Cited by 23Autophagy in Disease and TherapyUbiquitin and proteasome pathwaysCellular transport and secretion

The Ubi brothers reunited

Open access
Noda, Takeshi, Fujita, Naonobu, Yoshimori, Tamotsu·2008·Autophagy

Abstract

Atg12 and Atg8/LC3 are two ubiquitin-like proteins involved in autophagosome formation. They show several similar characteristics just like brothers evolved from the same ancestor, however, their functional relationship has been obscure. We recently reported that a super protein complex, the Atg16L complex, which consists of multiple Atg12-Atg5 conjugates and the associating protein Atg16L, has an E3-like role in the LC3 lipidation reaction 1. The activated intermediate, LC3-Atg3 (E2) is recruited to the site where the lipidation takes place by virtue of the Atg16L complex. Thus, these two closely resembling systems are connected also in terms of their functions. This finding will provide further important clues as to the origin of the autophagosome membrane, and how the process is regulated by starvation and PtdIns3P signals.Addendum to: Fujita N, Itoh T, Fukuda M, Noda T, Yoshimori T. The Atg16L complex specifies the site of LC3 lipidation for membrane biogenesis in autophagy. Mol Biol Cell 2008:10.1091/mbc.E07-12-257.

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Integrity signals

Registry

Crossref · 10.4161/auto.5973

Cites

Statistics

Claims the paper makes

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

  • Prior to fusion of autophagosomes with lysosomes, LC3-II on the outer autophagosomal membrane is released by deconjugation of PE from LC3 by Atg4, while LC3-II associated with the inner membrane is retained and eventually degraded by acid hydrolases within the autophagolysosome.

    “Prior to the fusion of autophagosomes with lysosomes, the LC3-II located on the outer autophagosomal membrane is released by deconjugation of PE from LC3 by the proteolytic activity of Atg4. By contrast, LC3-II associated with the inner membrane is retained, although eventually degraded by the acid hydrolases within the autophagolysosome [27].”

    From LC3-Associated Phagocytosis (LAP): Connections with Host Autophagy (2012) · cites this paper as [27]

    Split into 2 atoms — 0 confirmed, 1 partially supported, 0 disputed, 0 misattributed, 1 unverifiable. Expand the claim to see per-atom verdicts.

    Experimental — accuracy not yet measured

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

The self-check needs the paper’s full text.

Cites

Still being checked.

Research works printed but not linked: 15

  1. Fujita N, Itoh T, Fukuda M, Noda T, Yoshimori T. The Atg16L complex specifies the site of LC3 lipidation for membrane biogenesis in autophagy. Mol Biol Cell 2008:10.1091/mbc. E07-12-257. · DOI
  2. Mizushima N, Noda T, Yoshimori T, Tanaka Y, Ishii T, George MD, Klionsky DJ, Ohsumi M, Ohsumi Y. A protein conjugation system essential for autophagy. Nature 1998; 395:395-8.
  3. Ichimura Y, Kirisako T, Takao T, Satomi Y, Shimonishi Y, Ishihara N, Mizushima N, Tanida I, Kominami E, Ohsumi M, Noda T, Ohsumi Y. A ubiquitin-like system mediates protein lipidation. Nature 2000; 408:488-92.
  4. Kabeya Y, Mizushima N, Ueno T, Yamamoto A, Kirisako T, Noda T, Kominami E, Ohsumi Y, Yoshimori T. LC3, a mammalian homologue of yeast Apg8p, is localized in autophagosome membranes after processing. EMBO J 2000; 19:5720-8.
  5. Kirisako T, Ichimura Y, Okada H, Kabeya Y, Mizushima N, Yoshimori T, Ohsumi M, Takao T, Noda T, Ohsumi Y. The reversible modification regulates the membrane-binding state of Apg8/Aut7 essential for autophagy and the cytoplasm to vacuole targeting pathway. J Cell Biol 2000; 151:263-76.
  6. Tsukada M, Ohsumi Y. Isolation and characterization of autophagy-defective mutants of Saccharomyces cerevisiae. FEBS Lett 1993; 333:169-74.
  7. Thumm M, Egner R, Koch B, Schlumpberger M, Straub M, Veenhuis M, Wolf DH. Isolation of autophagocytosis mutants of Saccharomyces cerevisiae. FEBS Lett 1994; 349:275-80.
  8. Harding TM, Morano KA, Scott SV, Klionsky DJ. Isolation and characterization of yeast mutants in the cytoplasm to vacuole protein targeting pathway. J Cell Biol 1995; 131:591-602.
  9. Suzuki NN, Yoshimoto K, Fujioka Y, Ohsumi Y, Inagaki F. The crystal structure of plant ATG12 and its biological implication in autophagy. Autophagy 2005; 1:119-26.
  10. Paz Y, Elazar Z, Fass D. Structure of GATE-16, membrane transport modulator and mam- malian ortholog of autophagocytosis factor Aut7p. J Biol Chem 2000; 275:25445-50.
  11. Suzuki K, Kirisako T, Kamada Y, Mizushima N, Noda T, Ohsumi Y. The pre-autophago- somal structure organized by concerted functions of APG genes is essential for autophago- some formation. EMBO J 2001; 20:5971-81.
  12. Mizushima N, Yamamoto A, Hatano M, Kobayashi Y, Kabeya Y, Suzuki K, Tokuhisa T, Ohsumi Y, Yoshimori T. Dissection of autophagosome formation using Apg5-deficient mouse embryonic stem cells. J Cell Biol 2001; 152:657-68.
  13. Mizushima N, Kuma A, Kobayashi Y, Yamamoto A, Matsubae M, Takao T, Natsume T, Ohsumi Y, Yoshimori T. Mouse Apg16L, a novel WD-repeat protein, targets to the autopha- gic isolation membrane with the Apg12-Apg5 conjugate. J Cell Sci 2003; 116:1679-88.
  14. Hanada T, Ohsumi Y. Structure-function relationship of Atg12, a ubiquitin-like modifier essential for autophagy. Autophagy 2005; 1:110-8.
  15. Hanada T, Noda NN, Satomi Y, Ichimura Y, Fujioka Y, Takao T, Inagaki F, Ohsumi Y. The Atg12-Atg5 conjugate has a novel E3-like activity for protein lipidation in autophagy. J Biol Chem 2007; 282:37298-302.

Cited by

Sorted by citations

Authors
Noda, T., Fujita, N., & Yoshimori, T.
Affiliations
Research Institute for Microbial Diseases, The University of Osaka (JP)
Venue
Autophagy
Published
2008-05-16
Volume
4
Issue
4
Pages
540-541
ISSN
  • 1554-8627 (ISSN-L)
  • 1554-8635
OpenAlex
W2334805732
Cited by
23
References
0
Citations by year
2025: 2 · 2023: 1 · 2020: 1 · 2016: 3 · 2015: 2 · 2014: 1 · 2013: 3 · 2012: 3
FWCI
1.72
Type
journal article
Language
en
Open access
Locations
  • Autophagy (publishedVersion)
  • PubMed (publishedVersion)
Topics
  • Health Sciences › Medicine › Epidemiology › Autophagy in Disease and Therapy
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Ubiquitin and proteasome pathways
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Cell Biology › Cellular transport and secretion
Keywords
ATG12, ubiquitin-like proteins, autophagosome formation, LC3 lipidation, ATG12-ATG5 conjugate
MeSH terms
Autophagy-Related Proteins, Autophagy-Related Protein 12, Animals, Autophagy, Carrier Proteins, Humans, Microtubule-Associated Proteins, Phagosomes, Signal Transduction, Ubiquitin, Small Ubiquitin-Related Modifier Proteins, Multiprotein Complexes

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review