The DOI matches its OpenAlex record; 27 of the 27 references it cites were found in a registry or an index.
A five-gene phylogeny of Pezizomycotina
Abstract
Pezizomycotina is the largest subphylum of Ascomycota and includes the vast majority of filamentous, ascoma-producing species. Here we report the results from weighted parsimony, maximum likelihood and Bayesian phylogenetic analyses of five nuclear loci (SSU rDNA, LSU rDNA, RPB1, RPB2 and EF-lalpha) from 191 taxa. Nine of the 10 Pezizomycotina classes currently recognized were represented in the sampling. These data strongly supported the monophyly of Pezizomycotina, Arthoniomycetes, Eurotiomycetes, Orbiliomycetes and Sordariomycetes. Pezizomycetes and Dothideomycetes also were resolved as monophyletic but not strongly supported by the data. Lecanoromycetes was resolved as paraphyletic in parsimony analyses but monophyletic in maximum likelihood and Bayesian analyses. Leotiomycetes was polyphyletic due to exclusion of Geoglossaceae. The two most basal classes of Pezizomycotina were Orbiliomycetes and Pezizomycetes, both of which comprise species that produce apothecial ascomata. The seven remaining classes formed a monophyletic group that corresponds to Leotiomyceta. Within Leotiomyceta, the supraclass clades of Leotiomycetes s.s. plus Sordariomycetes and Arthoniomycetes plus Dothideomycetes were resolved with moderate support.
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
RAxML-III: a fast program for maximum likelihood-based inference of large phylogenetic trees
Stamatakis, A., Ludwig, T., & Meier, H. (2005) · Bioinformatics · doi:10.1093/bioinformatics/bti191 · Cited by 1,438
Assembling the fungal tree of life: progress, classification, and evolution of subcellular traits
Lutzoni, F., Kauff, F., Cox, C. J., McLaughlin, D., Celio, G., Dentinger, B., Padamsee, M., Hibbett, D., James, T. Y., Baloch, E., et al. (2004) · American Journal of Botany · doi:10.3732/ajb.91.10.1446 · Cited by 816
Self-citationAinsworth and Bisby's Dictionary of the Fungi
Hawksworth, D. L., Kirk, P. M., Sutton, B. C., & Pegler, D. N. (1971) · Cited by 633
Reeb, V., Lutzoni, F., & Roux, C. (2004) · Molecular Phylogenetics and Evolution · doi:10.1016/j.ympev.2004.04.012 · Cited by 530
Self-citationMajor fungal lineages are derived from lichen symbiotic ancestors
Lutzoni, F., Pagel, M., & Reeb, V. (2001) · Nature · doi:10.1038/35082053 · Cited by 496
Self-citationComparative morphology and biology of the fungi, mycetozoa and bacteria
Bary, A. D., Balfour, I. B., & Garnsey, H. E. F. (1887) · Clarendon Press eBooks · doi:10.5962/bhl.title.56861 · Cited by 372
Animal Evolution and the Molecular Signature of Radiations Compressed in Time
Rokas, A., Krüger, D., & Carroll, S. B. (2005) · Science · doi:10.1126/science.1116759 · Cited by 372
Studien über die Morphologie und Systematik der nicht-lichenisierten inoperculaten Discomyceten
Nannfeldt, J. A. (1932) · Cited by 319
Morphology and taxonomy of fungi
Bessey, E. A. (1950) · Blakiston eBooks · doi:10.5962/bhl.title.5663 · Cited by 300
(1952) · AIBS Bulletin · doi:10.1093/aibsbulletin/2.3.11 · Cited by 273
Cited by
Maharachchikumbura, S. S. N., Hyde, K. D., Jones, E. B. G., McKenzie, E. H. C., Bhat, J. D., Dayarathne, M. C., Huang, S.-K., Norphanphoun, C., Senanayake, I. C., Perera, R. H., et al. (2016) · Fungal Diversity · doi:10.1007/s13225-016-0369-6 · Cited by 439
Irinyi, L., Serena, C., Garcia-Hermoso, D., Arabatzis, M., Desnos-Ollivier, M., Vu, D., Cardinali, G., Arthur, I., Normand, A.-C., Giraldo, A., et al. (2015) · Medical Mycology · doi:10.1093/mmy/myv008 · Cited by 329
Self-citationRéblová, M., Gams, W., & Seifert, K. A. (2011) · Studies in Mycology · doi:10.3114/sim.2011.68.07 · Cited by 188
Metadata
- Authors
- Spatafora, J. W., Sung, G., Johnson, D., Hesse, C. N., O'Rourke, B., Serdani, M., Spotts, R. A., Lutzoni, F. M., Hofstetter, V., Miądlikowska, J., Reeb, V., Gueidan, C., Fraker, E., Lumbsch, T. H., Lücking, R., Schmitt, I., Hosaka, K., Aptroot, A., Roux, C., Miller, A. N., Geiser, D. M., Hafellner, J., Hestmark, G., Arnold, A. E., Büdel, B., Rauhut, A., Hewitt, D., Untereiner, W. A., Cole, M. S., Scheidegger, C., Schultz, M., Sipman, H. J. M., & Schoch, C. L.
- Venue
- Mycologia
- Publisher
- Taylor & Francis
- Published
- 2006-11-01
- Volume
- 98
- Issue
- 6
- Pages
- 1018-1028
- ISSN
- 0027-5514 (ISSN-L)
- OpenAlex
- W2155113087
- Cited by
- 316
- References
- 27
- FWCI
- 6.24
- Type
- journal article
- Language
- es
- Open access
- closed
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review
How to cite
Cite CoChat for the checks on this page, and the paper for its own findings.
- This page
- CoChat. (2026). Citation check: A five-gene phylogeny of Pezizomycotina. https://app.cochat.ai/papers/10.3852/mycologia.98.6.1018
- The paper
- Spatafora, J. W., Sung, G., Johnson, D., Hesse, C. N., O'Rourke, B., Serdani, M., Spotts, R. A., Lutzoni, F. M., Hofstetter, V., Miądlikowska, J., Reeb, V., Gueidan, C., Fraker, E., Lumbsch, T. H., Lücking, R., Schmitt, I., Hosaka, K., Aptroot, A., Roux, C., . . . Schoch, C. L. (2006). A five-gene phylogeny of Pezizomycotina. Mycologia. https://doi.org/10.3852/mycologia.98.6.1018
Data sources
Bibliographic data: Semantic Scholar, OpenAlex, Crossref.
Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.
