To be or not to be? Examples of incorrect identification of autophagic compartments in conventional transmission electron microscopy of mammalian cells

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Items 101–197 of 197

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4. Differential induction of autophagy in caspase-3/7 down-regulating and Bcl-2 overexpressing recombinant CHO cells subjected to sodium butyrate treatment
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5. Role of Mitophagy in the Pathogenesis of Stroke: From Mechanism to Therapy
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7. Repeated Silica exposures lead to Silicosis severity via PINK1/PARKIN mediated mitochondrial dysfunction in mice model
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8. Apoptosis-Like Cell Death Induction and Aberrant Fibroblast Properties in Human Incisional Hernia Fascia
   Ramón Díaz, Maite Quiles, Jordi Guillem‐Marti, Manuel López Cano, Pere Huguet, Santiago Ramón y Cajal, Jaume Reventós, Manel Armengol, Maria Antonia Arbos · 2011 · American Journal Of Pathology
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   Ann M. G. L. De Mazière, Jan van der Beek, Suzanne van Dijk, Cecilia de Heus, Fulvio Reggiori, Masato Koike, Judith Klumperman · 2022 · Autophagy
10. Real-time tracking of the autophagy process in living cells using plasmonically enhanced Raman spectroscopy of fucoidan-coated gold nanoparticles
    Hongje Jang, Kyungtae Kang, Mostafa A. El‐Sayed · 2018 · Journal of Materials Chemistry B
11. The Role of Macroautophagy and Chaperone-Mediated Autophagy in the Pathogenesis and Management of Hepatocellular Carcinoma
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12. Monitoring basal autophagy in the retina utilizing CAG-mRFP-EGFP-MAP1LC3B reporter mouse: technical and biological considerations
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13. Endoplasmic reticulum‐stress and unfolded protein response‐activation in immune‐mediated necrotizing myopathy
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14. Cyclosporine A prevents ex vivo PCO formation through induction of autophagy-mediated cell death
    Heather Lynn Chandler, Kristen J. Gervais, Elizabeth A. Lutz, Elizabeth M. Curto, Rachel B. Matusow, David A. Wilkie, Anne J. Gemensky‐Metzler · 2015 · Experimental Eye Research
15. Marine-derived fungi extracts enhance the cytotoxic activity of doxorubicin in nonsmall cell lung cancer cells A459
    Eduardo Rocha, Bruno Castro‐Carvalho, AliceA Ramos, Maria Prata‐Sena, Fernanda Malhão, Márcia Moreira, Daniela Gargiulo, Tida Dethoup, Suradet Buttachon, Anake Kijjoa · 2017 · Pharmacognosy Research
16. High-Throughput Quantitative Detection of Basal Autophagy and Autophagic Flux Using Image Cytometry
    Gopika SenthilKumar, Justin H. Skiba, Randall J. Kimple · 2019 · BioTechniques
17. Fluid shear stress induces cell migration via RhoA-YAP1-autophagy pathway in liver cancer stem cells
    Zhiping Yan, Danfeng Guo, Ruolin Tao · 2022 · Cell Adhesion & Migration
18. DGAT1 deficiency disrupts lysosome function in enterocytes during dietary fat absorption
    Yu-Han Hung, Kimberly K. Buhman · 2018 · Biochimica et Biophysica Acta (BBA) - Molecular and Cell Biology of Lipids
19. Autophagy, lysosome dysfunction and mTOR inhibition in MNU-induced photoreceptor cell damage
    Ying Li, Chenguang Wang, Yang Liu, Jiaxin You, Guanfang Su · 2019 · Tissue and Cell
20. Perfluorooctanoic Acid Exposure Assessment on Common Carp Liver through Image and Ultrastructural Investigation
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21. Autophagy-Associated Immunogenic Modulation and Its Applications in Cancer Therapy
    Zhuxi Duan, Yu Shi, Qun Lin, Ahmed Hamaï, Maryam Mehrpour, Chang Gong · 2022 · Cells
22. Autophagic activity in BC3H1 cells exposed to yessotoxin
    Mónica Suárez Korsnes, Hilde Kolstad, Charlotte Ramstad Kleiveland, Reinert Korsnes, Elin Ørmen · 2015 · Toxicology in Vitro
23. Design and Evaluation of Autophagy-Inducing Particles for the Treatment of Abnormal Lipid Accumulation
    Stavroula Zagkou, Valentine Marais, Narimane Zeghoudi, Édouard Le Guillou, Eeva‐Liisa Eskelinen, Ganna Panasyuk, Bernard Verrier, Charlotte Primard · 2022 · Pharmaceutics
24. Genetic loss-of-function of activating transcription factor 3 but not C-type lectin member 5A prevents diabetic peripheral neuropathy
    Hung‐Wei Kan, Chin-Hong Chang, Ying‐Shuang Chang, Yi-Ting Ko, Yu‐Lin Hsieh · 2021 · Laboratory Investigation
25. Non-degradable autophagic vacuoles are indispensable for cell competition
    Eilma Akter, Yukihiro Tasaki, Yusuke Mori, Kazuki Nakai, Kazuki Hachiya, Hancheng Lin, Masamitsu Konno, Tomoko Kamasaki, Kenji Tanabe, Yumi Umeda et al. · 2022 · Cell Reports
26. Determination of mitophagy by electron microscope
    Zhiyu Li, Qi Wu, Liu Le, Si Sun, Shengrong Sun, Zhong Wang, Juanjuan Li · 2020 · Methods in cell biology
27. Activation of autophagic pathways is related to growth inhibition and senescence in cutaneous squamous cell carcinoma
    So-Ra Choi, Bo Young Chung, Seong Who Kim, Chang Deok Kim, Woo Jin Yun, Mi Woo Lee, Jee Ho Choi, Sung Eun Chang · 2014 · Experimental Dermatology
28. Activation of the macroautophagy pathway byYersinia enterocoliticapromotes intracellular multiplication and egress of yersiniae from epithelial cells
    María José Valencia López, Hanna Schimmeck, Julia Gropengießer, Lukas Middendorf, Melanie Quitmann, Carola Schneider, Barbara Holstermann, Rahel Wacker, Volker Theo Heussler, Rudolph Reimer et al. · 2019 · Cellular Microbiology
29. An mTOR-independent Macroautophagy Activator Ameliorates Tauopathy and Prionopathy Neurodegeneration Phenotypes
    Leonard Yoon, Rachel C. Botham, Adriaan Verhelle, Yin Wu, Christian M. Cole, Ee Phie Tan, Lynée A. Massey, Pablo Sanz-Martinez, Ching‐Chieh Chou, Jin Xu et al. · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
30. ROS-induced moderate autophagy of haemocytes confers resistance of Mercenaria mercenaria to air exposure stress
    Cong Zhou, Yan Zou, Zhi Hu, Mei‐Jie Yang, Shi Pu, Yongren Li, Yongjun Guo, Tao Zhang, Hao Song · 2023 · Fish & Shellfish Immunology
31. Traumatic brain injury in the presence of Aβ pathology affects neuronal survival, glial activation and autophagy
    Linn Streubel-Gallasch, Marlena Zyśk, Chiara Beretta, Anna Erlandsson · 2021 · Scientific Reports
32. An Experimental Study Reveals the Protective Effect of Autophagy against Realgar-Induced Liver Injury via Suppressing ROS-Mediated NLRP3 Inflammasome Pathway
    Jing Yang, Jian Li, Haoqi Guo, Yuwei Zhang, Ziwei Guo, Yu Liu, Taoguang Huo · 2022 · International Journal of Molecular Sciences
33. Endoplasmic reticulum stress triggers unfolded protein response as an antiviral strategy of teleost erythrocytes
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34. Tracking cellular uptake, intracellular trafficking and fate of nanoclay particles in human bone marrow stromal cells
    Mohamed Mousa, Yang‐Hee Kim, Nicholas D. Evans · 2023 · Nanoscale
35. Roles of Neuronal Protein Kinase Cε on Endoplasmic Reticulum Stress and Autophagic Formation in Diabetic Neuropathy
    Yu‐Yu Kan, Ying‐Shuang Chang, Wen-Chieh Liao, Tzu-Ning Chao, Yu‐Lin Hsieh · 2023 · Molecular Neurobiology
36. Histologic Evidence of Epithelial–Mesenchymal Transition and Autophagy in Human Fetal Membranes
    Mary Elise L. Severino, Lauren Richardson, Marián Kacerovský, Ramkumar Menon · 2024 · American Journal Of Pathology
37. The short life of the Hoyle organ of Sepia officinalis: formation, differentiation and degradation by programmed cell death
    Norbert Cyran, Anna Palumbo, Waltraud Klepal, Érica Alves González Vidal, Yannick M. Staedler, Jürg Schönenberger, Janek von Byern · 2017 · Hydrobiologia
38. Autophagic flux in glioblastoma cells
    Linda S. Yasui, Maria del Pilar Ayuda Duran, Christine Andorf · 2016 · International Journal of Radiation Biology
39. A Method for In Vivo Induction and Ultrastructural Detection of Mitophagy in Sertoli Cells
    Nabil A. S. Eid, Yuko Ito, Akio Horibe · 2018 · Methods in molecular biology
40. Fluorescent Reporters, Imaging, and Artificial Intelligence Toolkits to Monitor and Quantify Autophagy, Heterophagy, and Lysosomal Trafficking Fluxes
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41. The morphological analysis of autophagy in primary skeletal muscle cells infected with Toxoplasma gondii
    Xênia Macedo Souto, Helene Santos Barbosa, Rubem F. S. Menna‐Barreto · 2016 · Parasitology Research
42. Techniques for the Detection of Autophagy in Primary Mammalian Cells
    Daniel J. Puleston, Kanchan Phadwal, Alexander Watson · 2015 · Cold Spring Harbor Protocols
43. Unraveling the ultrastructure and dynamics of autophagic vesicles: Insights from advanced imaging techniques
    Ting Jiang, Chaoye Ma, Hao Chen · 2024 · FASEB BioAdvances
44. Maintenance and Decline of Neuronal Lysosomal Function in Aging
    Ruiling Zhong, Claire E. Richardson · 2025 · Cells
45. Self-eating and Heart: The Emerging Roles of Autophagy in Calcific Aortic Valve Disease
    Yunlong Fan, Jiakang Shao, Shixiong Wei, Chao Song, Yanan Li, Shengli Jiang · 2021 · Aging and Disease
46. Oxidative stress‐mediated autophagic cell death participates in the neurotoxic effect on SH‐SY5Y cells induced by excessive iodide
    Hongliang Liu, Lingzhi Wang, Qiang Zeng, Liang Zhao, Yushan Cui, Changchun Hou, Bin Zhang, Zushan Zhang, Shun Zhang, Xuemin Chen et al. · 2018 · Environmental Toxicology
47. Combined inhibition of apoptosis and necrosis promotes transient neuroprotection of retinal ganglion cells and partial-axon regeneration after optic nerve damage
    Maki Kayama, Kumiko Omura, Yusuke Murakami, Edith R. Reshef, Aristomenis Thanos, Yuki Morizane, Andrea Giani, Toru Nakazawa, Joan W. Miller, Larry I. Benowitz et al. · 2018 · bioRxiv (Cold Spring Harbor Laboratory)
48. Autophagy in kidney transplants of sirolimus treated recipients
    Sagar Bhayana, Arpita Baisantry, Thomas Daniel Kraemer, Christoph Wrede, Jan Hegermann, Jan Hinrich Bräsen, Clemens Luitpold Bockmeyer, Jan Ulrich Becker, Matthias Ochs, Wilfried Gwinner et al. · 2016 · Journal of Nephropathology
49. Metformin rescues migratory deficits of cells derived from patients with periventricular heterotopia
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50. Reticulon-dependent ER-phagy mediates adaptation to heat stress in C. elegans
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51. Detection of autophagy-related structures in fruiting bodies of edible mushroom, Pleurotus ostreatus
    Yuma Ozaki, Tadanori Aimi, Norihiro Shimomura · 2022 · Microscopy
52. A Simple Method to Estimate the Number of Autophagic Elements by Electron Microscopic Morphometry in Real Cellular Dimensions
    Kovács, Attila L. · 2014 · BioMed Research International
53. Simultaneously Monitoring Multiple Autophagic Processes and Assessing Autophagic Flux in Single Cells by In Situ Fluorescence Cross-Correlation Spectroscopy
    Haohan Song, Chaoqing Dong, Jicun Ren · 2024 · Analytical Chemistry
54. The Knowns and Unknowns of Membrane Features and Changes During Autophagosome–Lysosome/Vacuole Fusion
    Jinmeng Liu, Hui Ma, Zulin Wu, Yanling Ji, Yongheng Liang · 2024 · International Journal of Molecular Sciences
55. Patterns of Apoptosis and Autophagy Activation After Hydroxyurea Exposure in the Rat Cerebellar External Granular Layer: an Immunoperoxidase and Ultrastructural Analysis
    Vanessa Molina, Lucía Rodríguez‐Vázquez, Joaquı́n Martı́ · 2019 · Neurotoxicity Research
56. Autophagy-related 16-like 1gene polymorphism, risk factors for cardiovascular disease and associated carotid intima-media thickness in postmenopausal women
    Cláudio Lera Orsatti, Marcone Lima Sobreira, Valéria C. Sandrim, Jorge Nahás-Neto, Fábio Lera Orsatti, Eliana Aguiar Petri Nahás · 2018 · Clinical Biochemistry
57. Locus coeruleus-hippocampus noradrenergic activation alleviates sepsis-associated encephalopathy by promoting astrocytic AQP4-related autophagy via α2A-AR
    Juntao Weng, Yueyue Yang, Chenyu Li, Sandong Cao, Xiaoxia Xu, Gaolin Qiu, Dijia Wang, Xiaowen Zheng, Hu Liu, Zhilai Yang et al. · 2026 · Journal of Advanced Research
58. Repositioning Natural Products in Modern Drug Discovery: Technological Innovation, Systems Pharmacology, and Pathological Validation
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59. Studying Autophagy in Microglia: Overcoming the Obstacles
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60. Live and let die: analyzing ultrastructural features in cell death
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61. Development and evaluation of taxon-specific primers for the selected Caudovirales taxa
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62. Measurements of Cell Death Induced by Snake and Spider’s Venoms and Derived Toxins
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63. Accumulation of autophagosomes in aging human photoreceptor cell synapses
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64. Chapter Thirty‐Seven Monitoring Autophagy in Insect Eggs
    Ioannis P. Nezis, Issidora S. Papassideri · 2008 · Methods in enzymology on CD-ROM/Methods in enzymology
65. BVDV non-structural protein 4B promoted autophagy by regulating p62/LC3-II molecule
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66. Dehydration and self-cell cleaning by a single cell drives the formation of fruiting body of Lamproderma columbinum (Myxomycetes)
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67. Capillary Electrophoresis with Laser-Induced Fluorescent Detection of Immunolabeled Individual Autophagy Organelles Isolated from Liver Tissue
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68. Mevalonate Kinase Deficiency and Squalene Synthase Inhibitor (TAK-475): The Balance to Extinguish the Inflammation
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69. High resolution approaches for the identification of amyloid fragments in brain
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70. Role of acanthamoeba spp. in the environmental survival of listeria monocytogenes
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71. Mitochondrial Dysfunction and Protein Aggregation in the Cybrid Cell Model of Parkinson's Disease
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72. Neuroprotection for Photoreceptors
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73. KSHV vGPCR: A VIRAL ONCOPROTEIN THAT TRIGGERS AUTOPHAGY AND CELLULAR SENESCENCE
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74. Skeletal muscle atrophy: the role of miRNAs; Atrofia do músculo esquelético: a função dos miRNAs
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75. The Role of Nutritional Virulence in Francisella tularensis Pathogenesis
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76. Behaviour of endo-lysosomal and mitochondrial compartments in human NCL fibroblasts in vitro
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77. Measuring and modelling autophagic flux
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78. Prognostische Relevanz der Autophagie in histologischen Subtypen des papillären Nierenzellkarzinoms
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79. Ultrastructure of the Macroautophagy Pathway in Mammalian Cells
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80. Faculty Opinions recommendation of Virtual nanoscopy: generation of ultra-large high resolution electron microscopy maps.
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81. Faculty Opinions recommendation of Essential regulation of cell bioenergetics by constitutive InsP3 receptor Ca2+ transfer to mitochondria.
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82. Faculty Opinions recommendation of The ER-Mitochondria Tethering Complex VAPB-PTPIP51 Regulates Autophagy.
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83. Placental transcriptomic profiling in a mouse model of fetal growth restriction reveals disturbed inflammation and immunity regulation
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85. Assessment of Autophagy: Correlative and Super-Resolution Microscopy Techniques
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86. Autophagy in lipid metabolism
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87. Overexpression of NK4 suppresses hepatocellular carcinoma progression by inducing apoptosis and autophagy via MAPK pathway inhibition
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88. Étude de l'autophagie lors d'une co-infection par le virus de la rougeole et Salmonella typhimurium
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89. Mécanismes de pathogénie intracellulaire des Straphylococcus aureus hypervirulents au cours de l'infection osseuse
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90. Caractérisation de la voie de l’autophagie chez l’huître creuse Crassostrea gigas en réponse à une infection par le virus OsHV-1
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91. Détournement de la machinerie autophagique par le cytomégalovirus humain : conséquences sur sa multiplication
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92. Design and evaluation of therapeutic particles modulating autophagy
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93. Propagation et toxicité de la superoxide dismutase 1 dans la Sclérose Latérale Amyotrophique modélisée par des neurones moteurs dérivés de cellules souches pluripotentes induites
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95. The EMB/ATG7-mediated autophagic process regulates neurite outgrowth and promotes enteric neuronal development
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