The Ubi brothers reunited
Open accessAbstract
Atg12 and Atg8/LC3 are two ubiquitin-like proteins involved in autophagosome formation. They show several similar characteristics just like brothers evolved from the same ancestor, however, their functional relationship has been obscure. We recently reported that a super protein complex, the Atg16L complex, which consists of multiple Atg12-Atg5 conjugates and the associating protein Atg16L, has an E3-like role in the LC3 lipidation reaction 1. The activated intermediate, LC3-Atg3 (E2) is recruited to the site where the lipidation takes place by virtue of the Atg16L complex. Thus, these two closely resembling systems are connected also in terms of their functions. This finding will provide further important clues as to the origin of the autophagosome membrane, and how the process is regulated by starvation and PtdIns3P signals.Addendum to: Fujita N, Itoh T, Fukuda M, Noda T, Yoshimori T. The Atg16L complex specifies the site of LC3 lipidation for membrane biogenesis in autophagy. Mol Biol Cell 2008:10.1091/mbc.E07-12-257.
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
Prior to fusion of autophagosomes with lysosomes, LC3-II on the outer autophagosomal membrane is released by deconjugation of PE from LC3 by Atg4, while LC3-II associated with the inner membrane is retained and eventually degraded by acid hydrolases within the autophagolysosome.
“Prior to the fusion of autophagosomes with lysosomes, the LC3-II located on the outer autophagosomal membrane is released by deconjugation of PE from LC3 by the proteolytic activity of Atg4. By contrast, LC3-II associated with the inner membrane is retained, although eventually degraded by the acid hydrolases within the autophagolysosome [27].”
From LC3-Associated Phagocytosis (LAP): Connections with Host Autophagy (2012) · cites this paper as [27]
Split into 2 atoms — 0 confirmed, 1 partially supported, 0 disputed, 0 misattributed, 1 unverifiable. Expand the claim to see per-atom verdicts.
Experimental — accuracy not yet measured
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Cites
Still being checked.
Research works printed but not linked: 15
- Fujita N, Itoh T, Fukuda M, Noda T, Yoshimori T. The Atg16L complex specifies the site of LC3 lipidation for membrane biogenesis in autophagy. Mol Biol Cell 2008:10.1091/mbc. E07-12-257. · DOI
- Mizushima N, Noda T, Yoshimori T, Tanaka Y, Ishii T, George MD, Klionsky DJ, Ohsumi M, Ohsumi Y. A protein conjugation system essential for autophagy. Nature 1998; 395:395-8.
- Ichimura Y, Kirisako T, Takao T, Satomi Y, Shimonishi Y, Ishihara N, Mizushima N, Tanida I, Kominami E, Ohsumi M, Noda T, Ohsumi Y. A ubiquitin-like system mediates protein lipidation. Nature 2000; 408:488-92.
- Kabeya Y, Mizushima N, Ueno T, Yamamoto A, Kirisako T, Noda T, Kominami E, Ohsumi Y, Yoshimori T. LC3, a mammalian homologue of yeast Apg8p, is localized in autophagosome membranes after processing. EMBO J 2000; 19:5720-8.
- Kirisako T, Ichimura Y, Okada H, Kabeya Y, Mizushima N, Yoshimori T, Ohsumi M, Takao T, Noda T, Ohsumi Y. The reversible modification regulates the membrane-binding state of Apg8/Aut7 essential for autophagy and the cytoplasm to vacuole targeting pathway. J Cell Biol 2000; 151:263-76.
- Tsukada M, Ohsumi Y. Isolation and characterization of autophagy-defective mutants of Saccharomyces cerevisiae. FEBS Lett 1993; 333:169-74.
- Thumm M, Egner R, Koch B, Schlumpberger M, Straub M, Veenhuis M, Wolf DH. Isolation of autophagocytosis mutants of Saccharomyces cerevisiae. FEBS Lett 1994; 349:275-80.
- Harding TM, Morano KA, Scott SV, Klionsky DJ. Isolation and characterization of yeast mutants in the cytoplasm to vacuole protein targeting pathway. J Cell Biol 1995; 131:591-602.
- Suzuki NN, Yoshimoto K, Fujioka Y, Ohsumi Y, Inagaki F. The crystal structure of plant ATG12 and its biological implication in autophagy. Autophagy 2005; 1:119-26.
- Paz Y, Elazar Z, Fass D. Structure of GATE-16, membrane transport modulator and mam- malian ortholog of autophagocytosis factor Aut7p. J Biol Chem 2000; 275:25445-50.
- Suzuki K, Kirisako T, Kamada Y, Mizushima N, Noda T, Ohsumi Y. The pre-autophago- somal structure organized by concerted functions of APG genes is essential for autophago- some formation. EMBO J 2001; 20:5971-81.
- Mizushima N, Yamamoto A, Hatano M, Kobayashi Y, Kabeya Y, Suzuki K, Tokuhisa T, Ohsumi Y, Yoshimori T. Dissection of autophagosome formation using Apg5-deficient mouse embryonic stem cells. J Cell Biol 2001; 152:657-68.
- Mizushima N, Kuma A, Kobayashi Y, Yamamoto A, Matsubae M, Takao T, Natsume T, Ohsumi Y, Yoshimori T. Mouse Apg16L, a novel WD-repeat protein, targets to the autopha- gic isolation membrane with the Apg12-Apg5 conjugate. J Cell Sci 2003; 116:1679-88.
- Hanada T, Ohsumi Y. Structure-function relationship of Atg12, a ubiquitin-like modifier essential for autophagy. Autophagy 2005; 1:110-8.
- Hanada T, Noda NN, Satomi Y, Ichimura Y, Fujioka Y, Takao T, Inagaki F, Ohsumi Y. The Atg12-Atg5 conjugate has a novel E3-like activity for protein lipidation in autophagy. J Biol Chem 2007; 282:37298-302.
Cited by
Sorted by citations
Autophagosome formation—The role of ULK1 and Beclin1–PI3KC3 complexes in setting the stage
Wirth, M., Joachim, J., & Tooze, S. A. (2013) · Seminars in Cancer Biology · doi:10.1016/j.semcancer.2013.05.007 · Cited by 277 · see citing works
LC3-Associated Phagocytosis (LAP): Connections with Host Autophagy
Lai, S.-C., & Devenish, R. J. (2012) · Cells · doi:10.3390/cells1030396 · Cited by 116 · see citing works
“By contrast, LC3-II associated with the inner membrane is retained, although eventually degraded by the acid hydrolases within the autophagolysosome [27].”
BackgroundInsights into noncanonical E1 enzyme activation from the structure of autophagic E1 Atg7 with Atg8
Hong, S., Kim, B.-W., Lee, K.-E., Kim, S. W., Jeon, H., Kim, J., & Song, H. K. (2011) · Nature Structural & Molecular Biology · doi:10.1038/nsmb.2165 · Cited by 100 · see citing works
When autophagy meets viruses: a double-edged sword with functions in defense and offense
Kim, H. J., Lee, S., & Jung, J. U. (2010) · Seminars in Immunopathology · doi:10.1007/s00281-010-0226-8 · Cited by 90 · see citing works
Dengue virus infection induces autophagy: an in vivo study
Lee, Y., Hu, H.-Y., Kuo, S.-H., Lei, H.-Y., Lin, Y.-S., Yeh, T., Liu, C., & Liu, H. (2013) · Journal of Biomedical Science · doi:10.1186/1423-0127-20-65 · Cited by 72 · see citing works
Emerging roles for the ubiquitin-proteasome system and autophagy in pancreatic β-cells
Hartley, T., Brumell, J. H., & Volchuk, A. (2008) · American Journal of Physiology-Endocrinology and Metabolism · doi:10.1152/ajpendo.90538.2008 · Cited by 53 · see citing works
Chan, S. N., & Tang, B. L. (2013) · Molecular Membrane Biology · doi:10.3109/09687688.2013.850178 · Cited by 43 · see citing works
Structure and potential function of γ‐aminobutyrate type A receptor‐associated protein
Mohrlüder, J., Schwarten, M., & Willbold, D. (2009) · FEBS Journal · doi:10.1111/j.1742-4658.2009.07207.x · Cited by 41 · see citing works
Role of autophagy in the maintenance and function of cancer stem cells
Vitale, I., Manic, G., Dandrea, V., & Maria, R. D. (2015) · The International Journal of Developmental Biology · doi:10.1387/ijdb.150082iv · Cited by 39 · see citing works
Trafficking and signaling in mammalian autophagy
Tooze, S. A., Jefferies, H. B. J., Kalie, E., Longatti, A., McAlpine, F. E., McKnight, N. C., Orsi, A., Polson, H. E. J., Razi, M., Robinson, D. J., et al. (2010) · IUBMB Life · doi:10.1002/iub.334 · Cited by 37 · see citing works
How autophagy can restore proteostasis defects in multiple diseases?
Joshi, V., Upadhyay, A., Prajapati, V. K., & Mishra, A. (2020) · Medicinal Research Reviews · doi:10.1002/med.21662 · Cited by 38 · see citing works
UNC51‐like kinase 1, autophagic regulator and cancer therapeutic target
Chen, Y., He, J., Tian, M., Zhang, S. ‐., Guo, M., Kasimu, R., Wang, J. ‐., & Ouyang, L. (2014) · Cell Proliferation · doi:10.1111/cpr.12145 · Cited by 34 · see citing works
Structure of the autophagic E2 enzyme Atg10
Hong, S., Kim, B.-W., Kim, J., & Song, H. K. (2012) · Acta Crystallographica Section D Biological Crystallography · doi:10.1107/s0907444912034166 · Cited by 30 · see citing works
The role of membrane proteins in mammalian autophagy.
Tooze, S. (2010) · Seminars in Cell and Developmental Biology · doi:10.1016/j.semcdb.2010.03.007 · Cited by 25 · see citing works
Autophagy induction reduces telomerase activity in HeLa cells
Taji, F., Kouchesfahani, H. M., Sheikholeslami, F., Romani, B., Baesi, K., Vahabpour, R., Edalati, M., Teimoori‐Toolabi, L., Jazaeri, E. O., & Abdoli, A. (2016) · Mechanisms of Ageing and Development · doi:10.1016/j.mad.2016.12.011 · Cited by 24 · see citing works
Three-Axis Model for Atg Recruitment in Autophagy againstSalmonella
Noda, T., Kageyama, S., Fujita, N., & Yoshimori, T. (2012) · International Journal of Cell Biology · doi:10.1155/2012/389562 · Cited by 15 · see citing works
Self-citationAutophagy in response to environmental stresses: New monitoring perspectives
Tang, B. L. (2015) · Ecological Indicators · doi:10.1016/j.ecolind.2015.07.022 · Cited by 13 · see citing works
Chowdhury, I. J. K., Siregar, T. A. P., Haque, M. F., & Ponpuak, M. (2025) · Critical Reviews in Microbiology · doi:10.1080/1040841x.2025.2562930 · Cited by 3 · see citing works
Autophagy and LC3-associated phagocytosis: similarities and differences
Рафисович, И. Б., Skibo, Y. V., & Abramova, Z. I. (2023) · Medical Immunology (Russia) · doi:10.15789/10.15789/1563-0625-aal-2569 · Cited by 2 · see citing works
Rafiyan, M., Mahmoudhashemi, S. F., Tootoonchi, E., Mousavi, M., Shafiei, A., Rezaei, N., Morshedi, M., Morshedi, M. M., Ferns, G. A., Jamaati, H., et al. (2025) · Advances in experimental medicine and biology · doi:10.1007/5584_2025_880 · Cited by 1 · see citing works
RetractedUematsu, S., & Akira, S. (2009) · Bioscience and Microflora · doi:10.12938/bifidus.28.69 · Cited by 1 · see citing works
Necrobiology of Liver Cancer: Autophagy and Cellular Senescence
Zimmermann, A. (2016) · Springer eBooks · doi:10.1007/978-3-319-26587-2_179-1
Necrobiology of Liver Cancer: Autophagy and Cellular Senescence
Zimmermann, A. (2016) · Springer eBooks · doi:10.1007/978-3-319-26956-6_179
- Authors
- Noda, T., Fujita, N., & Yoshimori, T.
- Affiliations
- Research Institute for Microbial Diseases, The University of Osaka (JP)
- Venue
- Autophagy
- Publisher
- Informa UK Limited
- Published
- 2008-05-16
- Volume
- 4
- Issue
- 4
- Pages
- 540-541
- ISSN
- 1554-8627 (ISSN-L)
- 1554-8635
- OpenAlex
- W2334805732
- Cited by
- 23
- References
- 0
- Citations by year
- 2025: 2 · 2023: 1 · 2020: 1 · 2016: 3 · 2015: 2 · 2014: 1 · 2013: 3 · 2012: 3
- FWCI
- 1.72
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Locations
- Autophagy (publishedVersion)
- PubMed (publishedVersion)
- Topics
- Health Sciences › Medicine › Epidemiology › Autophagy in Disease and Therapy
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Ubiquitin and proteasome pathways
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Cell Biology › Cellular transport and secretion
- Keywords
- ATG12, ubiquitin-like proteins, autophagosome formation, LC3 lipidation, ATG12-ATG5 conjugate
- MeSH terms
- Autophagy-Related Proteins, Autophagy-Related Protein 12, Animals, Autophagy, Carrier Proteins, Humans, Microtubule-Associated Proteins, Phagosomes, Signal Transduction, Ubiquitin, Small Ubiquitin-Related Modifier Proteins, Multiprotein Complexes
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review