adaptation of Pseudomonas sp. AKS2 in biofilm on low-density polyethylene surface: An effective strategy for efficient survival and polymer degradation. Bioresour. Bioprocess. 2 (1), 14. 10.1186/s40643-015-0044-x · DOI
  100. Vargas-Suárez M. Fernández-Cruz V. Loza-Tavera H. (2019). Biodegradation of polyacrylic and polyester polyurethane coatings by enriched microbial communities. Appl. Microbiol. Biotechnol. 103 (7), 3225– 3236. 10.1007/s00253-019-09660-y 30729284 · DOI
  101. Varjani S. J. Rana D. P. Bateja S. Upasani V. N. (2013). Isolation and screening for hydrocarbon utilizing bacteria (HUB) from petroleum samples. Int. J. Curr. Microbiol. Appl. Sci. 2 (4), 48– 60.
  102. Varjani S. J. Rana D. P. Jain A. K. Bateja S. Upasani V. N. (2015). Synergistic ex-situ biodegradation of crude oil by halotolerant bacterial consortium of indigenous strains isolated from on shore sites of Gujarat, India. Int. Biodeterior. Biodegrad. 103, 116– 124. 10.1016/j.ibiod.2015.03.030 · DOI
  103. Varjani S. J. Upasani V. N. (2016). Carbon spectrum utilization by an indigenous strain of Pseudomonas aeruginosa NCIM 5514: Production, characterization and surface active properties of biosurfactant. Bioresour. Technol. 221, 510– 516. 10.1016/j.biortech.2016.09.080 27677153 · DOI
  104. Varjani S. J. Upasani V. N. (2013). Comparative studies on bacterial consortia for hydrocarbon degradation. Int. J. Innov. Res. Sci. Eng. Technol. 2 (10), 5377– 5383.
  105. Wang C. Li Y. Tan H. Zhang A. Xie Y. Wu B. (2019a). A novel microbe consortium, nano-visible light photocatalyst and microcapsule system to degrade PAHs. Chem. Eng. J. 359, 1065– 1074. 10.1016/j.cej.2018.11.077 · DOI
  106. Wang S. Tang H. Peng F. Yu X. Su H. Xu P. (2019b). Metabolite-based mutualism enhances hydrogen production in a two-species microbial consortium. Commun. Biol. 2, 82. 10.1038/s42003-019-0331-8 30854474 PMC6395672 · DOI
  107. Wang Y. Li H. Liu Y. Zhou M. Ding M. Yuan Y. (2022). Construction of synthetic microbial consortia for 2-keto-L-gulonic acid biosynthesis. Synthetic Syst. Biotechnol. 7 (1), 481– 489. 10.1016/j.synbio.2021.12.001 PMC8671096 34977392 · DOI
  108. Wang Z. Cao G. Zheng J. Fu D. Song J. Zhang J. (2015). Developing a mesophilic co-culture for direct conversion of cellulose to butanol in consolidated bioprocess. Biotechnol. Biofuels 8, 84. 10.1186/s13068-015-0266-3 26089984 PMC4471926 · DOI
  109. Webb H. K. Arnott J. Crawford R. J. Ivanova E. P. (2013). Plastic degradation and its environmental implications with special reference to poly(ethylene terephthalate). Polymers 5 (1), 1– 18. 10.3390/polym5010001 · DOI
  110. Wen Z. Ledesma-Amaro R. Lu M. Jiang Y. Gao S. Jin M. (2020). Combined evolutionary engineering and genetic manipulation improve low pH tolerance and butanol production in a synthetic microbial Clostridium community. Biotechnol. Bioeng. 117 (7), 2008– 2022. 10.1002/bit.27333 32170874 · DOI
  111. Wijffels R. H. Kruse O. Hellingwerf K. J. (2013). Potential of industrial biotechnology with cyanobacteria and eukaryotic microalgae. Curr. Opin. Biotechnol. 24 (3), 405– 413. 10.1016/j.copbio.2013.04.004 23647970 · DOI
  112. Wu Q. Zhi Y. Xu Y. (2018). Systematically engineering the biosynthesis of a green biosurfactant surfactin by Bacillus subtilis 168. Metab. Eng. 52, 87– 97. 10.1016/j.ymben.2018.11.004 30453038 · DOI
  113. Wu X. Zhou X. Wu X. Luo K. Gu Y. Zhou H. (2020). Construction of tetracycline-degrading bacterial Co-culture system and community analysis of wastewater remediation. Biotechnol. Bull. 36 (10), 116– 126. 10.1016/0379-0738(83)90103-2 · DOI
  114. Xiong J.-Q. Miracle M. B. Jeon B.-H. (2017). Ecotoxicological effects of enrofloxacin and its removal by monoculture of microalgal species and their consortium. Environ. Pollut. 226, 486– 493. 10.1016/j.envpol.2017.04.044 28449968 · DOI
  115. Yan R. Wang Y. Li J. Wang X. Wang Y. (2022). Determination of the lower limits of antibiotic biodegradation and the fate of antibiotic resistant genes in activated sludge: Both nitrifying bacteria and heterotrophic bacteria matter. J. Hazard. Mater. 425, 127764. 10.1016/j.jhazmat.2021.127764 34799165 · DOI
  116. Yu K. Yi S. Li B. Guo F. Peng X. Wang Z. (2019). An integrated meta-omics approach reveals substrates involved in synergistic interactions in a bisphenol A (BPA)-degrading microbial community. Microbiome 7 (1), 16. 10.1186/s40168-019-0634-5 30728080 PMC6366072 · DOI
  117. Zanaroli G. Di Toro S. Todaro D. Varese G. C. Bertolotto A. Fava F. (2010). Characterization of two diesel fuel degrading microbial consortia enriched from a non acclimated, complex source of microorganisms. Microb. Cell Fact. 9, 10. 10.1186/1475-2859-9-10 20158909 PMC2830956 · DOI
  118. Zhang C. Hong K. (2020). Production of terpenoids by synthetic biology approaches. Front. Bioeng. Biotechnol. 8, 347. 10.3389/fbioe.2020.00347 32391346 PMC7193017 · DOI
  119. Zhang H. Jia Y. Khanal S. K. Lu H. Fang H. Zhao Q. (2018). Understanding the role of extracellular polymeric substances on ciprofloxacin adsorption in aerobic sludge, anaerobic sludge, and sulfate-reducing bacteria sludge systems. Environ. Sci. Technol. 52 (11), 6476– 6486. 10.1021/acs.est.8b00568 29757630 · DOI
  120. Zhang H. Stephanopoulos G. (2016). Co-culture engineering for microbial biosynthesis of 3-amino-benzoic acid in Escherichia coli. Biotechnol. J. 11 (7), 981– 987. 10.1002/biot.201600013 27168529 · DOI
  121. Zhang N. Ding M. Yuan Y. (2022). Current advances in biodegradation of polyolefins. Microorganisms 10 (8), 1537. 10.3390/microorganisms10081537 36013955 PMC9416408 · DOI
  122. Zhang Y. Shi K. Cui H. Han J. Wang H. Ma X. (2023). Efficient biodegradation of acetoacetanilide in hypersaline wastewater with a synthetic halotolerant bacterial consortium. J. Hazard. Mater. 441, 129926. in press. 10.1016/j.jhazmat.2022.129926 36099740 · DOI
  123. Zhou K. Qiao K. Edgar S. Stephanopoulos G. (2015). Distributing a metabolic pathway among a microbial consortium enhances production of natural products. Nat. Biotechnol. 33 (4), 377– 383. 10.1038/nbt.3095 25558867 PMC4867547 · DOI
  124. Zuroff T. R. Xiques S. B. Curtis W. R. (2013). Consortia-mediated bioprocessing of cellulose to ethanol with a symbiotic Clostridium phytofermentans/yeast co-culture. Biotechnol. Biofuels 6 (1), 59. 10.1186/1754-6834-6-59 23628342 PMC3653780 · DOI

Authors
Cao, Z., Yan, W., Ding, M., & Yuan, Y.
Affiliations
Tianjin University (CN)
Venue
Frontiers in Bioengineering and Biotechnology
Published
2022-12-06
Volume
10
Pages
1051233-1051233
ISSN
2296-4185 (ISSN-L)
OpenAlex
W4311619459
Cited by
274
References
4
Citations by year
2026: 110 · 2025: 101 · 2024: 55 · 2023: 8
FWCI
2.31
Type
journal article
Language
en
Open access
Locations
  • Frontiers in Bioengineering and Biotechnology (publishedVersion, cc-by)
  • PubMed Central (publishedVersion, cc-by)
  • PubMed (publishedVersion)
  • DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
Funders
  • National Natural Science Foundation of China (22278310)
  • National Key Research and Development Program of China (2018YFA0902100)
Topics
  • Physical Sciences › Environmental Science › Pollution › Microbial bioremediation and biosurfactants
  • Life Sciences › Agricultural and Biological Sciences › Plant Science › Enzyme-mediated dye degradation
  • Physical Sciences › Environmental Science › Environmental Engineering › Microbial Fuel Cells and Bioremediation
Keywords
microbial consortia, bioremediation, plastic degradation, petroleum hydrocarbon degradation, antibiotic degradation, azo dye degradation, synthetic biology

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