CoChat
Sign Up
Cited by 22Microbial bioremediation and biosurfactantsMicrobial metabolism and enzyme functionSteroid Chemistry and Biochemistry

Cupriavidus metallidurans CH34 Possesses Aromatic Catabolic Versatility and Degrades Benzene in the Presence of Mercury and Cadmium

Open access
Alviz-Gazitua, Pablo, Durán, Roberto E., Millacura, Felipe A., Cárdenas, Franco, Rojas, Luis A., Seeger, Michael·2022·Microorganisms
DOI 10.3390/microorganisms10020484PMC PMC8879955
Open this paper in CoChat — free accountOpen PDF

Abstract

Heavy metal co-contamination in crude oil-polluted environments may inhibit microbial bioremediation of hydrocarbons. The model heavy metal-resistant bacterium Cupriavidus metallidurans CH34 possesses cadmium and mercury resistance, as well as genes related to the catabolism of hazardous BTEX aromatic hydrocarbons. The aims of this study were to analyze the aromatic catabolic potential of C. metallidurans CH34 and to determine the functionality of the predicted benzene catabolic pathway and the influence of cadmium and mercury on benzene degradation. Three chromosome-encoded bacterial multicomponent monooxygenases (BMMs) are involved in benzene catabolic pathways. Growth assessment, intermediates identification, and gene expression analysis indicate the functionality of the benzene catabolic pathway. Strain CH34 degraded benzene via phenol and 2-hydroxymuconic semialdehyde. Transcriptional analyses revealed a transition from the expression of catechol 2,3-dioxygenase (tomB) in the early exponential phase to catechol 1,2-dioxygenase (catA1 and catA2) in the late exponential phase. The minimum inhibitory concentration to Hg (II) and Cd (II) was significantly lower in the presence of benzene, demonstrating the effect of co-contamination on bacterial growth. Notably, this study showed that C. metallidurans CH34 degraded benzene in the presence of Hg (II) or Cd (II).

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Integrity signals

Registry

Crossref · 10.3390/microorganisms10020484

Cites

1 of 1 references verified0 citation errors · 0 not checkable

Statistics

Claims the paper makes

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

The self-check needs the paper’s full text.

Cites

Flagged first, then by citations

Research works printed but not linked: 98

  1. [1]Fuchs G. Boll M. Heider J. Microbial degradation of aromatic compounds- From one strategy to four Nat. Rev. Microbiol. 2011 9 803 816 10.1038/nrmicro2652 21963803 · DOI
  2. [2]Fuentes S. Méndez V. Aguila P. Seeger M. Bioremediation of petroleum hydrocarbons: Catabolic genes, microbial communities, and applications App. Microbiol. Biotech. 2014 98 4781 4794 10.1007/s00253-014-5684-9 24691868 · DOI
  3. [3]Liu S.H. Lai C.Y. Ye J.W. Lin C.W. Increasing removal of benzene from groundwater using stacked tubular air-cathode microbial fuel cells J. Clean. Prod. 2018 194 78 84 10.1016/j.jclepro.2018.05.138 · DOI
  4. [4]van der Perk M. Soil and Water Contamination 2nd ed. Organic Pollutants CRC Press Leiden, The Netherland 2014 167
  5. [5]Nojiri H. Tsuda M. Kamagata Y. Fukuda M. Biodegradative Bacteria: How Bacteria Degrade, Survive, Adapt, and Evolve Springer Tokyo, Japan 2014 228 10.1007/978-4-431-54520-0 · DOI
  6. [6]Sandrin T.R. Maier R.M.M. Impact of metals on the biodegradation of organic pollutants Health Perspect. 2003 111 1093 1101 10.1289/ehp.5840 PMC1241557 12826480 · DOI
  7. [7]Sprocati A.R. Alisi C. Tasso F. Marconi P. Sciullo A. Pinto V. Chiavarini S. Ubaldi C. Cremisini C. Bioremediation of diesel oil in a co-contaminated soil by bioaugmentation with a microbial formula tailored with native strains selected for heavy metals resistance Process Biochem. 2012 47 1649 1655 10.1016/j.procbio.2011.10.001 19201450 · DOI
  8. [8]Nies D. The biological chemistry of the transition metal transportome of: Cupriavidus metallidurans Metallomics 2016 8 481 507 10.1039/C5MT00320B 27065183 · DOI
  9. [9]Méndez V. Fuentes S. Morgante V. Hernández M. González M. Moore E. Seeger M. Novel hydrocarbonoclastic metal-tolerant Acinetobacter and Pseudomonas strains from Aconcagua river oil-polluted soil J. Soil Sci. Plant Nutr. 2017 17 1074 1087 10.4067/S0718-95162017000400017 · DOI
  10. [10]Liu X.X. Hu X. Cao Y. Pang W.J. Huang J.Y. Guo P. Huang L. Biodegradation of phenanthrene and heavy metal removal by acid-tolerant Burkholderia fungorum FM-2 Front. Microbiol. 2019 10 408 10.3389/fmicb.2019.00408 30930861 PMC6427951 · DOI
  11. [11]Bravo G. Vega-Celedón P. Gentina J.C. Seeger M. Bioremediation by Cupriavidus metallidurans strain MSR33 of mercury-polluted agricultural soil in a rotary drum bioreactor and its effects on nitrogen cycle microorganisms Microorganisms 2020 8 1952 10.3390/microorganisms8121952 PMC7763483 33316980 · DOI · Paper page
  12. [12]Gran-Scheuch A. Ramos-Zuñiga J. Fuentes E. Bravo D. Pérez-Donoso J.M. Effect of co-contamination by PAHs and heavy metals on bacterial communities of diesel contaminated soils of South Shetland Islands, Antarctica Microorganisms 2020 8 1749 10.3390/microorganisms8111749 PMC7695015 33171767 · DOI
  13. [13]Rizzuti A.M. Cohen A.D. Stack E.M. Effects of irradiating peats on their ability to extract BTEX and cadmium from contaminated water J. Environ. Sci. Health A 1996 31 1917 1949 10.1080/10934529609376466 · DOI
  14. [14]Baldrian P. in der Wiesche C. Jiří G. Nerud F. Zadražil F. Influence of cadmium and mercury on activities of ligninolytic enzymes and degradation of polycyclic aromatic hydrocarbons by Pleurotus ostreatus in soil Appl. Environ. Microbiol. 2000 66 2471 2478 10.1128/AEM.66.6.2471-2478.2000 10831426 PMC110561 · DOI
  15. [15]Kavamura V.N. Esposito E. Biotechnological strategies applied to the decontamination of soils polluted with heavy metals Biotechnol. Adv. 2010 28 61 69 10.1016/j.biotechadv.2009.09.002 19778598 · DOI
  16. [16]Ekperusi O.A. Aigbodion I.F. Bioremediation of heavy metals and petroleum hydrocarbons in diesel contaminated soil with the earthworm: Eudrilus eugeniae SpringerPlus 2015 4 1 13 10.1186/s40064-015-1328-5 26413446 PMC4579197 · DOI
  17. [17]Joseph P. Mechanisms of cadmium carcinogenesis Toxicol. Appl. Pharmacol. 2009 238 272 279 10.1016/j.taap.2009.01.011 19371617 · DOI
  18. [18]Begg S.L. Eijkelkamp B.A. Luo Z. Couñago R.M. Morey J.R. Maher M.J. Ong C.L.Y. McEwan A.G. Kobe B. O’Mara M.L. Dysregulation of transition metal ion homeostasis is the molecular basis for cadmium toxicity in Streptococcus pneumoniae Nat. Commun. 2015 6 1 11 10.1038/ncomms7418 PMC4366526 25731976 · DOI
  19. [19]Kovarik W. Ethyl-leaded gasoline: How a classic occupational disease became an international public health disaster Int. J. Occup. Environ. Health 2005 11 384 397 10.1179/oeh.2005.11.4.384 16350473 · DOI
  20. [20]Kristensen A.K.B. Thomsen J.F. Mikkelsen S. A review of mercury exposure among artisanal small-scale gold miners in developing countries Int. Arch. Occup. Environ. Health 2014 87 579 590 10.1007/s00420-013-0902-9 23979147 · DOI
  21. [21]Bravo G. Vega-Celedón P. Gentina J.C. Seeger M. Effects of mercury II on Cupriavidus metallidurans strain MSR33 during mercury bioremediation under aerobic and anaerobic conditions Processes 2020 8 893 10.3390/pr8080893 PMC7763483 33316980 · DOI
  22. [22]Amor L. Kennes C. Veiga M.C. Kinetics of inhibition in the biodegradation of monoaromatic hydrocarbons in presence of heavy metals Bioresour. Technol. 2001 78 181 185 10.1016/S0960-8524(00)00182-6 11333038 · DOI
  23. [23]Harrison J.J. Ceri H. Turner R.J. Multimetal resistance and tolerance in microbial biofilms Nat. Rev. Microbiol. 2007 5 928 938 10.1038/nrmicro1774 17940533 · DOI
  24. [24]Boyd E.S. Barkay T. The mercury resistance operon: From an origin in a geothermal environment to an efficient detoxification machine Front. Microbiol. 2012 3 1 13 10.3389/fmicb.2012.00349 23087676 PMC3466566 · DOI
  25. [25]Montero-Silva F. Durán N. Seeger M. Synthesis of extracellular gold nanoparticles using Cupriavidus metallidurans CH34 cells IET Nanobiotechnol. 2018 12 40 46 10.1049/iet-nbt.2017.0185 · DOI
  26. [26]Springael D. Diels L. Hooyberghs L. Kreps S. Mergeay M. Construction and characterization of heavy metal-resistant haloaromatic-degrading Alcaligenes eutrophus strains Appl. Environ. Microbiol. 1993 59 334 339 10.1128/aem.59.1.334-339.1993 8439161 PMC202101 · DOI
  27. [27]Pérez-Pantoja D. De la Iglesia R. Pieper D.H. González B. Metabolic reconstruction of aromatic compounds degradation from the genome of the amazing pollutant-degrading bacterium Cupriavidus necator JMP134 FEMS Microbiol. Rev. 2008 32 736 794 10.1111/j.1574-6976.2008.00122.x 18691224 · DOI
  28. [28]Pérez-Pantoja D. Donoso R. Agulló L. Córdova M. Seeger M. Pieper D.H. González B. Genomic analysis of the potential for aromatic compounds biodegradation in Burkholderiales Environ. Microbiol. 2012 14 1091 1117 10.1111/j.1462-2920.2011.02613.x 22026719 · DOI
  29. [29]Fang L.C. Chen Y.F. Wang D.S. Sun L.N. Tang X.Y. Hua R.M. Complete genome sequence of a novel chlorpyrifos degrading bacterium, Cupriavidus nantongensis X1 J. Biotechnol. 2016 227 1 2 10.1016/j.jbiotec.2016.04.012 27063140 · DOI
  30. [30]Van Houdt R. Provoost A. Van Assche A. Leys N. Lievens B. Mijnendonckx K. Monsieurs P. Cupriavidus metallidurans strains with different mobilomes and from distinct environments have comparable phenomes Genes 2018 9 507 10.3390/genes9100507 PMC6210171 30340417 · DOI
  31. [31]Moriuchi R. Dohra H. Kanesaki Y. Ogawa N. Complete genome sequence of 3-chlorobenzoate-degrading bacterium Cupriavidus necator NH9 and reclassification of the strains of the genera Cupriavidus and Ralstonia based on phylogenetic and whole-genome sequence analyses Front. Microbiol. 2019 10 133 10.3389/fmicb.2019.00133 30809202 PMC6379261 · DOI
  32. [32]Alvarez-Santullano N. Villegas P. Mardones M.S. Durán R.E. Donoso R. González A. Sanhueza C. Navia R. Acevedo F. Pérez-Pantoja D. Genome-wide metabolic reconstruction of the synthesis of polyhydroxyalkanoates from sugars and fatty acids by Burkholderia sensu lato species Microorganisms 2021 9 1290 10.3390/microorganisms9061290 34204835 PMC8231600 · DOI
  33. [33]Suenaga H. Yamazoe A. Hosoyama A. Kimura N. Hirose J. Watanabe T. Fujihara H. Futagami T. Goto M. Furukawa K. Draft genome sequence of the polychlorinated biphenyl-degrading bacterium Cupriavidus basilensis KF708 (NBRC 110671) isolated from biphenyl-contaminated soil Genome Announc. 2015 3 e00143-15 10.1128/genomeA.00143-15 25792061 PMC4395071 · DOI
  34. [35]Rojas L.A. Yáñez C. González M. Lobos S. Smalla K. Seeger M. Characterization of the metabolically modified heavy metal-resistant Cupriavidus metallidurans strain MSR33 generated for mercury bioremediation PLoS ONE 2011 6 e0017555 10.1371/journal.pone.0017555 21423734 PMC3056708 · DOI
  35. [36]Espinoza-Tofalos A. Daghio M. González M. Papacchini M. Franzetti A. Seeger M. Toluene degradation by Cupriavidus metallidurans CH34 in nitrate-reducing conditions and in bioelectrochemical systems FEMS Microbiol. Lett. 2018 365 fny119 10.1093/femsle/fny119 29771316 · DOI
  36. [37]Monchy S. Benotmane M.A. Janssen P. Vallaeys T. Taghavi S. van der Lelie D. Mergeay M. Plasmids pMOL28 and pMOL30 of Cupriavidus metallidurans are specialized in the maximal viable response to heavy metals J. Bacteriol. 2007 189 7417 7425 10.1128/JB.00375-07 17675385 PMC2168447 · DOI
  37. [38]Janssen P.J. Van Houd T.R. Moors H. Monsieurs P. Morin N. Michaux A. Benotmane R. Leys N. Vallaeys T. Lapidus A. The complete genome sequence of Cupriavidus metallidurans strain CH34, a master survivalist in harsh and anthropogenic environments PLoS ONE 2010 5 e10433 10.1371/journal.pone.0010433 20463976 PMC2864759 · DOI
  38. [39]Millacura F.A. Janssen P.J. Monsieurs P. Janssen A. Provoost A. Van Houdt R. Rojas L.A. Unintentional genomic changes endow Cupriavidus metallidurans with an augmented heavy-metal resistance Genes 2018 9 551 10.3390/genes9110551 30428624 PMC6266692 · DOI
  39. [40]Alviz-Gazitua P. Fuentes-Alburquenque S. Rojas L.A. Turner R.J. Guiliani N. Seeger M. The response of Cupriavidus metallidurans CH34 to cadmium involves inhibition of the initiation of biofilm formation, decrease in intracellular c-di-GMP levels, and a novel metal regulated phosphodiesterase Front. Microbiol. 2019 10 1 17 10.3389/fmicb.2019.01499 31338076 PMC6629876 · DOI
  40. [42]Mergeay M. Nies D. Schlegel H.G. Gerits J. Charles P. Van Gijsegem F. Alcaligenes eutrophus CH34 is a facultative chemolithotroph with plasmid-bound resistance to heavy metals J. Bacteriol. 1985 162 328 334 10.1128/jb.162.1.328-334.1985 3884593 PMC218993 · DOI
  41. [43]Rosier C. Leys N. Henoumont C. Mergeay M. Wattiez R. Purification and characterization of the acetone carboxylase of Cupriavidus metallidurans Strain CH34 Appl. Environ. Microbiol. 2012 78 4516 4518 10.1128/AEM.07974-11 22492439 PMC3370517 · DOI
  42. [44]Van Houdt R. Monsieurs P. Mijnendonckx K. Provoost A. Janssen A. Mergeay M. Leys N. Variation in genomic islands contribute to genome plasticity in Cupriavidus metallidurans BMC Genom. 2012 13 111 10.1186/1471-2164-13-111 PMC3384475 22443515 · DOI
  43. [45]Springael D. Diels L. Mergeay M. Transfer and expression of PCB-degradative genes into heavy metal resistant Alcaligenes eutrophus strains Biodegradation 1994 5 343 357 10.1007/BF00696469 7765842 · DOI
  44. [46]David C. Daro A. Szalai E. Atarhouch T. Mergeay M. Formation of polymeric pigments in the presence of bacteria and comparison with chemical oxidative coupling—II. Catabolism of tyrosine and hydroxyphenylacetic acid by Alcaligenes eutrophus CH34 and mutants Eur. Polym. J. 1996 32 669 679 10.1016/0014-3057(95)00207-3 · DOI
  45. [47]Van Houdt R. Monchy S. Leys N. Mergeay M. New mobile genetic elements in Cupriavidus metallidurans CH34, their possible roles and occurrence in other bacteria Antonie Leeuwenhoek 2009 96 205 226 10.1007/s10482-009-9345-4 19390985 · DOI
  46. [48]Notomista E. Lahm A. Di Donato A. Tramontano A. Evolution of bacterial and archaeal multicomponent monooxygenases J. Mol. Evol. 2003 56 435 445 10.1007/s00239-002-2414-1 12664163 · DOI
  47. [49]Reardon K.F. Mosteller D.C. Bull Rogers J.D. Biodegradation kinetics of benzene, toluene, and phenol as single and mixed substrates for Pseudomonas putida F1 Biotechnol. Bioeng. 2000 69 385 400 10.1002/1097-0290(20000820)69:4<385::AID-BIT5>3.0.CO;2-Q 10862677 · DOI
  48. [50]Durán R.E. Méndez V. Rodriguez-Castro L. Barra-Sanhueza B. Salvà-Serra F. Moore E.R.B. Castro-Nallar E. Seeger M. Genomic and physiological traits of the marine bacterium Alcaligenes aquatilis QD168 isolated from Quintero Bay, Central Chile, reveal a robust adaptive response to environmental stressors Front. Microbiol. 2019 10 528 10.3389/fmicb.2019.00528 31024465 PMC6460240 · DOI
  49. [51]Ng L.C. Shingle V. Sze C.C. Poh C.L. Cloning and sequences of the first eight genes of the chromosomally encoded (methyl) phenol degradation pathway from Pseudomonas putida P35X Gene 1994 151 29 36 10.1016/0378-1119(94)90629-7 7828892 · DOI
  50. [52]Reardon K.F. Mosteller D.C. Rogers Bull J.D. DuTeau N.M. Kim K.H. Biodegradation kinetics of aromatic hydrocarbon mixtures by pure and mixed bacterial cultures Environ. Health Persp. 2002 110 1005 1101 10.1289/ehp.02110s61005 PMC1241285 12634132 · DOI
  51. [53]Sandhu A. Halverson L.J. Beattie G.A. Bacterial degradation of airborne phenol in the phyllosphere Environ. Microbiol. 2007 9 383 392 10.1111/j.1462-2920.2006.01149.x 17222136 · DOI
  52. [54]Parales R.E. Parales J.V. Pelletier D.A. Ditty J.L. Chapter 1 Diversity of microbial toluene degradation pathways Adv. Appl. Microbiol. 2008 64 1 73 10.1016/S0065-2164(08)00401-2 18485280 · DOI
  53. [55]Cai S. Chen L.W. Ai Y.C. Qiu J.G. Wang C.H. Shi C. He J. Cai T.M. Degradation of diphenyl ether in Sphingobium phenoxybenzoativorans SC_3 is initiated by a novel ring cleavage dioxygenase Appl. Environ. Microbiol. 2017 83 e00104-17 10.1128/AEM.00104-17 28283519 PMC5411504 · DOI
  54. [56]Arai H. Ishii M. Draft genome sequence of Comamonas testosteroni TA441, a bacterium that has a cryptic phenol degradation gene cluster Microbiol. Resour. Announc. 2019 8 e00946-19 10.1128/MRA.00946-19 31558634 PMC6763649 · DOI
  55. [57]Katoh K. Misawa K. Kuma K.I. Miyata T. MAFFT: A novel method for rapid multiple sequence alignment based on fast Fourier transform Nucleic Acids Res. 2002 30 3059 3066 10.1093/nar/gkf436 12136088 PMC135756 · DOI · Paper page
  56. [58]Larsson A. AliView: A fast and lightweight alignment viewer and editor for large datasets Bioinformatics 2014 30 3276 3278 10.1093/bioinformatics/btu531 25095880 PMC4221126 · DOI
  57. [59]Ronquist F. Teslenko M. Van Der Mark P. Ayres D.L. Darling A. Höhna S. Larget B. Liu L. Suchard M.A. Huelsenbeck J.P. Mrbayes 3.2: Efficient bayesian phylogenetic inference and model choice across a large model space Syst. Biol. 2012 61 539 542 10.1093/sysbio/sys029 22357727 PMC3329765 · DOI
  58. [61]Pfaffl M.W. Tichopad A. Prgomet C. Neuvians T.P. Determination of stable housekeeping genes, differentially regulated target genes and sample integrity: BestKeeper—Excel-based tool using pair-wise correlation Biotechnol. Lett. 2004 26 509 515 10.1023/B:BILE.0000019559.84305.47 15127793 · DOI · Paper page
  59. [62]Pfaffl M.W. A new mathematical model for relative quantification in real-time RT-PCR Nucleic Acids Res. 2001 29 e45 10.1093/nar/29.9.e45 11328886 PMC55695 · DOI · Paper page
  60. [63]Sala-Trepat J.M. Evans W.C. The meta cleavage of catechol by Azotobacter species. 4-Oxalocrotonate pathway Eur. J. Biochem. 1971 20 400 413 10.1111/j.1432-1033.1971.tb01406.x 4325686 · DOI
  61. [64]Hearn E.M. Patel D.R. Van Den Berg B. Outer-membrane transport of aromatic hydrocarbons as a first step in biodegradation Proc. Natl. Acad. Sci. USA 2008 105 8601 8606 10.1073/pnas.0801264105 18559855 PMC2438428 · DOI
  62. [65]Rüegg I. Hafner T. Bucheli-Witschel M. Egli T. Dynamics of benzene and toluene degradation in Pseudomonas putida F1 in the presence of the alternative substrate succinate Eng. Life Sci. 2007 7 331 342 10.1002/elsc.200720202 · DOI
  63. [66]Yu H. Kim B.J. Rittmann B.E. The roles of intermediates in biodegradation of benzene, toluene, and p-xylene by Pseudomonas putida F1 Biodegradation 2001 12 455 463 10.1023/A:1015008627732 12051651 · DOI
  64. [67]Shi Y. Chai L. Tang C. Yang Z. Zhang H. Chen R. Chen Y. Zheng Y. Characterization and genomic analysis of kraft lignin biodegradation by the beta-proteobacterium Cupriavidus basilensis B-8 Biotechnol. Biofuels. 2013 6 1 4 10.1186/1754-6834-6-1 23298573 PMC3560178 · DOI
  65. [68]Moriuchi R. Dohra H. Kanesaki Y. Ogawa N. Transcriptome differences between Cupriavidus necator NH9 grown with 3-chlorobenzoate and that grown with benzoate Biosci. Biotechnol. Biochem. 2021 85 1546 1561 10.1093/bbb/zbab044 33720310 · DOI
  66. [69]Lykidis A. Perez-Pantoja D. Ledger T. Mavromatis K. Anderson I.J. Ivanova N.N. Hooper S.D. Lapidus A. Lucas S. Gonzalez B. The complete multipartite genome sequence of Cupriavidus necator JMP134, a versatile pollutant degrader PLoS ONE 2010 5 e9729 10.1371/journal.pone.0009729 20339589 PMC2842291 · DOI
  67. [70]Sauret-Ignazi G. Gagnon J. Béguin C. Barrelle M. Markowicz Y. Pelmont J. Toussaint A. Characterization of a chromosomally encoded catechol 1,2-dioxygenase (E.C. 1.13.11.1) from Alcaligenes eutrophus CH34 Arch. Microbiol. 1996 166 42 50 10.1007/s002030050353 8661943 · DOI
  68. [71]Han L. Chen S. Zhou J. Expression and cloning of catA encoding a catechol 1,2-dioxygenase from the 2,4-D-degrading strain Cupriavidus campinensis BJ71 Prep. Biochem. Biotechnol. 2020 50 486 493 10.1080/10826068.2019.1709978 31900038 · DOI
  69. [72]Pérez-Pantoja D. Ledger T. Pieper D.H. González B. Efficient turnover of chlorocatechols is essential for growth of Ralstonia eutropha JMP134 (pJP4) in 3-chlorobenzoic acid J. Bacteriol. 2003 185 1534 1542 10.1128/JB.185.5.1534-1542.2003 12591870 PMC148064 · DOI
  70. [73]Donoso R.A. Ruiz D. Gárate-Castro C. Villegas P. González-Pastor J.E. de Lorenzo V. González B. Pérez-Pantoja D. Identification of a self-sufficient cytochrome P450 monooxygenase from Cupriavidus pinatubonensis JMP134 involved in 2-hydroxyphenylacetic acid catabolism, via homogentisate pathway Microb. Biotechnol. 2021 14 1944 1960 10.1111/1751-7915.13865 34156761 PMC8449657 · DOI
  71. [74]Cafaro V. Izzo V. Scognamiglio R. Notomista E. Capasso P. Casbarra A. Pucci P. Di Donato A. Phenol hydroxylase and toluene/o-xylene monooxygenase from Pseudomonas stutzeri OX1: Interplay between Two Enzymes Appl. Environ. Microbiol. 2004 70 2211 2219 10.1128/AEM.70.4.2211-2219.2004 15066815 PMC383105 · DOI
  72. [75]Shields M.S. Montgomery S.O. Chapman P.J. Cuskey S.M. Pritchard P.H. Novel pathway of toluene catabolism in the trichloroethylene-degrading bacterium G4 App. Environ. Microbiol. 1989 55 1624 1629 10.1128/aem.55.6.1624-1629.1989 PMC202915 16347956 · DOI
  73. [76]Hur H.G. Newman L.M. Wackett L.P. Sadowsky M.J. Toluene 2-monooxygenase-dependent growth of Burkholderia cepacia G4/PR1 on diethyl ether Appl. Environ. Microbiol. 1997 63 1606 1609 10.1128/aem.63.4.1606-1609.1997 16535583 PMC1389561 · DOI
  74. [77]O’Sullivan L.A. Weightman A.J. Jones T.H. Marchbank A.M. Tiedje J.M. Mahenthiralingam E. Identifying the genetic basis of ecologically and biotechnologically useful functions of the bacterium Burkholderia vietnamiensis Environ. Microbiol. 2007 9 1017 1034 10.1111/j.1462-2920.2006.01228.x 17359273 · DOI
  75. [78]Mahendra S. Alvarez-Cohen L. Kinetics of 1,4-dioxane biodegradation by monooxygenase-expressing bacteria Environ. Sci. Technol. 2006 40 5435 5442 10.1021/es060714v 16999122 · DOI
  76. [79]Clay K.M.C. Fox B.G. Steffan R.J. Toluene monooxygenase-catalyzed epoxidation of alkenes Appl. Environ. Microbiol. 2000 66 1877 1882 10.1128/AEM.66.5.1877-1882.2000 10788354 PMC101427 · DOI
  77. [80]Tao Y. Fishman A. Bentley W.E. Wood T.K. Oxidation of benzene to phenol, catechol, and 1,2,3-trihydroxybenzene by toluene 4-monooxygenase of Pseudomonas mendocina KR1 and toluene 3-monooxygenase of Ralstonia pickettii PKO1 App. Environ. Microbiol. 2004 70 3814 3820 10.1128/AEM.70.7.3814-3820.2004 15240250 PMC444830 · DOI
  78. [81]Hamzah R.Y. Al-Baharna B.S. Catechol ring-cleavage in Pseudomonas cepacia: The simultaneous induction of ortho and meta pathways Appl. Microbiol. Biotechnol. 1994 41 250 256 10.1007/BF00186968 · DOI
  79. [82]Cao B. Geng A. Loh K.C. Induction of ortho and meta-cleavage pathways in Pseudomonas in biodegradation of high benzoate concentration: MS identification of catabolic enzymes Appl. Microbiol. Biotechnol. 2008 81 99 107 10.1007/s00253-008-1728-3 18836712 · DOI
  80. [83]Von Rozycki T. Nies D. Cupriavidus metallidurans: Evolution of a metal-resistant bacterium Antonie Van Leeuwenhoek 2009 96 115 139 10.1007/s10482-008-9284-5 18830684 · DOI
  81. [84]Scherer J. Nies D. CzcP is a novel efflux system contributing to transition metal resistance in Cupriavidus metallidurans CH34 Mol. Microbiol. 2009 73 601 621 10.1111/j.1365-2958.2009.06792.x 19602147 · DOI
  82. [85]Wu X. Monchy S. Taghavi S. Zhu W. Ramos J. van der Lelie D. Comparative genomics and functional analysis of niche-specific adaptation in Pseudomonas putida FEMS Microbio. Rev. 2011 35 299 323 10.1111/j.1574-6976.2010.00249.x PMC3056050 20796030 · DOI
  83. [86]Agulló L. Romero-Silva M.J. Domenech M. Seeger M. p-Cymene promotes its catabolism through the p-cymene and the p-cumate pathways, activates a stress response and reduces the biofilm formation in Burkholderia xenovorans LB400 PLoS ONE 2017 12 e0169544 10.1371/journal.pone.0169544 28072820 PMC5224996 · DOI
  84. [87]Heipieper H.J. Martínez P.M. Toxicity of hydrocarbons to microorganisms Cellular Ecophysiology of Microbe: Hydrocarbon and Lipid Interactions Krell T. Springer Berlin/Heidelberg, Germany 2018 335 344 10.1007/978-3-319-50542-8_45 · DOI
  85. [88]Nies D.H. Microbial heavy-metal resistance Appl. Microbiol. Biotechnol. 1999 51 730 750 10.1007/s002530051457 10422221 · DOI
  86. [89]Kivisaar M. The effect of cellular redox status on the evolvability of new catabolic pathways Mbio 2018 9 10 13 10.1128/mBio.01981-18 PMC6191545 30327439 · DOI
  87. [90]Horn J.M. Brunke M. Deckwer W.D. Timmis K.N. Pseudomonas putida strains which constitutively overexpress mercury resistance for biodetoxification of organomercurial pollutants Appl. Environ. Microb. 1994 60 357 362 10.1128/aem.60.1.357-362.1994 16349162 PMC201314 · DOI
  88. [91]Velázquez F. De Lorenzo V. Valls M. The m-xylene biodegradation capacity of Pseudomonas putida mt-2 is submitted to adaptation to abiotic stresses: Evidence from expression profiling of xyl genes Environ. Microbiol. 2006 8 591 602 10.1111/j.1462-2920.2005.00936.x 16584471 · DOI
  89. [92]Chillappagari S. Seubert A. Trip H. Kuipers O.P. Marahiel M.A. Miethke M. Copper stress affects iron homeostasis by destabilizing iron-sulfur cluster formation in Bacillus subtilis J. Bacteriol. 2010 192 2512 2524 10.1128/JB.00058-10 20233928 PMC2863568 · DOI
  90. [93]LaVoie S.P. Summers A.O. Transcriptional responses of Escherichia coli during recovery from inorganic or organic mercury exposure BMC Genom. 2018 19 1 24 10.1186/s12864-017-4413-z PMC5769350 29338696 · DOI
  91. [94]Li J. Ren X. Fan B. Huang Z. Wang W. Zhou H. Lou Z. Ding H. Lyu J. Tan G. Zinc toxicity and iron-sulfur cluster biogenesis in Escherichia coli Appl. Environ. Microbiol. 2019 85 1 36 10.1128/AEM.01967-18 PMC6495748 30824435 · DOI · Paper page
  92. [95]Ferianc P. Farewell A. Nyström T. The cadmium-stress stimulon of Escherichia coli K-12 Microbiology 1998 144 1045 1050 10.1099/00221287-144-4-1045 9579078 · DOI
  93. [96]Helbig K. Bleuel C. Krauss G.J. Nies D.H. Glutathione and transition-metal homeostasis in Escherichia coli J. Bacteriol. 2008 190 5431 5438 10.1128/JB.00271-08 18539744 PMC2493246 · DOI
  94. [97]Wang A. Crowley D.E. Global gene expression responses to cadmium toxicity in Escherichia coli J. Bacteriol. 2005 187 3259 3266 10.1128/JB.187.9.3259-3266.2005 15838054 PMC1082819 · DOI
  95. [98]Guzik U. Hupert-Kocurek K. Sałek K. Wojcieszyńska D. Influence of metal ions on bioremediation activity of protocatechuate 3,4-dioxygenase from Stenotrophomonas maltophilia KB2 World J. Microbiol. Biotechnol. 2012 29 267 273 10.1007/s11274-012-1178-z 23014843 PMC3543765 · DOI
  96. [99]Hupert-Kocurek K. Saczyńska A. Piotrowska-Seget Z. Cadmium increases catechol 2,3-dioxygenase activity in Variovorax sp. 12S, a metal-tolerant and phenol-degrading strain Antonie Leeuwenhoek 2013 104 845 853 10.1007/s10482-013-9997-y 23934429 · DOI
  97. [100]Lipscomb J.D. Mechanism of extradiol aromatic ring-cleaving dioxygenases Curr. Opin. Struct. Biol. 2008 18 644 649 10.1016/j.sbi.2008.11.001 19007887 PMC2614828 · DOI
  98. [101]Jindrová E. Chocová M. Demnerová K. Brenner V. Bacterial aerobic degradation of benzene, toluene, ethylbenzene and xylene Folia Microbiol. 2002 47 83 93 10.1007/BF02817664 12058403 · DOI

Cited by

Sorted by citations

Authors
Alviz-Gazitua, P., Durán, R. E., Millacura, F. A., Cárdenas, F., Rojas, L. A., & Seeger, M.
Affiliations
  • Laboratorio de Microbiología Molecular y Biotecnología Ambiental, Departamento de Química & Centro de Biotecnología, Universidad Técnica Federico Santa María, Avenida España 1680, Valparaíso 2390123, Chile
  • Universidad Técnica Federico Santa María (CL)
  • Universidad Católica del Norte (CL)
Corresponding author
Seeger, Michael
ORCID
Venue
Microorganisms
Publisher
MDPI AG
Published
2022-02-21
Volume
10
Issue
2
Pages
484
ISSN
2076-2607 (ISSN-L)
DOI
10.3390/microorganisms10020484
PMC
PMC8879955
OpenAlex
W4213046793
Cited by
22
References
1
Citations by year
2026: 8 · 2025: 5 · 2024: 3 · 2023: 4 · 2022: 2
FWCI
0.83
Type
journal article
Language
en
Open access
Licence
Locations
  • Microorganisms (publishedVersion, cc-by)
  • PubMed Central (publishedVersion, cc-by)
  • PubMed (publishedVersion)
  • DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
Funders
  • Fondecyt (1200756, 11130117)
  • ANID PIA Ring (ACT172128)
  • USM (PI_M_2020_43)
Topics
  • Physical Sciences › Environmental Science › Pollution › Microbial bioremediation and biosurfactants
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Microbial metabolism and enzyme function
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Steroid Chemistry and Biochemistry
Keywords
Cupriavidus metallidurans CH34, benzene degradation, aromatic catabolism, heavy metal co-contamination, mercury resistance, cadmium resistance, catechol 2,3-dioxygenase, catechol 1,2-dioxygenase, 2-hydroxymuconic semialdehyde, phenols, hydrocarbon bioremediation, crude oil pollution

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review