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High Molecular Weight Kininogen: A Review of the Structural Literature
Open accessPublished version of a preprint
Abstract
Kininogens are multidomain glycoproteins found in the blood of most vertebrates. High molecular weight kininogen demonstrate both carrier and co-factor activity as part of the intrinsic pathway of coagulation, leading to thrombin generation. Kininogens are the source of the vasoactive nonapeptide bradykinin. To date, attempts to crystallize kininogen have failed, and very little is known about the shape of kininogen at an atomic level. New advancements in the field of cryo-electron microscopy (cryoEM) have enabled researchers to crack the structure of proteins that has been refractory to traditional crystallography techniques. High molecular weight kininogen is a good candidate for structural investigation by cryoEM. The goal of this review is to summarize the findings of kininogen structural studies.
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![Figure 3 AlphaFold prediction of human HK. Colors of domains according to Figure 2. The structure contains a signal peptide colored brown. The figure was prepared in UCSF Chimera 1.15 based on downloaded AlPhaFold PDB coordinates (accessed date 29 October 2021) [50,51].](/paper-figures/6e75ac1e60014b88b141f89fe42dec48/high-molecular-weight-kininogen-a-review-of-the-structural-literature-figure-3.jpg)
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UCSF Chimera—A visualization system for exploratory research and analysis
Pettersen, E. F., Goddard, T. D., Huang, C. C., Couch, G. S., Greenblatt, D. M., Meng, E. C., & Ferrin, T. E. (2004) · Journal of Computational Chemistry · doi:10.1002/jcc.20084 · Cited by 45,828
Highly accurate protein structure prediction with AlphaFold
Jumper, J., Evans, R., Pritzel, A., Green, T., Figurnov, M., Ronneberger, O., Tunyasuvunakool, K., Bates, R., Žídek, A., Potapenko, A., et al. (2021) · Nature · doi:10.1038/s41586-021-03819-2 · Cited by 43,764
The Pfam Protein Families Database
Bateman, A. (2002) · Nucleic Acids Research · doi:10.1093/nar/30.1.276 · Cited by 14,000
Pfam: The protein families database in 2021
Mistry, J., Chuguransky, S., Williams, L., Qureshi, M., Salazar, G. A., Sonnhammer, E. L. L., Tosatto, S. C. E., Paladin, L., Raj, S., Richardson, L. J., et al. (2021) · Nucleic Acids Research · doi:10.1093/nar/gkaa913 · Cited by 7,452
The Pfam protein families database in 2019
El-Gebali, S., Mistry, J., Bateman, A., Eddy, S. R., Luciani, A., Potter, S. C., Qureshi, M., Richardson, L. J., Salazar, G. A., Smart, A., et al. (2019) · Nucleic Acids Research · doi:10.1093/nar/gky995 · Cited by 4,602
The Pfam protein families database
Punta, M., Coggill, P. C., Eberhardt, R. Y., Mistry, J., Tate, J., Boursnell, C., Pang, N., Forslund, K., Ceric, G., Clements, J., et al. (2012) · Nucleic Acids Research · doi:10.1093/nar/gkr1065 · Cited by 3,719
The Pfam protein families database
Bateman, A. (2004) · Nucleic Acids Research · doi:10.1093/nar/gkh121 · Cited by 3,127
The Pfam protein families database
Finn, R. D., Mistry, J., Tate, J., Coggill, P., Heger, A., Pollington, J. E., Gavin, O. L., Gunasekaran, P., Ceric, G., Forslund, K., et al. (2010) · Nucleic Acids Research · doi:10.1093/nar/gkp985 · Cited by 2,694
Pfam: clans, web tools and services
Finn, R. D. (2006) · Nucleic Acids Research · doi:10.1093/nar/gkj149 · Cited by 2,302
20 years of the SMART protein domain annotation resource
Letunic, I., & Bork, P. (2018) · Nucleic Acids Research · doi:10.1093/nar/gkx922 · Cited by 2,020
The Pfam protein families database
Finn, R. D., Tate, J., Mistry, J., Coggill, P. C., Sammut, S. J., Hotz, H.-R., Ceric, G., Forslund, K., Eddy, S. R., Sonnhammer, E. L. L., et al. (2007) · Nucleic Acids Research · doi:10.1093/nar/gkm960 · Cited by 1,845
SMART 7: recent updates to the protein domain annotation resource
Letunic, I., Doerks, T., & Bork, P. (2012) · Nucleic Acids Research · doi:10.1093/nar/gkr931 · Cited by 1,721
SMART: recent updates, new developments and status in 2015
Letunic, I., Doerks, T., & Bork, P. (2015) · Nucleic Acids Research · doi:10.1093/nar/gku949 · Cited by 1,715
de Castro, E., Sigrist, C. J. A., Gattiker, A., Bulliard, V., Langendijk-Genevaux, P. S., Gasteiger, E., Bairoch, A., & Hulo, N. (2006) · Nucleic Acids Research · doi:10.1093/nar/gkl124 · Cited by 1,686
New and continuing developments at PROSITE
Sigrist, C. J. A., de Castro, E., Cerutti, L., Cuche, B. A., Hulo, N., Bridge, A., Bougueleret, L., & Xenarios, I. (2012) · Nucleic Acids Research · doi:10.1093/nar/gks1067 · Cited by 1,562
SMART: a web-based tool for the study of genetically mobile domains
Schultz, J. (2000) · Nucleic Acids Research · doi:10.1093/nar/28.1.231 · Cited by 1,378
The Pfam Protein Families Database
Bateman, A. (2000) · Nucleic Acids Research · doi:10.1093/nar/28.1.263 · Cited by 1,256
The PROSITE database, its status in 1999
Hofmann, K., Bücher, P., Falquet, L., & Bairoch, A. (1999) · Nucleic Acids Research · doi:10.1093/nar/27.1.215 · Cited by 1,092
The PROSITE database, its status in 2002
Falquet, L. (2002) · Nucleic Acids Research · doi:10.1093/nar/30.1.235 · Cited by 1,000
Hulo, N. (2005) · Nucleic Acids Research · doi:10.1093/nar/gkj063 · Cited by 971
PROSITE: a documented database using patterns and profiles as motif descriptors
Sigrist, C. J. A. (2002) · Briefings in Bioinformatics · doi:10.1093/bib/3.3.265 · Cited by 913
Single-particle cryo-EM at atomic resolution
Nakane, T., Kotecha, A., Sente, A., McMullan, G., Masiulis, S., Brown, P. M. G. E., Grigoras, I. T., Malinauskaite, L., Malinauskas, T., Miehling, J., et al. (2020) · Nature · doi:10.1038/s41586-020-2829-0 · Cited by 868
PROSITE, a protein domain database for functional characterization and annotation
Sigrist, C. J. A., Cerutti, L., de Castro, E., Langendijk-Genevaux, P. S., Bulliard, V., Bairoch, A., & Hulo, N. (2009) · Nucleic Acids Research · doi:10.1093/nar/gkp885 · Cited by 852
Hulo, N., Bairoch, A., Bulliard, V., Cerutti, L., Cuche, B. A., de Castro, E., Lachaize, C., Langendijk-Genevaux, P. S., & Sigrist, C. J. A. (2007) · Nucleic Acids Research · doi:10.1093/nar/gkm977 · Cited by 500
Single-particle cryo-EM—How did it get here and where will it go
Cheng, Y. (2018) · Science · doi:10.1126/science.aat4346 · Cited by 448
Recent improvements to the PROSITE database
Hulo, N. (2004) · Nucleic Acids Research · doi:10.1093/nar/gkh044 · Cited by 415
Identification of prekallikrein and high-molecular-weight kininogen as a complex in human plasma.
Mandle, R. J., Colman, R. W., & Kaplan, A. P. (1976) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.73.11.4179 · Cited by 349
AlQuraishi, M. (2019) · Bioinformatics · doi:10.1093/bioinformatics/btz422 · Cited by 314
Evolution of proteins of the cystatin superfamily
Rawlings, N. D., & Barrett, A. J. (1990) · Journal of Molecular Evolution · doi:10.1007/bf02102453 · Cited by 298
Association of factor XI and high molecular weight kininogen in human plasma.
Thompson, R. E., Mandle, R. J., & Kaplan, A. P. (1977) · Journal of Clinical Investigation · doi:10.1172/jci108898 · Cited by 283
Kerbiriou, D., & Griffin, J. H. (1979) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(19)86421-9 · Cited by 223
Activation of the Human Contact System on Neutrophil Extracellular Traps
Oehmcke-Hecht, S., Mörgelin, M., & Herwald, H. (2009) · Journal of Innate Immunity · doi:10.1159/000203700 · Cited by 209
An update on factor XI structure and function
Mohammed, B. M., Matafonov, A., Ivanov, I. S., Sun, M.-F., Cheng, Q., Dickeson, S. K., Li, C., Sun, D. A., Verhamme, I. M., Emsley, J., et al. (2017) · Thrombosis Research · doi:10.1016/j.thromres.2017.10.008 · Cited by 167
Thompson, R. E., Mandle, R. J., & Kaplan, A. P. (1978) · The Journal of Experimental Medicine · doi:10.1084/jem.147.2.488 · Cited by 142
Pfam 10 years on: 10 000 families and still growing
Sammut, S., Finn, R. D., & Bateman, A. G. (2008) · Briefings in Bioinformatics · doi:10.1093/bib/bbn010 · Cited by 129
Phylogenomic analysis of the cystatin superfamily in eukaryotes and prokaryotes
Kordiš, D., & Türk, V. (2009) · BMC Evolutionary Biology · doi:10.1186/1471-2148-9-266 · Cited by 127
Thompson, R. E., Mandle, R. J., & Kaplan, A. P. (1979) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.76.10.4862 · Cited by 123
Evolution of the contact phase of vertebrate blood coagulation
PONCZEK, M. B., GAILANI, D., & DOOLITTLE, R. F. (2008) · Journal of Thrombosis and Haemostasis · doi:10.1111/j.1538-7836.2008.03143.x · Cited by 115
Self-citationCryo-EM: beyond the microscope
Earl, L. A., Falconieri, V., Milne, J. L. S., & Subramaniam, S. (2017) · Current Opinion in Structural Biology · doi:10.1016/j.sbi.2017.06.002 · Cited by 111
Kininogens: More than cysteine protease inhibitors and kinin precursors
Lalmanach, G., Naudin, C., Lecaille, F., & Fritz, H. (2010) · Biochimie · doi:10.1016/j.biochi.2010.03.011 · Cited by 110
Identifying Protein Domains with the Pfam Database
Coggill, P. C., Finn, R. D., & Bateman, A. G. (2008) · Current Protocols in Bioinformatics · doi:10.1002/0471250953.bi0205s23 · Cited by 98
ProRule: a new database containing functional and structural information on PROSITE profiles
Sigrist, C. J. A., de Castro, E., Langendijk-Genevaux, P. S., Saux, V. L., Bairoch, A., & Hulo, N. (2005) · Computer applications in the biosciences · doi:10.1093/bioinformatics/bti614 · Cited by 91
Kerbiriou, D., Bouma, B. N., & Griffin, J. H. (1980) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(19)85618-1 · Cited by 81
Weisel, J. W., Nagaswami, C., Woodhead, J. L., Cadena, R. A. D., Page, J. D., & Colman, R. W. (1994) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(17)36995-8 · Cited by 78
What does AlphaFold mean for drug discovery?
Mullard, A. (2021) · Nature Reviews Drug Discovery · doi:10.1038/d41573-021-00161-0 · Cited by 76
Kokoye, Y., Ivanov, I. S., Cheng, Q., Matafonov, A., Dickeson, S. K., Mason, S. D., Sexton, D. J., Renné, T., McCrae, K. R., Feener, E. P., et al. (2016) · Thrombosis Research · doi:10.1016/j.thromres.2016.02.020 · Cited by 68
The evolution of factor XI and the kallikrein-kinin system
Ponczek, M. B., Шаманаев, А. Ю., LaPlace, A., Dickeson, S. K., Srivastava, P., Sun, M.-F., Gruber, A., Kastrup, C. J., Emsley, J., & Gailani, D. (2020) · Blood Advances · doi:10.1182/bloodadvances.2020002456 · Cited by 55
Self-citationCryogenic Transmission Electron Microscopy: Aqueous Suspensions of Nanoscale Objects
Burrows, N. D., & Penn, R. L. (2013) · Microscopy and Microanalysis · doi:10.1017/s1431927613013354 · Cited by 49
Clotting factors: Clinical biochemistry and their roles as plasma enzymes
Winter, W. E., Greene, D. N., Beal, S. G., Isom, J., Manning, H. M., Wilkerson, G., & Harris, N. (2020) · Advances in clinical chemistry · doi:10.1016/bs.acc.2019.07.008 · Cited by 49
Herwald, H., Mörgelin, M., Svensson, H. G., & Sjöbring, U. (2001) · European Journal of Biochemistry · doi:10.1046/j.1432-1033.2001.01888.x · Cited by 44
Could AlphaFold revolutionize chemical therapeutics?
Tong, A., Burch, J. D., McKay, D. B., Bustamante, C., Crackower, M. A., & Wu, H. (2021) · Nature Structural & Molecular Biology · doi:10.1038/s41594-021-00670-x · Cited by 43
High molecular weight kininogen-binding site of prekallikrein probed by monoclonal antibodies.
Hock, J., Vogel, R., Linke, R., & Müller‐Esterl, W. (1990) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(19)38500-x · Cited by 33
Phylogenetic analysis of vertebrate kininogen genes
Zhou, L., Li‐Ling, J., Huang, H., Ma, F., & Li, Q. (2007) · Genomics · doi:10.1016/j.ygeno.2007.10.007 · Cited by 26
pfsearchV3: a code acceleration and heuristic to search PROSITE profiles
Schuepbach, T., Pagni, M., Bridge, A. J., Bougueleret, L., Xénarios, I., & Cerutti, L. (2013) · Bioinformatics · doi:10.1093/bioinformatics/btt129 · Cited by 22
Hand, E. (2020) · Science · doi:10.1126/science.367.6476.354 · Cited by 19
The sialic acid content and isoelectric point of human kininogen
Londesborough, J., & Hamberg, U. (1975) · Biochemical Journal · doi:10.1042/bj1450401 · Cited by 16
Research works printed but not linked: 1
- Waterhouse, 2004, UCSF Chimera—A visualization system for exploratory research and analysis, J. Biol. Chem., 25, 1605
Metadata
- Authors
- Ponczek, M. B.
- Affiliations
- Department of General Biochemistry, Faculty of Biology and Environmental Protection, University of Lodz, Pomorska 141/143, 90-236 Lodz, Poland
- ORCID
- Ponczek, Michał B.
- Venue
- International Journal of Molecular Sciences
- Publisher
- MDPI AG
- Published
- 2021-12-13
- Volume
- 22
- Issue
- 24
- Pages
- 13370
- ISSN
- 1422-0067 (ISSN-L)
- PMC
- PMC8706920
- OpenAlex
- W4200368767
- Cited by
- 45
- References
- 56
- Citations by year
- 2026: 11 · 2025: 10 · 2024: 3 · 2023: 15 · 2022: 6
- FWCI
- 0.85
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Licence
- Locations
- International Journal of Molecular Sciences (publishedVersion, cc-by)
- Preprints.org (acceptedVersion, cc-by)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
- Funders
- Saint Louis University
- National Institutes of Health
- University of California, San Francisco
- National Center for Research Resources (P41RR001081)
- Topics
- Health Sciences › Medicine › Hematology › Coagulation, Bradykinin, Polyphosphates, and Angioedema
- Life Sciences › Immunology and Microbiology › Immunology › Complement system in diseases
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Structural Biology › Enzyme Structure and Function
- Keywords
- high molecular weight kininogen, intrinsic coagulation pathway, thrombin generation, bradykinin, protein structure, cryo-electron microscopy
- MeSH terms
- Animals, Bradykinin, Humans, Kallikreins, Kininogens, Structure-Activity Relationship, Kininogen, High-Molecular-Weight, Cryoelectron Microscopy
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