Active site and allosteric inhibitors of the ribonuclease H activity of HIV reverse transcriptase
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Despite the wealth of information available for the reverse transcriptase (RT)-associated ribonuclease H (RNaseH) domain of lentiviruses, gammaretroviruses and long terminal repeat containing retrotransposons, exploiting this information in the form of an RNaseH inhibitor with high specificity and low cellular toxicity has been disappointing. However, it is now becoming increasingly evident that the two-subunit HIV-1 RT is a highly versatile enzyme, undergoing major structural alterations in order to interact with, position and ultimately hydrolyze the RNA component of an RNA/DNA hybrid. Thus, in addition to targeting the RNaseH active site, identifying small molecules that bind elsewhere and disrupt catalysis allosterically by impairing conformational flexibility is gaining increased attention. This review summarizes current progress towards development of both active site and allosteric RNaseH inhibitors.
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Several pharmacophores for ribonuclease H active-site inhibitors are diketo acid, N-hydroxyimide, hydroxytropolone, pyrimidinol carboxylic acid, N-hydroxy naphthyridinone, pyrido-pyrimidinone, nitrofuran-2-carboxylic acid, and thiocarbamates.
“Several pharmacophores for RNH active site inhibitors are: diketo acid, N-hydroxyimide, hydroxytropolone, pyrimidinol carboxylic acid, N-hydroxy naphthyridinone, pyrido-pyrimidinone, nitrofuran-2-carboxylic acid and thiocarbamates [31,32].”
From Retroviral RNase H: structure, mechanism, and inhibition (2021) · cites this paper as [32]
The Metal-chelating active site inhibitors sections discuss diketo acids, N-hydroxyimides, hydroxytropolones, pyrimidinol carboxylic acids, N-hydroxynaphthyridinones, nitrofuran derivatives, and thiocarbamates. The copy does not identify a pyrido-pyrimidinone active-site inhibitor; it instead discusses thienopyrimidinones under Allosteric RNaseH inhibitors. Page numbers were not available in the indexed passages. (LLM, conf=0.88)
Experimental — accuracy not yet measuredSignificant progress has been made in developing active-site ribonuclease H inhibitors.
“During the past several years, significant progress has been made in the development of active-site RNH inhibitors [32-35].”
From Retroviral RNase H: structure, mechanism, and inhibition (2021) · cites this paper as [32]
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Studies Toward a General Synthesis of Poly-Substituted Alpha-Hydroxytropolones
Meck, C. (2015) · CUNY Academic Works (City University of New York)
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BindingDB (2017) · UC San Diego · doi:10.7270/q2n29vs8
BindingDB Entry 7319: Inhibition of HIV-1 Reverse Transcriptase Dimerization by Small Molecules.
BindingDB (2016) · UC San Diego · doi:10.7270/q25h7f28
- Authors
- Corona, A., Masaoka, T., Tocco, G., Tramontano, E., & Le Grice, S. F.
- Affiliations
- University of Cagliari (IT)
- National Cancer Institute (US)
- RT Biochemistry Section, HIV Drug Resistance Program, National Cancer Institute, Frederick, MD21702, USA
- Venue
- Future Medicinal Chemistry
- Publisher
- Informa UK Limited
- Published
- 2013-11-21
- Volume
- 5
- Issue
- 18
- Pages
- 2127-2139
- ISSN
- 1756-8919 (ISSN-L)
- 1756-8927
- PMC
- PMC6310216
- OpenAlex
- W2024192530
- Cited by
- 54
- References
- 61
- Citations by year
- 2026: 1 · 2025: 4 · 2024: 3 · 2023: 3 · 2021: 6 · 2020: 8 · 2019: 4 · 2018: 4 · 2017: 5 · 2016: 9 · 2015: 3 · 2014: 4
- FWCI
- 0.82
- Type
- journal article
- Language
- en
- Open access
- green
- europepmc.org
- Locations
- Future Medicinal Chemistry (publishedVersion)
- PubMed (publishedVersion)
- Europe PMC (PubMed Central) (acceptedVersion)
- PubMed Central (acceptedVersion)
- UNICA IRIS Institutional Research Information System (University of Cagliari) (submittedVersion)
- Funders
- Ministero dell ‘Universita, dell’ Istruzione e della Ricerca (LR 7/2007 CRP-24915 and MIUR PRIN 2012)
- Topics
- Health Sciences › Medicine › Infectious Diseases › HIV/AIDS drug development and treatment
- Life Sciences › Immunology and Microbiology › Virology › HIV Research and Treatment
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Biochemical and Molecular Research
- Keywords
- HIV-1 reverse transcriptase, RNase H, allosteric inhibitors, active-site-directed inhibitors, conformational flexibility, lentivirus, gammaretrovirus, retrotransposons, small molecule inhibitors
- MeSH terms
- Allosteric Regulation, Enzyme Inhibitors, Hydrolysis, Ribonuclease H, Catalytic Domain, HIV Reverse Transcriptase
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