Cited by 3Porphyrin Metabolism and DisordersPhotosynthetic Processes and MechanismsPorphyrin and Phthalocyanine Chemistry

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Translational Frameshifting in the chlD Gene Gives a Clue to the Coevolution of the Chlorophyll and Cobalamin Biosyntheses

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Kuznetsov, Stepan, Milenkin, Alexander, Antonov, Ivan·2022·Microorganisms

Abstract

Today, hundreds of prokaryotic species are able to synthesize chlorophyll and cobalamin (vitamin B12). An important step in the biosynthesis of these coenzymes is the insertion of a metal ion into a porphyrin ring. Namely, Mg-chelatase ChlIDH and aerobic Co-chelatase CobNST are utilized in the chlorophyll and vitamin B12 pathways, respectively. The corresponding subunits of these enzymes have common evolutionary origin. Recently, we have identified a highly conserved frameshifting signal in the chlD gene. This unusual regulatory mechanism allowed production of both the small and the medium chelatase subunits from the same gene. Moreover, the chlD gene appeared early in the evolution and could be at the starting point in the development of the chlorophyll and B12 pathways. Here, we studied the possible coevolution of these two pathways through the analysis of the chelatase genes. To do that, we developed a specialized Web database with comprehensive information about more than 1200 prokaryotic genomes. Further analysis allowed us to split the coevolution of the chlorophyll and B12 pathway into eight distinct stages.

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Figure 1 Overview of the existing biochemical pathways that produce (Bacterio)chlorophyll, Heme, Cobalamin, and Coenzyme F430 from Uroporphyrinogen III (Uro). The magnesium-chelatase ChlIDH inserts Mg2+ ion in the Protoporphyrin IX (Proto). There are two alternative pathways to synthesize Cobalamin. The CobNST chelatase inserts Co2+ in the aerobic path. It has been suggested that ChlIDH and CobNST have common evolutionary origin.
Figure 1 Overview of the existing biochemical pathways that produce (Bacterio)chlorophyll, Heme, Cobalamin, and Coenzyme F430 from Uroporphyrinogen III (Uro). The magnesium-chelatase ChlIDH inserts Mg2+ ion in the Protoporphyrin IX (Proto). There are two alternative pathways to synthesize Cobalamin. The CobNST chelatase inserts Co2+ in the aerobic path. It has been suggested that ChlIDH and CobNST have common evolutionary origin.CC BY · PubMed Central
Figure 2 A putative chain of events that could happen between different stages during the evolution of the CHL and aerobic B12 pathways.
Figure 2 A putative chain of events that could happen between different stages during the evolution of the CHL and aerobic B12 pathways.CC BY · PubMed Central

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Metadata

Authors
Kuznetsov, S., Milenkin, A., & Antonov, I.
Affiliations
  • Moscow Institute of Physics and Technology, 141701 Dolgoprudny, Russia
  • Moscow Institute of Physics and Technology (RU)
  • National Research University Higher School of Economics (RU)
Corresponding author
Antonov, Ivan
Venue
Microorganisms
Publisher
MDPI AG
Published
2022-06-11
Volume
10
Issue
6
Pages
1200
ISSN
2076-2607 (ISSN-L)
OpenAlex
W4282600783
Cited by
3
References
1
Citations by year
2024: 2 · 2023: 1
FWCI
0.24
Type
journal article
Language
en
Open access
Locations
  • Microorganisms (publishedVersion, cc-by)
  • PubMed Central (publishedVersion, cc-by)
  • PubMed (publishedVersion)
  • DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion)
Funders
Russian Science Foundation (20-74-00128)
Topics
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Porphyrin Metabolism and Disorders
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Photosynthetic Processes and Mechanisms
  • Physical Sciences › Materials Science › Materials Chemistry › Porphyrin and Phthalocyanine Chemistry
Keywords
translational frameshifting, chlorophyll biosynthesis, vitamin B12 biosynthesis, vitamin B12, Mg-chelatase, coevolution, prokaryotic genomes, gene regulatory mechanisms

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CoChat. (2026). Citation check: Translational Frameshifting in the chlD Gene Gives a Clue to the Coevolution of the Chlorophyll and Cobalamin Biosyntheses. https://app.cochat.ai/papers/10.3390/microorganisms10061200
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Kuznetsov, S., Milenkin, A., & Antonov, I. (2022). Translational Frameshifting in the chlD Gene Gives a Clue to the Coevolution of the Chlorophyll and Cobalamin Biosyntheses. Microorganisms. https://doi.org/10.3390/microorganisms10061200