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Identification of an Autophagy Defect in Smokers’ Alveolar Macrophages
Abstract
Alveolar macrophages are essential for clearing bacteria from the alveolar surface and preventing microbe-induced infections. It is well documented that smokers have an increased incidence of infections, in particular lung infections. Alveolar macrophages accumulate in smokers’ lungs, but they have a functional immune deficit. In this study, we identify an autophagy defect in smokers’ alveolar macrophages. Smokers’ alveolar macrophages accumulate both autophagosomes and p62, a marker of autophagic flux. The decrease in the process of autophagy leads to impaired protein aggregate clearance, dysfunctional mitochondria, and defective delivery of bacteria to lysosomes. This study identifies the autophagy pathway as a potential target for interventions designed to decrease infection rates in smokers and possibly in individuals with high environmental particulate exposure.
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“SQSTM1 is also a substrate for CASP6 (caspase 6) and CASP8 (as well as CAPN1 [calpain 1]), which may confound its use in examining cell death and autophagy [608].”
From Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition) 1 (2021) · cites this paper as [608]
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Cites
Autophagy in the Pathogenesis of Disease
Levine, B., & Kroemer, G. (2008) · Cell · doi:10.1016/j.cell.2007.12.018 · Cited by 7,069
Autophagy fights disease through cellular self-digestion
Mizushima, N., Levine, B., Cuervo, A. M., & Klionsky, D. J. (2008) · Nature · doi:10.1038/nature06639 · Cited by 6,452
Pankiv, S., Clausen, T. H., Lamark, T., Brech, A., Bruun, J.-A., Outzen, H., Øvervatn, A., Bjørkøy, G., & Johansen, T. (2007) · Journal of Biological Chemistry · doi:10.1074/jbc.m702824200 · Cited by 4,578
Parkin is recruited selectively to impaired mitochondria and promotes their autophagy
Narendra, D., Tanaka, A., Suen, D.-F., & Youle, R. J. (2008) · The Journal of Cell Biology · doi:10.1083/jcb.200809125 · Cited by 4,026
Gutierrez, M. G., Master, S. S., Singh, S. B., Taylor, G. A., Colombo, M. I., & Deretic, V. (2004) · Cell · doi:10.1016/j.cell.2004.11.038 · Cited by 2,252
Selective degradation of mitochondria by mitophagy
Kim, I., Rodriguez-Enriquez, S., & Lemasters, J. J. (2007) · Archives of Biochemistry and Biophysics · doi:10.1016/j.abb.2007.03.034 · Cited by 1,558
Nix is a selective autophagy receptor for mitochondrial clearance
Novak, I., Kirkin, V., McEwan, D. G., Zhang, J., Wild, P., Rozenknop, A., Rogov, V., Löhr, F., Popovic, D., Occhipinti, A., et al. (2010) · The EMBO Reports · doi:10.1038/embor.2009.256 · Cited by 1,309 · cited 1×
“Nix forms a complex with LC3 and GABARAP-L1 that mediates mitochondrial clearance (55).”
BackgroundTravassos, L. H., Carneiro, L. A. M., Ramjeet, M., Hussey, S., Kim, Y.-G., Magalhães, J. G., Yuan, L., Soares, F., Chea, E., Le Bourhis, L., et al. (2010) · Nature Immunology · doi:10.1038/ni.1823 · Cited by 1,306
Mitophagy in Yeast Occurs through a Selective Mechanism
Kanki, T., & Klionsky, D. J. (2008) · Journal of Biological Chemistry · doi:10.1074/jbc.m802403200 · Cited by 335
Cigarette smoke induces cellular senescence
Nyunoya, T., Monick, M. M., Klingelhutz, A., Yarovinsky, T. O., Cagley, J. R., & Hunninghake, G. W. (2006) · American Journal of Respiratory Cell and Molecular Biology · doi:10.1165/rcmb.2006-0169oc · Cited by 306
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Flagged first, then by citations
Research works printed but not linked: 49
- Niewoehner, 1974, Pathologic changes in the peripheral airways of young cigarette smokers, N. Engl. J. Med., 291, 755, 10.1056/NEJM197410102911503 · DOI
- Green, 1968, Cigarette smoke: protection of alveolar macrophages by glutathione and cysteine, Science, 162, 810, 10.1126/science.162.3855.810 · DOI
- Laurenzi, 1963, Clearance of bacteria by the lower respiratory tract, Science, 142, 1572, 10.1126/science.142.3599.1572 · DOI
- Klionsky, 2000, Autophagy as a regulated pathway of cellular degradation, Science, 290, 1717, 10.1126/science.290.5497.1717 · DOI
- Chen, 2008, Egr-1 regulates autophagy in cigarette smoke-induced chronic obstructive pulmonary disease, PLoS One, 3, e3316, 10.1371/journal.pone.0003316 · DOI · Paper page
- Kim, 2008, Autophagic proteins regulate cigarette smoke-induced apoptosis: protective role of heme oxygenase-1, Autophagy, 4, 887, 10.4161/auto.6767 · DOI
- Nuorti, 2000, Cigarette smoking and invasive pneumococcal disease, N. Engl. J. Med., 342, 681, 10.1056/NEJM200003093421002 · DOI
- Drannik, 2004, Impact of cigarette smoke on clearance and inflammation after Pseudomonas aeruginosa infection, Am. J. Respir. Crit. Care Med., 170, 1164, 10.1164/rccm.200311-1521OC · DOI
- Ju, 2009, Quantitation of selective autophagic protein aggregate degradation in vitro and in vivo using luciferase reporters, Autophagy, 5, 511, 10.4161/auto.5.4.7761 · DOI · Paper page
- Monick, 1999, Human alveolar macrophages are markedly deficient in REF-1 and AP-1 DNA binding activity, J. Biol. Chem., 274, 18075, 10.1074/jbc.274.25.18075 · DOI
- Nyunoya, 2009, Cigarette smoke induces cellular senescence via Werner’s syndrome protein down-regulation, Am. J. Respir. Crit. Care Med., 179, 279, 10.1164/rccm.200802-320OC · DOI · Paper page
- Blue, 1978, Possible mechanisms of emphysema in cigarette smokers. Release of elastase from human polymorphonuclear leukocytes by cigarette smoke condensate in vitro, Am. Rev. Respir. Dis., 117, 317
- Panayiotidis, 2004, Cigarette smoke extract increases S-adenosylmethionine and cystathionine in human lung epithelial-like (A549) cells, Chem. Biol. Interact., 147, 87, 10.1016/j.cbi.2003.10.009 · DOI
- Carnevali, 2003, Cigarette smoke extract induces oxidative stress and apoptosis in human lung fibroblasts, Am. J. Physiol. Lung Cell. Mol. Physiol., 284, L955, 10.1152/ajplung.00466.2001 · DOI
- Hansdottir, 2008, Respiratory epithelial cells convert inactive vitamin D to its active form: potential effects on host defense, J. Immunol., 181, 7090, 10.4049/jimmunol.181.10.7090 · DOI
- Monick, 2008, Constitutive ERK MAPK activity regulates macrophage ATP production and mitochondrial integrity, J. Immunol., 180, 7485, 10.4049/jimmunol.180.11.7485 · DOI
- Klionsky, 2008, Guidelines for the use and interpretation of assays for monitoring autophagy in higher eukaryotes, Autophagy, 4, 151, 10.4161/auto.5338 · DOI · Paper page
- Mizushima, 2010, Methods in mammalian autophagy research, Cell, 140, 313, 10.1016/j.cell.2010.01.028 · DOI · Paper page
- Ding, 2010, Autophagy reduces acute ethanol-induced hepatotoxicity and steatosis in mice, Gastroenterology, 10.1053/j.gastro.2010.07.041 · DOI · Paper page
- Ogier-Denis, 1996, Guanine nucleotide exchange on heterotrimeric Gi3 protein controls autophagic sequestration in HT-29 cells, J. Biol. Chem., 271, 28593, 10.1074/jbc.271.45.28593 · DOI
- Komatsu, 2010, The selective autophagy substrate p62 activates the stress responsive transcription factor Nrf2 through inactivation of Keap1, Nat. Cell Biol., 12, 213, 10.1038/ncb2021 · DOI · Paper page
- Moscat, 2009, To aggregate or not to aggregate? A new role for p62, EMBO Rep., 10, 804, 10.1038/embor.2009.172 · DOI
- Moscat, 2009, p62 at the crossroads of autophagy, apoptosis, and cancer, Cell, 137, 1001, 10.1016/j.cell.2009.05.023 · DOI · Paper page
- Ponpuak, 2010, Delivery of cytosolic components by autophagic adaptor protein p62 endows autophagosomes with unique antimicrobial properties, Immunity, 32, 329, 10.1016/j.immuni.2010.02.009 · DOI
- Kirkin, 2009, A role for ubiquitin in selective autophagy, Mol. Cell, 34, 259, 10.1016/j.molcel.2009.04.026 · DOI
- Moscat, 2006, Cell signaling and function organized by PB1 domain interactions, Mol. Cell, 23, 631, 10.1016/j.molcel.2006.08.002 · DOI
- Kim, 2008, Ubiquitin signals autophagic degradation of cytosolic proteins and peroxisomes, Proc. Natl. Acad. Sci. USA, 105, 20567, 10.1073/pnas.0810611105 · DOI
- Olzmann, 2007, Parkin-mediated K63-linked polyubiquitination targets misfolded DJ-1 to aggresomes via binding to HDAC6, J. Cell Biol., 178, 1025, 10.1083/jcb.200611128 · DOI
- Tan, 2008, Lysine 63-linked ubiquitination promotes the formation and autophagic clearance of protein inclusions associated with neurodegenerative diseases, Hum. Mol. Genet., 17, 431, 10.1093/hmg/ddm320 · DOI
- Wooten, 2008, Essential role of sequestosome 1/p62 in regulating accumulation of Lys63-ubiquitinated proteins, J. Biol. Chem., 283, 6783, 10.1074/jbc.M709496200 · DOI
- Hemelaar, 2004, Specific and covalent targeting of conjugating and deconjugating enzymes of ubiquitin-like proteins, Mol. Cell. Biol., 24, 84, 10.1128/MCB.24.1.84-95.2004 · DOI
- Hochstrasser, 2000, Biochemistry. All in the ubiquitin family, Science, 289, 563, 10.1126/science.289.5479.563 · DOI
- Hochstrasser, 2000, Evolution and function of ubiquitin-like protein-conjugation systems, Nat. Cell Biol., 2, E153, 10.1038/35019643 · DOI
- Ulrich, 2008, The fast-growing business of SUMO chains, Mol. Cell, 32, 301, 10.1016/j.molcel.2008.10.010 · DOI
- Mathew, 2009, Autophagy suppresses tumorigenesis through elimination of p62, Cell, 137, 1062, 10.1016/j.cell.2009.03.048 · DOI
- Deretic, 2009, Autophagy, immunity, and microbial adaptations, Cell Host Microbe, 5, 527, 10.1016/j.chom.2009.05.016 · DOI
- Levine, 2005, Eating oneself and uninvited guests: autophagy-related pathways in cellular defense, Cell, 120, 159
- Jia, 2009, Autophagy genes protect against Salmonella typhimurium infection and mediate insulin signaling-regulated pathogen resistance, Proc. Natl. Acad. Sci. USA, 106, 14564, 10.1073/pnas.0813319106 · DOI
- Virgin, 2009, Autophagy genes in immunity, Nat. Immunol., 10, 461, 10.1038/ni.1726 · DOI
- Qu, 2007, Autophagy gene-dependent clearance of apoptotic cells during embryonic development, Cell, 128, 931, 10.1016/j.cell.2006.12.044 · DOI
- Montgomery, 1991, Accumulation of indigestible substances reduces fusion competence of macrophage lysosomes, J. Immunol., 147, 3087, 10.4049/jimmunol.147.9.3087 · DOI
- Korolchuk, 2009, Autophagy inhibition compromises degradation of ubiquitin-proteasome pathway substrates, Mol. Cell, 33, 517, 10.1016/j.molcel.2009.01.021 · DOI · Paper page
- Ivanov, 2009, NDP52: the missing link between ubiquitinated bacteria and autophagy, Nat. Immunol., 10, 1137, 10.1038/ni1109-1137 · DOI
- Elmore, 2001, The mitochondrial permeability transition initiates autophagy in rat hepatocytes, FASEB J., 15, 2286, 10.1096/fj.01-0206fje · DOI
- Vives-Bauza, 2010, PINK1-dependent recruitment of Parkin to mitochondria in mitophagy, Proc. Natl. Acad. Sci. USA, 107, 378, 10.1073/pnas.0911187107 · DOI · Paper page
- Deretic, 2010, Autophagy in infection, Curr. Opin. Cell Biol., 22, 252, 10.1016/j.ceb.2009.12.009 · DOI
- Yoshikawa, 2009, Listeria monocytogenes ActA-mediated escape from autophagic recognition, Nat. Cell Biol., 11, 1233, 10.1038/ncb1967 · DOI
- Zheng, 2009, The adaptor protein p62/SQSTM1 targets invading bacteria to the autophagy pathway, J. Immunol., 183, 5909, 10.4049/jimmunol.0900441 · DOI
- Le, 2009, Pulmonary epithelial neuropilin-1 deletion enhances development of cigarette smoke-induced emphysema, Am. J. Respir. Crit. Care Med., 180, 396, 10.1164/rccm.200809-1483OC · DOI
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Self-citationGuidelines for the use and interpretation of assays for monitoring autophagy (4th edition) 1
Klionsky, D. J., Abdel-Aziz, A. K., Abdelfatah, S., Abdellatif, M., Abdoli, A., Abel, S., Abeliovich, H., Abildgaard, M. H., Abudu, Y. P., Acevedo-Arozena, A., et al. (2021) · Autophagy · doi:10.1080/15548627.2020.1797280 · Cited by 2,897
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The Continuum of Aging and Age-Related Diseases: Common Mechanisms but Different Rates
Franceschi, C., Garagnani, P., Morsiani, C., Conte, M., Santoro, A., Grignolio, A., Monti, D., Capri, M., & Salvioli, S. (2018) · Frontiers in Medicine · doi:10.3389/fmed.2018.00061 · Cited by 945
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Metadata
- Authors
- Monick, M. M., Powers, L. S., Walters, K., Lovan, N., Zhang, M., Gerke, A., Hansdottir, S., & Hunninghake, G. W.
- Affiliations
- Department of Medicine, Carver College of Medicine , Iowa City, IA 52242
- Office of the Vice President for Research, University of Iowa , Iowa City, IA 52242
- Venue
- The Journal of Immunology
- Publisher
- Oxford University Press (OUP)
- Published
- 2010-11-01
- Volume
- 185
- Issue
- 9
- Pages
- 5425-5435
- ISSN
- 0022-1767
- 1550-6606
- PMC
- PMC3057181
- Cited by
- 214
- References
- 10
- Language
- en
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