The Iconic Philippine Coral Reef at Steinhart Aquarium: The Husbandry, Welfare, Behavior, and Veterinary Care Considerations of a Large Multi-Taxa Living Coral Reef System
Open accessAbstract
In 2008, Steinhart Aquarium at the California Academy of Sciences in San Francisco, CA, USA, unveiled a brand new facility with the 212,000 gallon Philippine Coral Reef habitat as its iconic centerpiece. Designing and managing a system that consists of a living reef this large, with associated invertebrates and teleosts, has been a challenge for the aquarium’s husbandry and veterinary teams. Establishing appropriate lighting, water quality, and flow has required a scientific approach and resulting adjustments to the original habitat design. The medical management of reef species has required an in-habitat approach as well as trial-and-error therapeutics. Determining the criteria for assessing the welfare of corals and other tank inhabitants has been a shifting process that has heavily utilized photography-tracked changes and other quantitative parameters as baselines. This report details the successes and limitations of establishing the environmental and veterinary management of this mesocosm. The consideration of interplay between species is discussed, and recommendations for monitoring welfare both on an individual and tank level are made. Making adjustments for the benefit of the exhibit and its animals is key for the unique aquarium displays that comprise captive coral reef systems.
AI snapshot
Written from the paper’s full text.
TL;DR
This paper is a descriptive report of the husbandry, veterinary, welfare, and behavioral management of Steinhart Aquarium’s 212,000-gallon Philippine Coral Reef since 2008. It documents major system changes—synthetic seawater, artificial lighting, phosphate control—and argues that flexible, data-driven care and welfare assessments are key for large mixed-taxa reef exhibits.
Key findings
- The Philippine Coral Reef is 25 feet (7.6 m) deep and holds 212,000 gallons (802,507 L; 800 m³), with over 100 invertebrate genera including 84 coral genera, and over 700 fish representing 53 genera; Table 1 lists 65 hexacorallian and 19 octocorallian genera.
- Natural seawater was replaced with synthetic seawater two years after opening because incoming water had variable quality, low salinity, and high orthophosphate; the aquarium developed a tailored salt formulation, ran a 30-day bioassay, and targets parameters such as salinity 33–36 ppt, temperature 76–79 °F (24–26 °C), pH 8.0–8.4, and PO₄³⁻ <0.15 mg/L.
- Natural sunlight was insufficient for coral growth, so the system moved to artificial lighting with seventy-six 1 kW metal halide fixtures, a PAR target of 200–1000 µE·m⁻²·s⁻¹, and a translucent film cutting 80% of skylight light; LED replacement is ongoing.
- Brown Jelly Syndrome outbreaks occurred; after automated testing found phosphate up to ten times higher than previously reported, PO₄³⁻ removal was increased to 0.2 mg/L targeting <0.15 mg/L, and disease incidence declined significantly. One coral species, *Echinopora*, was almost extirpated in a 2020 outbreak but has since been reestablished.
Methods
- Descriptive institutional case report/overview of one large captive reef system at Steinhart Aquarium, California Academy of Sciences, from its 2008 opening onward.
- Draws on husbandry and water-quality records, salt formulation and bioassay work, PAR/light measurements, veterinary examinations and treatments, welfare assessments, underwater photography, and behavioral observations.
- No new data were created or analyzed (Data availability); the paper synthesizes operational experience and recommends practices for coral reef habitats.
Limitations
- Stated: causes of many coral ailments in closed systems remain a “black box”; aquatic invertebrate and fish medicine lacks well-established drug pharmacokinetics, mechanisms of action, and dosing; detailed veterinary diagnostics are beyond the paper’s scope; no new data were created or analyzed.
- Evident: this is a single-institution, descriptive report without controlled comparisons or formal hypothesis testing, so many outcomes are observational and cannot isolate single causal factors.
- Evident: several quantitative values are operational targets or spot measurements rather than systematically reported long-term outcomes, limiting generalizability to other aquariums.
Model-written summary. Check it against the paper before relying on it.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
4 of 29 cited sources checked · 0 supported · 0 flagged · accuracy not yet measured
- Findingcitation
Intermittent outbreaks of acoel flatworms, such as Amakusaplana acroporae, are addressed with freshwater flushes during dives.
“Intermittent outbreaks of acoel flatworms, such as the recently described species Amakusaplana acroporae, are addressed with freshwater flushes during dives [13].”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [13] Hume, 2014, The corallivorous flatworm Amakusaplana acroporae: An invasive species threat to coral reefs?, Coral Reefs source
The Introduction identifies Amakusaplana acroporae as a coral-infesting flatworm, but distinguishes it from the acoel Waminoa. The Culture and aquarium experiments section says researchers dislodged worms with a seawater jet; it does not report intermittent outbreaks or freshwater flushes during dives. Page numbers are unavailable in our copy. (LLM, conf=0.85)
Experimental — accuracy not yet measured
- Findingcitation
Coral colonies diagnosed via skin scrape with BJS have benefited from a treatment regimen of a coral-safe paste mixed with amoxicillin applied to affected tissues 1-3 times a week during dives.
“coral colonies diagnosed via skin scrape with Brown Jelly Syndrome (BJS) have benefited from a treatment regimen involving a coral-safe paste (CoralCure Ointment Base2B, Ocean Alchemists LLC, Largo, FL, USA) mixed with amoxicillin (Sandoz Inc., Princeton, NJ, USA), which is applied to affected tissues 1-3 times a week during dives (Figure 5a) [12].”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [12] Eaton, K.R., Clark, A.S., Curtis, K., Favero, M., Hanna Holloway, N., Ewen, K., and Muller, E.M. (2022). A highly effective therapeutic ointment for treating corals with black band disease. PLoS ONE, 17. source
The Materials & methods section describes testing Base2B mixed with amoxicillin on corals with black band disease (BBD), so the treatment ingredients match. It does not describe skin-scrape diagnosis of Brown Jelly Syndrome or application 1–3 times a week. The Results (July 2020, October 2020 treatments) found no significant benefit from the antibiotic treatment over controls, and the Discussion says it did not work in this study. Page numbers were not available in our copy. (LLM, conf=0.88)
Experimental — accuracy not yet measured
- Findingown data
Within the first year of operation, it became evident that the climate of San Francisco was not ideal for natural light-based coral growth.
“Within the first year of operation, it quickly became evident that the climate of San Francisco was not ideal for natural light-based coral growth.”
Quote in the paperSubstantial claim - Findingcitation
The final saltwater formulation for the PCR is a close approximation of the concentration of elements found in naturally occurring Philippine coral reefs.
“When saltwater is added to the PCR specifically, trace elements and mineral supplements such as manganese (II) citrate, iron (II) citrate, and potassium iodide are dosed directly into the tank in order to achieve a final saltwater formulation that is a close approximation of the concentration of elements found in naturally occurring Philippine coral reefs (Table 3) [3][4][5].”
Quote in the paperNot a substantial claim0 of 3 sources checked- cites [3] Patel, L., Wandell, M., Bautista, A., and Shepherd, B. (2023, November 19). Techniques for manufacturing artificial seawater at the Steinhart Aquarium. In Aquality: Water Quality and Water Treatment in Zoos and Aquariums. Available online: https://sites.google.com/view/aqualitywebsite/manual?authuser=0.
Not checked in the free run.
- cites [4] MBARI (2023, July 18). Periodic Table of Elements in the Ocean. Available online: www.mbari.org/know-your-ocean/periodic-table-of-elements-in-the-ocean/.
Not checked in the free run.
- cites [5] Spotte, S. (1973). Marine Aquarium Keeping: The Science, Animals, and Art, John Wiley & Sons. [1st ed.].
Not checked in the free run.
- Findingnone given
Colonies with visible bleaching that were relocated to other parts of the PCR improved with no further interference.
“For example, colonies with visible bleaching have been relocated to other parts of the PCR and have improved with no further interference.”
Quote in the paperNot a substantial claim
- Findingreasoning
It is not always possible to hospitalize ailing PCR fish or invertebrates (some fish cannot be caught, some coral colonies are too large, some anemones are too established to move).
“It is not always possible to hospitalize ailing PCR fish or invertebrates-some fish cannot be caught, some coral colonies are too large, some anemones are too established to move, etc.”
Quote in the paperSubstantial claim - Findingnone given
Multifocal outbreaks of Brown Jelly Syndrome have been noted in the PCR.
“Multifocal outbreaks of BJS have been noted in the PCR.”
Quote in the paperNot a substantial claim - Findingown data
After modifying water parameter testing from manual to automated in late 2022, phosphate values in the PCR were discovered to be much higher than previously reported, sometimes up to ten times higher.
“discovered that phosphate values in the PCR were much higher than previously reported, sometimes up to ten times higher.”
Quote in the paperSubstantial claim - Findingnone given
Steinhart Aquarium has not allowed diver feedings during scheduled dive shows since the PCR was debuted in 2008.
“Steinhart Aquarium has not allowed diver feedings during scheduled dive shows since the PCR was debuted in 2008.”
Quote in the paperNot a substantial claim - Findingnone given
Orthophosphate levels have historically been high in the PCR, sometimes reaching 0.8 mg/L PO4 3-.
“Orthophosphate levels have historically been high in the PCR, sometimes reaching 0.8 mg/L PO 4 3-.”
Quote in the paperSubstantial claim - Findingcitation
A layer of specific algal hyphae has been accepted as an appropriate finding for corals from the PCR habitat, as it is seen repeatedly in animals with no evidence of gross nor histopathological abnormalities.
“For example, although initially thought to be an overgrowth of microorganisms and a possible cause of malaise in colonies from the PCR, a layer of specific algal hyphae has now been accepted as an appropriate finding for corals from this habitat, as it is seen repeatedly in animals with no evidence of gross nor histopathological abnormalities [10].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [10] Krol, 2023, Milbemycin oxime (Interceptor) treatment of pycnogonid sea spider infestation in three species of corals, J. Zoo Wildl. Med. source
- Findingnone given
Contamination of salt bags with calcium phosphate, a non-clumping agent for table salt, presented as spikes in the saltwater PO4 3- as high as 1.0 mg/L.
“The contamination of salt bags with calcium phosphate, a non-clumping agent for table salt, presented as spikes in the saltwater PO 4 3-as high as 1.0 mg/L.”
Quote in the paperNot a substantial claim - Findingown data
Measurements of light intensity and photosynthetically active radiation (PAR) found inconsistencies throughout the PCR due to wide variation in light intensity throughout the day and year.
“measurements in both light intensity and photosynthetically active radiation (PAR) using sensors and data loggers (LI-193SA spherical quantum sensor and Li-1400 datalogger, both from Li-Cor Inc., Lincoln, NE, USA) found inconsistencies throughout the PCR due to wide variation in light intensity throughout the day and year, as the number of sunny days and angle of the sun changed.”
Quote in the paperSubstantial claim - Findingnone given
The control of Phestilla subodiosus, nudibranchs that feed exclusively on Montipora folliosa coral, was achieved via the addition of their predator, yellow-brown wrasse (Thalassoma lutescens).
“The control of Phestilla subodiosus, nudibranchs that feed exclusively on Montipora folliosa coral, was achieved via the addition of their predator, yellow-brown wrasse (Thalassoma lutescens).”
Quote in the paperNot a substantial claim - Findingreasoning
The flow from the standard aquarium loop was insufficient for living corals given the size of the PCR.
“Given the size of the PCR, the flow of the water from the standard aquarium loop was insufficient for living corals.”
Quote in the paperSubstantial claim - Premisecitation
Corals are sessile organisms that rely on water flow to bring them dissolved nutrients and gasses and carry away by-products of digestion and respiration.
“Corals are sessile organisms that rely on water flow to bring them dissolved nutrients and gasses and carry away by-products of digestion and respiration [1,2].”
Quote in the paperSubstantial claim0 of 2 sources checked- cites [1] Lewbart, G.A. (2022). Invertebrate Medicine, Wiley Blackwell. [3rd ed.]. source
- cites [2] Delbeek, J.C., and Sprung, J.F. (2005). The Reef Aquarium: Science, Art and Technology, Ricordea Publishing. [1st ed.].
Not checked in the free run.
- Interpretationown data
Husbandry parameters alone can facilitate improvement in sick corals.
“Often, husbandry parameters alone can facilitate improvement in sick corals.”
Quote in the paperNot a substantial claim- The authors state this as an assumption: Husbandry factors caused the improvement in relocated bleached coral colonies, because their statuses improved with only this change.
- Study design and conductreasoning
Repeated photographs of areas of pallor on coral colonies, along with measurements of the widths of these lesions, allow the Steinhart team to determine whether the therapeutics they have used have been effective.
“For example, repeated photographs of areas of pallor on coral colonies, along with measurements of the widths of these lesions, allow the Steinhart team to determine whether the therapeutics they have used have been effective (Figure 2).”
Quote in the paperNot a substantial claim - Premisenone given
Successful maintenance of captive coral reefs relies heavily on the physical parameters of water and light.
“The successful maintenance of captive coral reefs relies heavily on the physical parameters surrounding them, namely, water and light.”
Quote in the paperSubstantial claim - Interpretationreasoning
A reliance on artificial light of suitable intensity and color spectrum was needed for the PCR.
“Despite the original building design, a reliance on artificial light of a suitable intensity and color spectrum would be needed.”
Quote in the paperSubstantial claim - Interpretationreasoning
Seventy-six 1 kW metal halide fixtures were needed to provide the appropriate spectrum and intensity for the PCR corals to thrive with minimal energy expenditure.
“Ultimately, seventy-six 1 kW metal halide fixtures would be needed to provide the appropriate spectrum and intensity that the PCR corals would need to thrive but with minimal energy expenditure (Figure 3).”
Quote in the paperSubstantial claim - Premisecitation
The presence of the Philaster ciliate has been associated with Brown Jelly Syndrome.
“the presence of the Philaster ciliate has been associated with the condition [1,2].”
Quote in the paperNot a substantial claim0 of 2 sources checked- cites [1] Lewbart, G.A. (2022). Invertebrate Medicine, Wiley Blackwell. [3rd ed.]. source
- cites [2] Delbeek, J.C., and Sprung, J.F. (2005). The Reef Aquarium: Science, Art and Technology, Ricordea Publishing. [1st ed.].
Not checked in the free run.
- Premisecitation
Light intensity should be between 150 and 1000 μE•m-2•s-1 for optimum coral health and growth.
“Light intensity should be between 150 and 1000 µE•m -2 •s -1 for optimum coral health and growth [2];”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [2] Delbeek, J.C., and Sprung, J.F. (2005). The Reef Aquarium: Science, Art and Technology, Ricordea Publishing. [1st ed.].
Not checked in the free run.
- Premisecitation
The major consideration when planning a mixed-species exhibit such as the PCR is the compatibility of the species.
“As with mixed-species terrestrial habitats in zoos, the major consideration when planning a mixed-species exhibit such as the PCR is the compatibility of the species [8].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [8] Fowler, M., and Miller, R.E. (2012). Fowler’s Zoo and Wild Animal Medicine, Elsevier Saunders. [7th ed.].
Not checked in the free run.
- Premisecitation
A major negative aspect of a mixed-species exhibit is that some species-specific behaviors may be detrimental to the other animals in the habitat.
“A major negative aspect of a mixed-species exhibit is that, despite everyone's best efforts, some species-specific behaviors may be detrimental to the other animals in the habitat [8].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [8] Fowler, M., and Miller, R.E. (2012). Fowler’s Zoo and Wild Animal Medicine, Elsevier Saunders. [7th ed.].
Not checked in the free run.
- May combine two claims. 29
- Classified as probably not a substantial claim. 33
- The quote only partly states this claim. 1
May combine two claims.
PremisecitationThere is potential for negative behaviors to develop from animals when diver feeds occur, as fish will quickly associate divers with food and swarm them as soon as they enter the water.
“there is potential for negative behaviors to develop from animals when these types of feeds occur, as fish will quickly associate divers with food and swarm them as soon as they enter the water [16].”
Quote in the paperSubstantial claim1 of 1 sources checked- cites [16] Prinz, 2020, To feed or not to feed? Coral reef fish responses to artificial feeding and stakeholder perceptions in the Aitutaki Lagoo, Cook Islands, Front. Mar. Sci. source
The ‘Carnivorous and Omnivorous Fish Were Consistently Attracted to Bread’ section reports that bread feeding congregated predatory fish in a feeding frenzy and describes some species as habituated to bread. It does not establish that fish associate divers themselves with food or swarm them as soon as they enter the water; the reported congregation occurred around the bread during feeding. (LLM, conf=0.84)
Experimental — accuracy not yet measured
Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
PremisecitationCorals have a rich endolithic community, and together, they are known as the coral holobiont.
“Corals have a rich endolithic community, and together, they are known as the coral holobiont [1,10,11].”
- Also stated in: § 3. Results and Discussion · plain
“Corals have a rich endolithic community, and together, they are known as the coral holobiont [1,10,11].”
Quote in the paperNot a substantial claim1 of 3 sources checked- cites [1] Lewbart, G.A. (2022). Invertebrate Medicine, Wiley Blackwell. [3rd ed.]. source
- cites [10] Krol, 2023, Milbemycin oxime (Interceptor) treatment of pycnogonid sea spider infestation in three species of corals, J. Zoo Wildl. Med. source
- cites [11] Rowher, 2002, Diversity and distribution of coral-associated bacteria, Mar. Ecol. Prog. Ser. source
Figure 5 in “Coral microbiotas and disease” describes the coral holobiont as the coral animal, zooxanthellae, and prokaryotes, and says it also includes endolithic algae. The Introduction describes diverse coral-associated prokaryotes, but the cited passages do not establish that corals have a rich specifically endolithic community. (LLM, conf=0.84)
Experimental — accuracy not yet measured
- Also stated in: § 3. Results and Discussion · plain
Probably not a substantial claim: may not pass S3 (load-bearing).
Findingnone givenThe City and County of San Francisco makes seasonal changes to the sources for their primary water supply, with seasonal shifts in alkalinity from as low as 0.25-0.3 mEq/L in summer to as high as 1.0-1.2 mEq/L in winter.
“The City and County of San Francisco makes seasonal changes to the sources for their primary water supply, with seasonal shifts in alkalinity from as low as 0.25-0.3mEq/L in the summer to as high as 1.0-1.2mEq/L in the winter.”
Quote in the paperNot a substantial claimMay combine two claims.
FindingreasoningSigns of ailment such as bleaching were seen in corals throughout the tank, and focal death of corals occurred in areas of the PCR where the sun entered the circular skylights.
“Signs of ailment such as bleaching (the expulsion of the symbiotic algae) was seen in corals throughout the tank, and focal death of corals occurred in areas of the PCR where the sun entered the circular skylights.”
Quote in the paperSubstantial claimMay combine two claims.
Findingnone givenSteinhart Aquarium has had success treating its aquatic invertebrates with aggressive therapy, such as daily antibiotic baths, and with simple nutraceutical approaches, such as Revive Coral Cleaner or Reef Primer dips for 10 min.
“Steinhart Aquarium has had success treating its aquatic invertebrates both with aggressive therapy, such as via daily antibiotic baths, but also with simple nutraceutical approaches, such as Revive Coral Cleaner (Two Little Fishies Inc., Miami Gardens, FL, U.S.A.) or Reef Primer (Polylab, Montreal, QC, Canada) dips for 10 min.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Findingnone givenAbrupt changes in animal behavior can occur.
“Abrupt changes in animal behavior can occur.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing), S4 (based).
Findingnone givenInterplay between husbandry, veterinary, behavioral, and welfare considerations occurs daily for the PCR.
“Interplay between husbandry, veterinary, behavioral, and welfare considerations occurs daily for the PCR.”
Quote in the paperNot a substantial claimMay combine two claims.
Findingown dataIn late 2022, a new BJS outbreak occurred in the PCR, and previous methods of interference proved unsuccessful.
“in late 2022, with a new BJS outbreak in the PCR and previous methods of interference proving unsuccessful”
Quote in the paperSubstantial claimMay combine two claims.
Findingnone givenThe quality of the incoming natural seawater was variable, with low salinity and high orthophosphate (PO4 3-) concentrations.
“However, the quality of the incoming water was variable, with low salinity and high orthophosphate (PO 4 3-) concentrations.”
Quote in the paperSubstantial claimMay combine two claims.
Findingnone givenOne species of coral, Echinopora, was almost extirpated from the PCR habitat due to BJS during a 2020 outbreak, but this species has since been reestablished.
“One species of coral-Echinopora-was almost extirpated from the habitat due to BJS during a 2020 outbreak, but this species has since been reestablished.”
Quote in the paperNot a substantial claimThe quote only partly states this claim.
Findingown dataAfter increasing the rate of PO4 3- removal to bring levels to 0.2 mg/L (targeting <0.15 mg/L), the incidence of disease in the PCR declined significantly.
“After this change was made, the incidence of disease declined significantly.”
Quote in the paperSubstantial claimProbably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
Findingnone givenThe Philippine Coral Reef habitat contains over 100 genera of invertebrates, including 84 genera of corals, and over 700 fish representing 53 genera.
“The habitat boasts over 100 genera of invertebrates, including 84 genera of corals.There are also over 700 fish representing 53 genera.”
Quote in the paperNot a substantial claimMay combine two claims.
Findingown dataA 30-day bioassay of the new saltwater with an existing coral reef exhibit showed no toxic contaminants, no deficiency in desired ions, no interference from trace elements, and the living coral reef community thrived.
“Lastly, once a salt formulation was chosen and the chemicals sourced, a basic bioassay was conducted over 30 days utilizing the new saltwater and an existing coral reef exhibit.This way, the aquarium was able to ensure that there were no toxic contaminants, no deficiency in desired ions, and no interference from trace elements-and the living coral reef community thrived.”
Quote in the paperSubstantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Findingnone givenThe naturally planktivorous pyramid butterflyfish (Hemitaurichthys polylepis) in the PCR suddenly began to eat soft corals after 8 years in the system.
“For example, the naturally planktivorous pyramid butterflyfish (Hemitaurichthys polylepis) in the PCR suddenly began to eat soft corals after 8 years in the system.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Findingnone givenFor nearly 100 years, Steinhart Aquarium relied on natural seawater from a sub-sand Ranney collector at Ocean Beach in San Francisco.
“For nearly 100 years, Steinhart Aquarium relied on a source of natural seawater from a sub-sand Ranney collector located at the nearby Ocean Beach in San Francisco.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
Findingnone givenThe Philippine Coral Reef tank is 25 feet (7.6 m) deep and contains 212,000 gallons (802,507 L; 800 m3) of seawater.
“The tank is 25 feet (7.6 m) deep and contains 212,000 gallons (802,507 L; 800 m 3 ) of seawater.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing), S4 (based). May combine two claims.
Findingnone givenFor corals, an increasing surface area of bleaching is a useful welfare descriptor, while a decreasing body condition score is not.
“For example, a decreasing body condition score is not a useful descriptor for an ailing coral, while an increasing surface area of bleaching is.”
Quote in the paperNot a substantial claimMay combine two claims.
FindingcitationThe PCR houses 22 species of surgeonfish chosen specifically for the functional trophic groups they fall into, each of which make critical contributions to ecosystem processes through macroalgal removal, affecting sediment dynamics, and other functions.
“For example, the PCR houses 22 species of surgeonfish (Family: Acanthuridae), which were chosen specifically for the functional trophic groups they fall into, each of which make critical contributions to the ecosystem processes through macroalgal removal, affecting sediment dynamics, and other functions [9].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [9] Tebbett, 2022, The functional roles of surgeonfishes on coral reefs: Past, present and future, Rev. Fish Biol. Fish. source
Probably not a substantial claim: may not pass S3 (load-bearing).
Findingnone givenWhen welfare assessments indicate criteria that need improvement, processes are in place to address these.
“When welfare assessments indicate criteria that need improvement, processes are in place to address these.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Findingnone givenCanary wrasse (Halichoeres chrysus) are utilized to depopulate dwarf brittlestars (Amphipholis spp.).
“Canary wrasse (Halichoeres chrysus) are utilized to depopulate dwarf brittlestars (Amphipholis spp.).”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Findingnone givenAs the aquarium adds fauna to the collection in the PCR, the veterinary team has become even more involved in the health management of this habitat.
“As the aquarium adds fauna to the collection in the PCR, the veterinary team has become even more involved in the health management of this habitat.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Findingnone givenIn cases of worsening welfare scores, often due to geriatric status or chronic medical conditions, animals are assessed more frequently via a separate Quality of Life Assessment.
“In cases of worsening welfare scores, often due to geriatric status or chronic medical conditions, animals are assessed more frequently via a separate Quality of Life Assessment.”
Quote in the paperNot a substantial claimMay combine two claims.
Findingown dataIn the PCR, BJS outbreaks sometimes resolved spontaneously in some areas, but new outbreaks continued.
“although resolution would spontaneously occur in some areas, new outbreaks of BJS continued.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
Findingnone givenThe PCR houses several species of eye-catching schooling fish chosen not only for beauty or to mimic a living reef ecosystem but also because they are of appropriate size and number to perform schooling behavior in this particular size tank.
“The PCR also houses several species of eye-catching schooling fish (e.g., blue and gold fusiliers, Caesio caerulaurea), which have been chosen not only for their beauty or to further mimic a living reef ecosystem but also because they are of appropriate size and number to perform this schooling behavior in this particular size tank.”
Quote in the paperNot a substantial claimMay combine two claims.
Findingnone givenThe light spectrum varies by location and depth in the PCR, and some coral colonies have been seen to thrive at the extremes of PAR measurements.
“However, the spectrum varies based on location and depth in the tank, and some coral colonies have been seen to thrive at the extremes of measurements.”
Quote in the paperNot a substantial claimMay combine two claims.
Findingnone givenAfter a translucent light film was applied to cover the building skylights that directly impacted the PCR, cutting out 80% of the light, improvement in coral appearance was seen shortly thereafter.
“Lastly, a translucent light film was applied to cover the building skylights that directly impacted the PCR, cutting out 80% of the light.Improvement in coral appearance was seen shortly thereafter, and over the next few years, the vertical glass walls on the west side of the habitat were also covered with this material.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
Findingnone givenThe PCR tank has a history of pycnogonid sea spider presence.
“The PCR tank has a history of pycnogonid sea spider presence”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
FindingcitationThere has been a history of fish causing damage to fingers in aquaria, including in the old Steinhart Aquarium facility.
“there has been a history of this in aquaria, including in the old Steinhart Aquarium facility (B.Shepherd, pers.comm.).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites B.Shepherd, pers.comm.
Couldn’t be matched to a paper in Crossref, so it can’t be checked.
Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
PremisecitationAquatic animal medicine, specifically that of invertebrates and fish, is in its infancy; medical resources are limited, and knowledge of drug pharmacokinetics, mechanisms of action, and dosing are not well established.
“Compared to companion animal medicine, aquatic animal medicine-specifically that of invertebrates and fish-is in its infancy.Medical resources for these types of animals are limited, and although therapeutic options are available, knowledge of drug pharmacokinetics, mechanisms of action, and dosing are still not well established [1,6].”
Quote in the paperNot a substantial claim0 of 2 sources checkedProbably not a substantial claim: may not pass S3 (load-bearing).
Study design and conductcitationSteinhart Aquarium's welfare program is structured in accordance with the AZA Animal Welfare Committee definition of welfare.
“The welfare program at the aquarium is structured in accordance with the AZA Animal Welfare Committee definition of welfare [7].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [7] AZA (2023, July 18). Animal Welfare Committee. Available online: www.aza.org/animal_welfare_committee.
Not checked in the free run.
Probably not a substantial claim: may not pass S3 (load-bearing).
Study design and conductnone givenAll exhibit inhabitants undergo standardized animal welfare assessments overseen by a team of biologists, curators, and veterinarians at the aquarium.
“All exhibit inhabitants undergo standardized animal welfare assessments that are overseen by a team of biologists, curators, and veterinarians at the aquarium.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationBacterial, fungal, or ciliate overgrowth as a cause of coral illness can be diagnosed via a simple skin scrape of tissue and microscopic analysis.
“Bacterial, fungal, or ciliate overgrowth as a cause of coral illness can be diagnosed via a simple skin scrape of tissue and microscopic analysis [1,10].”
- Also stated in: § 3. Results and Discussion · plain
“Bacterial, fungal, or ciliate overgrowth as a cause of coral illness can be diagnosed via a simple skin scrape of tissue and microscopic analysis [1,10].”
Quote in the paperNot a substantial claim0 of 2 sources checked- Also stated in: § 3. Results and Discussion · plain
May combine two claims.
InterpretationreasoningFor animals that cannot be hospitalized, medical interference is limited but on-exhibit treatment can still be pursued.
“For these animals, medical interference is limited but on-exhibit treatment can still be pursued.”
Quote in the paperSubstantial claimProbably not a substantial claim: may not pass S2 (checkable), S3 (load-bearing).
InterpretationreasoningOften, several changes must be instituted to arrest a suspected disease process.
“Often, several changes must be instituted to arrest a suspected disease process.”
Quote in the paperNot a substantial claimMay combine two claims.
PremisecitationIll-animal biopsies can identify pathogens causing malaise, while shifts from the normal endolithic makeup can be indicative of the health of the colony, sometimes irrespective of gross appearance.
“Ill-animal biopsies can identify pathogens causing malaise, while shifts from the normal endolithic makeup can be indicative of the health of the colony, sometimes irrespective of gross appearance [10].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [10] Krol, 2023, Milbemycin oxime (Interceptor) treatment of pycnogonid sea spider infestation in three species of corals, J. Zoo Wildl. Med. source
Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
Study design and conductnone givenPAR is measured at varying intervals throughout the year, with the frequency of measurement increased if major husbandry changes or poor animal health are noted.
“PAR is measured at varying intervals throughout the year, with the frequency of measurement being increased if major husbandry changes, such as lighting alterations, are made or poor animal health is noted.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationCoral reefs support more species per unit area than any other marine environment.
“While this biodiversity varies globally, it has been estimated that coral reefs support more species per unit area than any other marine environment [2].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [2] Delbeek, J.C., and Sprung, J.F. (2005). The Reef Aquarium: Science, Art and Technology, Ricordea Publishing. [1st ed.].
Not checked in the free run.
Probably not a substantial claim: may not pass S3 (load-bearing), S4 (based). May combine two claims.
Interpretationnone givenAbiotic factors such as lighting, water flow, and water chemistry can act synergistically, and changes to more than one need to be made in order to cause positive change.
“Abiotic factors such as lighting, water flow, and water chemistry can act synergistically, and changes to more than one need to be made in order to cause positive change.”
Quote in the paperNot a substantial claimMay combine two claims.
PremisecitationAquaria housing corals require proper water chemistry and proper water flow rate and type of motion.
“Aquaria housing corals require not only the proper water chemistry but the proper water flow rate and type of motion [5].”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [5] Spotte, S. (1973). Marine Aquarium Keeping: The Science, Animals, and Art, John Wiley & Sons. [1st ed.].
Not checked in the free run.
Probably not a substantial claim: may not pass S3 (load-bearing).
InterpretationreasoningRepeated photographs of sectors of the exhibit or particular animals allow for more consistent monitoring of the progression or improvement of subjects.
“Repeated photographs of sectors of the exhibit or particular animals allow for more consistent monitoring of the progression or improvement of subjects (Figure 2).”
Quote in the paperNot a substantial claimMay combine two claims.
PremisecitationSixline wrasse (Pseudocheilinus hexataenia) feeds on Pyramidellidae snails that are pests of Tridacnidae clams, and tail spot wrasse (Halichoeres melanurus) feeds on acoel flatworms.
“such as the sixline wrasse (Pseudocheilinus hexataenia), which feeds on Pyramidellidae snails that are pests of Tridacnidae clams, and tail spot wrasse (Halichoeres melanurus) that feed on acoel flatworms [2].”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [2] Delbeek, J.C., and Sprung, J.F. (2005). The Reef Aquarium: Science, Art and Technology, Ricordea Publishing. [1st ed.].
Not checked in the free run.
Probably not a substantial claim: may not pass S2 (checkable), S3 (load-bearing). May combine two claims.
PremisecitationAnimal welfare refers to animals' collective physical, mental, and emotional states over a period of time, and it is measured on a continuum ranging from good to poor.
“In general, animal welfare refers to animals' collective physical, mental, and emotional states over a period of time, and it is measured on a continuum ranging from good to poor [7].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [7] AZA (2023, July 18). Animal Welfare Committee. Available online: www.aza.org/animal_welfare_committee.
Not checked in the free run.
May combine two claims.
InterpretationreasoningThe existing natural seawater infrastructure was not sustainable for the long-term supply of seawater to the aquarium, and two years after the PCR debut, Steinhart switched to synthetic seawater.
“Ultimately, it was decided that the existing infrastructure was not sustainable for the long-term supply of seawater to the aquarium, and two years after the debut of the PCR, the decision to switch from natural seawater to synthetic seawater was made.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
Study design and conductreasoningThe aquarium now implements a rigorous protocol of analyzing every bag of salt that arrives, with unacceptable bags being returned to the manufacturer for exchange.
“Now, the aquarium implements a rigorous protocol of analyzing every bag of salt that arrives, with unacceptable bags being returned to the manufacturer for exchange.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
Study design and conductreasoningIncoming water is regularly tested, and the salt formulation is adjusted frequently to account for seasonal alkalinity changes.
“Incoming water has to be regularly tested, and the salt formulation is adjusted frequently in order to account for these changes.”
Quote in the paperNot a substantial claimClassified as probably not a substantial claim.
Premisenone givenSuccessfully replicating a coral reef habitat in human care necessitates accounting for the physical needs of the species involved, not only for their health but also so that they have the opportunity to carry out their natural behaviors.
“Successfully replicating such a habitat in human care necessitates accounting for the physical needs of the species involved, not only for their health but also so that they have the opportunity to carry out their natural behaviors.”
Quote in the paperSubstantial claimProbably not a substantial claim: may not pass S2 (checkable). May combine two claims.
InterpretationreasoningThe interplay of husbandry factors, animal behaviors, and health management contributes to a positive welfare experience and the vibrant growth of all tank animals, leading to the aquarium's excellent, aesthetically pleasing appearance.
“Ultimately, the interplay of husbandry factors, animal behaviors, and health management contributes to a positive welfare experience and the vibrant growth of all tank animals, leading to the aquarium's excellent, aesthetically pleasing appearance (Figure 6).”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S2 (checkable), S4 (based). May combine two claims.
Interpretationnone givenNot all positive outcomes can be linked to any one particular change, and sometimes several simultaneous alterations are required before improvement is noted.
“Aquarium teams should consider that not all positive outcomes can be linked to any one particular change and that, sometimes, several simultaneous alterations are required before improvement is noted.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S2 (checkable), S4 (based).
InterpretationreasoningBecause of the interplay between the living and nonliving parts of a captive aquarium system, it is important to assess these parameters for aquariums of any size.
“However, because of the interplay between the living and nonliving parts of a captive aquarium system, it is important to assess these parameters for aquariums of any size.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S2 (checkable), S4 (based).
Interpretationnone givenDespite the complicated husbandry and species considerations for aquatic animals, these recommendations and standards can be incorporated by public aquariums.
“Despite the complicated husbandry and species considerations for aquatic animals, these recommendations and standards can be incorporated by public aquariums.”
Quote in the paperNot a substantial claim
The authors state this as an assumption.
Husbandry factors caused the improvement in relocated bleached coral colonies, because their statuses improved with only this change.
“The ultimate cause of malaise may never be known, but husbandry factors are assumed because the animals' statuses improved with only this change.”
The paper relies on this without support.
LED lights are more energy-efficient than the metal halide fixtures that have been used over the PCR.
“Light-emitting diode (LED) lights are more energy-efficient than the metal halide fixtures that have been used over the PCR.”
The paper relies on this without support.
Many butterflyfish species are not compatible with corals because of their tendency to predate corals.
“For example, many butterflyfish (Family: Chaetodontidae) are beautiful and favorites among the public, but given their tendency to predate corals, most species are not compatible, and the aquarium limits these in the habitat.”
The paper relies on this without support.
The causes of many coral ailments in closed systems are still very much a 'black box' despite husbandry or medical interference.
“It is important to point out that the causes of many coral ailments in closed systems are still very much a”
The paper relies on this without support.
Diver feeding opportunities would not occur in the wild.
“such opportunities would not occur in the wild”
The paper relies on this without support.
Current recommendations for zoo and aquarium practices are shifting toward an emphasis on animal welfare and well-being, key parts of excellent captive animal care.
“Current recommendations for zoo and aquarium practices are shifting toward an emphasis on animal welfare and well-being, key parts of excellent captive animal care.”
The paper relies on this without support.
The ultimate goal of modern public zoos and aquariums is to educate the public about the natural world while providing an excellent, unique entertainment experience.
“The ultimate goal of modern public zoos and aquariums is to educate the public about the natural world while providing an excellent, unique entertainment experience.”
The paper relies on this without support.
Some fish, such as Niger triggerfish (Odonus niger), have substantial dentition that can cause damage to fingers.
“some of the fish (e.g., Niger triggerfish, Odonus niger) have substantial dentition that can cause damage to fingers”
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
Each contradiction between two passages listed here was confirmed by an independent check.
The flatworm citation points to euthanasia guidelines
MinorThe statement about Amakusaplana acroporae cites reference 13, which is the AVMA euthanasia guidelines; the listed flatworm paper is reference 12.
“Intermittent outbreaks of acoel flatworms, such as the recently described species Amakusaplana acroporae, are addressed with freshwater flushes during dives [13].”
“13. AVMA. AVMA Guidelines for the Euthanasia of Animals: 2020 Edition.”
The seawater formula gives an inconsistent gallon-to-liter conversion
MinorThe formula equates 1000 gallons with 3.79 L, while the paper elsewhere equates 16,000 gallons with 60,567 L. Using that conversion, 1000 gallons is about 3785 L, not 3.79 L.
“This formula is to make 1000 gallons (3.79 L) of saltwater.”
“The saltwater is made by brining dechlorinated municipal freshwater with a blend of major, minor, and trace elements mixed in a 16,000 gallon (60,567 L; 60.6 m 3 ) cistern.”
The surgeonfish citation points to a sea-spider paper
MinorThe discussion cites reference 9 for the functional roles of surgeonfish, but reference 9 is about treating sea-spider infestations in corals.
“For example, the PCR houses 22 species of surgeonfish (Family: Acanthuridae), which were chosen specifically for the functional trophic groups they fall into, each of which make critical contributions to the ecosystem processes through macroalgal removal, affecting sediment dynamics, and other functions [9].”
“9. Krol, L.; Dunker, F.H.; LaDouceur, E.; Biswell, E.; Dilly, G.F.; Delbeek, J.C.; Albright, R.; López-Nandam, E.H.; Reinbold, N.; Igel, A.; et al. Milbemycin oxime (Interceptor) treatment of pycnogonid sea spider infestation in three species of corals.”
Cites
AVMA Guidelines for the Euthanasia of Animals: 2013 Edition
Leary, S., Underwood, W. J., Anthony, R., Cartner, S. C., Corey, D. G., Grandin, T., Greenacre, C. B., Gwaltney-Bran, S., McCrackin, M. A., Meyer, R. E., et al. (2013) · Cited by 1,349 · see citing works
Diversity and distribution of coral-associated bacteria
Rohwer, F., Seguritan, V, Azam, F., & Knowlton, N. (2002) · Marine Ecology Progress Series · doi:10.3354/meps243001 · Cited by 1,337 · see citing works
The functional roles of surgeonfishes on coral reefs: Past, present and future
Tebbett, S. B., Siqueira, A. C., & Bellwood, D. R. (2022) · Reviews in Fish Biology and Fisheries · doi:10.1007/s11160-021-09692-6 · Cited by 71 · see citing works
Clinical Guide to Fish Medicine
(2021) · doi:10.1002/9781119259886 · Cited by 60 · see citing works
(2022) · doi:10.1002/9781119569831 · Cited by 28 · see citing works
The corallivorous flatworm Amakusaplana acroporae: An invasive species threat to coral reefs?
Hume, B. C. C., D’Angelo, C., Cunnington, A., Smith, E. G., & Wiedenmann, J. (2014) · Coral Reefs · doi:10.1007/s00338-013-1101-6 · Cited by 17 · cited 1× · see citing works
“Intermittent outbreaks of acoel flatworms, such as the recently described species Amakusaplana acroporae , are addressed with freshwater flushes during dives [13].”
A highly effective therapeutic ointment for treating corals with black band disease
Eaton, K. R., Clark, A. S., Curtis, K., Favero, M., Hanna Holloway, N., Ewen, K., & Muller, E. M. (2022) · PLOS ONE · doi:10.1371/journal.pone.0276902 · Cited by 14 · cited 2× · see citing works
“…Jelly Syndrome (BJS) have benefited from a treatment regimen involving a coral-safe paste (CoralCure Ointment Base2B, Ocean Alchemists LLC, Largo, FL, USA) mixed with amoxicillin (Sandoz Inc., Princeton, NJ, USA), which is applied to affected tissues 1–3 times a week during dives (Figure 5a) [12].”
BackgroundPrinz, N., Story, R., Lyon, S., Ferse, S. C. A., & Bejarano, S. (2020) · Frontiers in Marine Science · doi:10.3389/fmars.2020.00145 · Cited by 8 · see citing works
Krol, L., Dunker, F. H., LaDouceur, E., Biswell, E., Dilly, G. F., Delbeek, J. C., Albright, R., López-Nandam, E. H., Reinbold, N., Igel, A., et al. (2023) · Journal of Zoo and Wildlife Medicine · doi:10.1638/2022-0028 · Cited by 5 · cited 1× · see citing works
“The PCR tank has a history of pycnogonid sea spider presence, and colonies noted to be harboring heavy populations of these arthropods (primarily Pocillopora damicornis ) were removed to prevent an overflow of sea spiders damaging the other corals [10].”
BackgroundSelf-citationCORAL REEF AQUARIUM HUSBANDRY AND HEALTH
Lehmann, W. (2022) · Invertebrate Medicine · doi:10.1002/9781119569831.ch6
Flagged first, then by citations
Research works printed but not linked: 2
- Spotte, S. (1973). Marine Aquarium Keeping: The Science, Animals, and Art, John Wiley & Sons. [1st ed.].
- Fowler, M., and Miller, R.E. (2012). Fowler’s Zoo and Wild Animal Medicine, Elsevier Saunders. [7th ed.].
Cited by
Sorted by citations
Climate extreme triggers cold-water community rescue
Ebner, B. C., Lobegeiger, J. S., Coe, J., Balcombe, S. R., Latimer, D., Pickering, G., & Marshall, J. C. (2024) · Marine and Freshwater Research · doi:10.1071/mf24046 · Cited by 1 · see citing works
- Authors
- Krol, L., Melton, B., Delbeek, J. C., Dunker, F. H., & Shepherd, B.
- Affiliations
- California Academy of Sciences (US)
- Corresponding author
- Krol, Lana
- Venue
- Journal of Zoological and Botanical Gardens
- Publisher
- MDPI AG
- Published
- 2023-11-27
- Volume
- 4
- Issue
- 4
- Pages
- 738-750
- ISSN
- 2673-5636 (ISSN-L)
- OpenAlex
- W4389057583
- Semantic Scholar
- 4befdfb7fd493825766ee5f914a3b581bcdea038
- Cited by
- 1
- References
- 9
- Citations by year
- 2024: 1
- FWCI
- 0.16
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Licence
- Locations
- Journal of Zoological and Botanical Gardens (publishedVersion, cc-by)
- DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
- Topics
- Physical Sciences › Environmental Science › Ecology › Coral and Marine Ecosystems Studies
- Health Sciences › Veterinary › Small Animals › Animal Behavior and Welfare Studies
- Physical Sciences › Environmental Science › Nature and Landscape Conservation › Ichthyology and Marine Biology
- Keywords
- habitat design, water quality, lighting, water flow, welfare monitoring, mesocosm experiment
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Claims read by deepseek-v4.1-flash under definition version 3 (extract-v3) on 2026-10-26.
Classified by jev-1.13-20260917 (gold-guideline-v0.2) on 2026-10-26.
Cited sources are checked by gpt-6-sol.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
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